Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28040 and ABIE40_RS28045 are separated by 20 nucleotides ABIE40_RS28045 and ABIE40_RS28050 are separated by 11 nucleotides ABIE40_RS28050 and ABIE40_RS28055 overlap by 29 nucleotides ABIE40_RS28055 and ABIE40_RS28060 are separated by 134 nucleotides
ABIE40_RS28040: ABIE40_RS28040 - Crp/Fnr family transcriptional regulator, at 318,761 to 319,504
_RS28040
ABIE40_RS28045: ABIE40_RS28045 - hypothetical protein, at 319,525 to 319,890
_RS28045
ABIE40_RS28050: ABIE40_RS28050 - helicase-related protein, at 319,902 to 320,546
_RS28050
ABIE40_RS28055: ABIE40_RS28055 - hypothetical protein, at 320,518 to 320,733
_RS28055
ABIE40_RS28060: ABIE40_RS28060 - damage-inducible mutagenesis protein, at 320,868 to 321,610
_RS28060
Position (kb) 319
320 Strain fitness (log2 ratio) -2
-1
0
1
2 at 318.677 kb on + strand at 319.042 kb on - strand, within ABIE40_RS28040 at 319.042 kb on - strand, within ABIE40_RS28040 at 319.047 kb on + strand, within ABIE40_RS28040 at 319.048 kb on - strand, within ABIE40_RS28040 at 319.048 kb on - strand, within ABIE40_RS28040 at 319.159 kb on - strand, within ABIE40_RS28040 at 319.421 kb on + strand, within ABIE40_RS28040 at 319.421 kb on + strand, within ABIE40_RS28040 at 319.421 kb on + strand, within ABIE40_RS28040 at 319.561 kb on + strand at 319.561 kb on + strand at 319.561 kb on + strand at 319.561 kb on + strand at 319.651 kb on + strand, within ABIE40_RS28045 at 319.758 kb on - strand, within ABIE40_RS28045 at 319.879 kb on - strand at 319.885 kb on + strand at 319.885 kb on + strand at 319.885 kb on + strand at 319.886 kb on - strand at 319.886 kb on - strand at 319.889 kb on - strand at 319.944 kb on + strand at 319.945 kb on - strand at 319.945 kb on - strand at 320.118 kb on + strand, within ABIE40_RS28050 at 320.118 kb on + strand, within ABIE40_RS28050 at 320.118 kb on + strand, within ABIE40_RS28050 at 320.118 kb on + strand, within ABIE40_RS28050 at 320.118 kb on + strand, within ABIE40_RS28050 at 320.119 kb on - strand, within ABIE40_RS28050 at 320.119 kb on - strand, within ABIE40_RS28050 at 320.119 kb on - strand, within ABIE40_RS28050 at 320.223 kb on + strand, within ABIE40_RS28050 at 320.223 kb on + strand, within ABIE40_RS28050 at 320.224 kb on - strand, within ABIE40_RS28050 at 320.356 kb on + strand, within ABIE40_RS28050 at 320.357 kb on - strand, within ABIE40_RS28050 at 320.364 kb on + strand, within ABIE40_RS28050 at 320.365 kb on - strand, within ABIE40_RS28050 at 320.365 kb on - strand, within ABIE40_RS28050 at 320.401 kb on + strand, within ABIE40_RS28050 at 320.402 kb on - strand, within ABIE40_RS28050 at 320.402 kb on - strand, within ABIE40_RS28050 at 320.574 kb on - strand, within ABIE40_RS28055 at 320.687 kb on - strand, within ABIE40_RS28055 at 320.758 kb on + strand at 320.759 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 318,677 + -2.1 319,042 - ABIE40_RS28040 0.38 -0.3 319,042 - ABIE40_RS28040 0.38 +0.5 319,047 + ABIE40_RS28040 0.38 -1.4 319,048 - ABIE40_RS28040 0.39 -0.9 319,048 - ABIE40_RS28040 0.39 -0.9 319,159 - ABIE40_RS28040 0.53 +0.1 319,421 + ABIE40_RS28040 0.89 -1.6 319,421 + ABIE40_RS28040 0.89 +0.7 319,421 + ABIE40_RS28040 0.89 -0.5 319,561 + +1.5 319,561 + +0.1 319,561 + -0.6 319,561 + +0.5 319,651 + ABIE40_RS28045 0.34 -2.5 319,758 - ABIE40_RS28045 0.64 -1.4 319,879 - -0.4 319,885 + -1.4 319,885 + +0.3 319,885 + -0.6 319,886 - -1.0 319,886 - -0.2 319,889 - +0.2 319,944 + -0.6 319,945 - -0.1 319,945 - +2.7 320,118 + ABIE40_RS28050 0.33 -0.5 320,118 + ABIE40_RS28050 0.33 +0.2 320,118 + ABIE40_RS28050 0.33 -0.9 320,118 + ABIE40_RS28050 0.33 +0.8 320,118 + ABIE40_RS28050 0.33 +2.1 320,119 - ABIE40_RS28050 0.34 +0.3 320,119 - ABIE40_RS28050 0.34 -0.1 320,119 - ABIE40_RS28050 0.34 -2.7 320,223 + ABIE40_RS28050 0.50 -0.4 320,223 + ABIE40_RS28050 0.50 -1.9 320,224 - ABIE40_RS28050 0.50 -0.9 320,356 + ABIE40_RS28050 0.70 -0.3 320,357 - ABIE40_RS28050 0.71 -0.2 320,364 + ABIE40_RS28050 0.72 +0.1 320,365 - ABIE40_RS28050 0.72 -2.0 320,365 - ABIE40_RS28050 0.72 +0.5 320,401 + ABIE40_RS28050 0.77 +0.8 320,402 - ABIE40_RS28050 0.78 -1.3 320,402 - ABIE40_RS28050 0.78 -1.2 320,574 - ABIE40_RS28055 0.26 +1.6 320,687 - ABIE40_RS28055 0.78 +0.8 320,758 + -0.5 320,759 - +0.3
Or see this region's nucleotide sequence