Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS29510 and ABIE40_RS29515 are separated by 12 nucleotides ABIE40_RS29515 and ABIE40_RS29520 are separated by 290 nucleotides ABIE40_RS29520 and ABIE40_RS29525 are separated by 342 nucleotides
ABIE40_RS29510: ABIE40_RS29510 - sulfite exporter TauE/SafE family protein, at 594,407 to 595,162
_RS29510
ABIE40_RS29515: ABIE40_RS29515 - hypothetical protein, at 595,175 to 595,798
_RS29515
ABIE40_RS29520: ABIE40_RS29520 - hypothetical protein, at 596,089 to 596,334
_RS29520
ABIE40_RS29525: ABIE40_RS29525 - DNA ligase D, at 596,677 to 599,340
_RS29525
Position (kb) 596
597 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 595.107 kb on + strand at 595.107 kb on + strand at 595.108 kb on - strand at 595.148 kb on + strand at 595.160 kb on + strand at 595.264 kb on + strand, within ABIE40_RS29515 at 595.297 kb on + strand, within ABIE40_RS29515 at 595.299 kb on + strand, within ABIE40_RS29515 at 595.300 kb on - strand, within ABIE40_RS29515 at 595.706 kb on - strand, within ABIE40_RS29515 at 595.817 kb on + strand at 595.818 kb on - strand at 595.851 kb on - strand at 595.851 kb on - strand at 595.873 kb on + strand at 595.874 kb on - strand at 595.876 kb on + strand at 595.877 kb on - strand at 595.877 kb on - strand at 595.877 kb on - strand at 595.895 kb on + strand at 595.903 kb on + strand at 595.903 kb on + strand at 595.904 kb on - strand at 595.933 kb on + strand at 596.027 kb on + strand at 596.090 kb on + strand at 596.090 kb on + strand at 596.090 kb on + strand at 596.091 kb on - strand at 596.091 kb on - strand at 596.091 kb on - strand at 596.091 kb on - strand at 596.091 kb on - strand at 596.123 kb on + strand, within ABIE40_RS29520 at 596.123 kb on + strand, within ABIE40_RS29520 at 596.123 kb on + strand, within ABIE40_RS29520 at 596.124 kb on - strand, within ABIE40_RS29520 at 596.124 kb on - strand, within ABIE40_RS29520 at 596.134 kb on + strand, within ABIE40_RS29520 at 596.134 kb on + strand, within ABIE40_RS29520 at 596.135 kb on - strand, within ABIE40_RS29520 at 596.135 kb on - strand, within ABIE40_RS29520 at 596.185 kb on + strand, within ABIE40_RS29520 at 596.186 kb on - strand, within ABIE40_RS29520 at 596.215 kb on - strand, within ABIE40_RS29520 at 596.380 kb on + strand at 596.400 kb on - strand at 596.465 kb on - strand at 596.465 kb on - strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.659 kb on + strand at 596.660 kb on - strand at 596.660 kb on - strand at 596.660 kb on - strand at 596.660 kb on - strand at 596.660 kb on - strand at 596.660 kb on - strand at 596.673 kb on + strand at 596.673 kb on + strand at 596.673 kb on + strand at 596.674 kb on - strand at 596.674 kb on - strand at 596.747 kb on + strand at 596.748 kb on - strand at 596.748 kb on - strand at 596.748 kb on - strand at 596.748 kb on - strand at 596.925 kb on - strand at 596.975 kb on + strand, within ABIE40_RS29525 at 596.975 kb on + strand, within ABIE40_RS29525 at 596.975 kb on + strand, within ABIE40_RS29525 at 596.976 kb on - strand, within ABIE40_RS29525 at 597.188 kb on - strand, within ABIE40_RS29525 at 597.188 kb on - strand, within ABIE40_RS29525 at 597.188 kb on - strand, within ABIE40_RS29525 at 597.188 kb on - strand, within ABIE40_RS29525 at 597.188 kb on - strand, within ABIE40_RS29525 at 597.326 kb on + strand, within ABIE40_RS29525 at 597.327 kb on - strand, within ABIE40_RS29525
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 595,107 + -0.7 595,107 + +0.1 595,108 - -1.2 595,148 + -2.0 595,160 + +0.8 595,264 + ABIE40_RS29515 0.14 +1.2 595,297 + ABIE40_RS29515 0.20 -1.8 595,299 + ABIE40_RS29515 0.20 -1.5 595,300 - ABIE40_RS29515 0.20 -1.0 595,706 - ABIE40_RS29515 0.85 +0.4 595,817 + -1.0 595,818 - -1.2 595,851 - -0.2 595,851 - -0.3 595,873 + +0.4 595,874 - -0.7 595,876 + +0.2 595,877 - +2.7 595,877 - -1.3 595,877 - +2.3 595,895 + -0.3 595,903 + -1.2 595,903 + -3.0 595,904 - +0.8 595,933 + -0.7 596,027 + -0.3 596,090 + -0.5 596,090 + -0.2 596,090 + -0.2 596,091 - +0.1 596,091 - +0.2 596,091 - +0.9 596,091 - +0.6 596,091 - +0.3 596,123 + ABIE40_RS29520 0.14 -1.6 596,123 + ABIE40_RS29520 0.14 +0.3 596,123 + ABIE40_RS29520 0.14 -0.7 596,124 - ABIE40_RS29520 0.14 -2.0 596,124 - ABIE40_RS29520 0.14 -0.6 596,134 + ABIE40_RS29520 0.18 -1.1 596,134 + ABIE40_RS29520 0.18 -0.9 596,135 - ABIE40_RS29520 0.19 -0.1 596,135 - ABIE40_RS29520 0.19 -0.5 596,185 + ABIE40_RS29520 0.39 -1.0 596,186 - ABIE40_RS29520 0.39 -0.4 596,215 - ABIE40_RS29520 0.51 -0.1 596,380 + +0.2 596,400 - -0.8 596,465 - -0.5 596,465 - -0.3 596,659 + +0.8 596,659 + -0.7 596,659 + -0.7 596,659 + +0.7 596,659 + -2.7 596,659 + +1.0 596,659 + +0.5 596,659 + -0.5 596,659 + -0.4 596,660 - +1.1 596,660 - -0.7 596,660 - +1.5 596,660 - -0.2 596,660 - -0.2 596,660 - -1.0 596,673 + -0.7 596,673 + +0.6 596,673 + +0.0 596,674 - -0.6 596,674 - -0.6 596,747 + +0.9 596,748 - -0.4 596,748 - -0.3 596,748 - -0.4 596,748 - +0.1 596,925 - +1.5 596,975 + ABIE40_RS29525 0.11 -0.2 596,975 + ABIE40_RS29525 0.11 -2.2 596,975 + ABIE40_RS29525 0.11 -2.3 596,976 - ABIE40_RS29525 0.11 -0.9 597,188 - ABIE40_RS29525 0.19 +0.3 597,188 - ABIE40_RS29525 0.19 -0.3 597,188 - ABIE40_RS29525 0.19 +0.3 597,188 - ABIE40_RS29525 0.19 -1.8 597,188 - ABIE40_RS29525 0.19 -0.3 597,326 + ABIE40_RS29525 0.24 +0.0 597,327 - ABIE40_RS29525 0.24 -1.5
Or see this region's nucleotide sequence