Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS26150

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS26145 and ABIE40_RS26150 are separated by 183 nucleotidesABIE40_RS26150 and ABIE40_RS26155 are separated by 9 nucleotidesABIE40_RS26155 and ABIE40_RS26160 are separated by 1 nucleotides ABIE40_RS26145: ABIE40_RS26145 - cytochrome c oxidase accessory protein CcoG, at 1,411,541 to 1,413,109 _RS26145 ABIE40_RS26150: ABIE40_RS26150 - hypothetical protein, at 1,413,293 to 1,413,478 _RS26150 ABIE40_RS26155: ABIE40_RS26155 - cytochrome-c oxidase, cbb3-type subunit III, at 1,413,488 to 1,414,351 _RS26155 ABIE40_RS26160: ABIE40_RS26160 - cbb3-type cytochrome c oxidase subunit 3, at 1,414,353 to 1,414,505 _RS26160 Position (kb) 1413 1414Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1412.343 kb on + strand, within ABIE40_RS26145at 1412.343 kb on + strand, within ABIE40_RS26145at 1412.343 kb on + strand, within ABIE40_RS26145at 1412.344 kb on - strand, within ABIE40_RS26145at 1412.344 kb on - strand, within ABIE40_RS26145at 1412.406 kb on + strand, within ABIE40_RS26145at 1412.406 kb on + strand, within ABIE40_RS26145at 1412.406 kb on + strand, within ABIE40_RS26145at 1412.406 kb on + strand, within ABIE40_RS26145at 1412.406 kb on + strand, within ABIE40_RS26145at 1412.406 kb on + strand, within ABIE40_RS26145at 1412.406 kb on + strand, within ABIE40_RS26145at 1412.406 kb on + strand, within ABIE40_RS26145at 1412.406 kb on + strand, within ABIE40_RS26145at 1412.406 kb on + strand, within ABIE40_RS26145at 1412.406 kb on + strand, within ABIE40_RS26145at 1412.407 kb on - strand, within ABIE40_RS26145at 1412.407 kb on - strand, within ABIE40_RS26145at 1412.407 kb on - strand, within ABIE40_RS26145at 1412.407 kb on - strand, within ABIE40_RS26145at 1412.407 kb on - strand, within ABIE40_RS26145at 1412.445 kb on + strand, within ABIE40_RS26145at 1412.445 kb on + strand, within ABIE40_RS26145at 1412.445 kb on + strand, within ABIE40_RS26145at 1412.445 kb on + strand, within ABIE40_RS26145at 1412.445 kb on + strand, within ABIE40_RS26145at 1412.445 kb on + strand, within ABIE40_RS26145at 1412.445 kb on + strand, within ABIE40_RS26145at 1412.445 kb on + strand, within ABIE40_RS26145at 1412.446 kb on - strand, within ABIE40_RS26145at 1412.446 kb on - strand, within ABIE40_RS26145at 1412.446 kb on - strand, within ABIE40_RS26145at 1412.446 kb on - strand, within ABIE40_RS26145at 1412.541 kb on + strand, within ABIE40_RS26145at 1412.541 kb on + strand, within ABIE40_RS26145at 1412.542 kb on - strand, within ABIE40_RS26145at 1412.542 kb on - strand, within ABIE40_RS26145at 1412.805 kb on + strand, within ABIE40_RS26145at 1412.806 kb on - strand, within ABIE40_RS26145at 1412.806 kb on - strand, within ABIE40_RS26145at 1412.808 kb on + strand, within ABIE40_RS26145at 1412.809 kb on - strand, within ABIE40_RS26145at 1412.844 kb on + strand, within ABIE40_RS26145at 1412.845 kb on - strand, within ABIE40_RS26145at 1412.845 kb on - strand, within ABIE40_RS26145at 1412.892 kb on + strand, within ABIE40_RS26145at 1412.892 kb on + strand, within ABIE40_RS26145at 1412.892 kb on + strand, within ABIE40_RS26145at 1412.928 kb on + strand, within ABIE40_RS26145at 1412.929 kb on - strand, within ABIE40_RS26145at 1412.931 kb on + strand, within ABIE40_RS26145at 1412.931 kb on + strand, within ABIE40_RS26145at 1412.931 kb on + strand, within ABIE40_RS26145at 1412.931 kb on + strand, within ABIE40_RS26145at 1412.931 kb on + strand, within ABIE40_RS26145at 1412.931 kb on + strand, within ABIE40_RS26145at 1412.931 kb on + strand, within ABIE40_RS26145at 1412.932 kb on - strand, within ABIE40_RS26145at 1412.932 kb on - strand, within ABIE40_RS26145at 1412.932 kb on - strand, within ABIE40_RS26145at 1412.932 kb on - strand, within ABIE40_RS26145at 1412.932 kb on - strand, within ABIE40_RS26145at 1412.932 kb on - strand, within ABIE40_RS26145at 1412.932 kb on - strand, within ABIE40_RS26145at 1412.932 kb on - strand, within ABIE40_RS26145at 1413.021 kb on + strandat 1413.021 kb on + strandat 1413.021 kb on + strandat 1413.022 kb on - strandat 1413.022 kb on - strandat 1413.109 kb on + strandat 1413.109 kb on + strandat 1413.109 kb on + strandat 1413.110 kb on - strandat 1413.110 kb on - strandat 1413.110 kb on - strandat 1413.113 kb on + strandat 1413.113 kb on + strandat 1413.113 kb on + strandat 1413.114 kb on - strandat 1413.132 kb on + strandat 1413.132 kb on + strandat 1413.133 kb on - strandat 1413.171 kb on + strandat 1413.171 kb on + strandat 1413.441 kb on + strand, within ABIE40_RS26150at 1413.442 kb on - strand, within ABIE40_RS26150at 1413.478 kb on + strandat 1413.479 kb on - strandat 1413.479 kb on - strandat 1413.760 kb on + strand, within ABIE40_RS26155at 1413.760 kb on + strand, within ABIE40_RS26155at 1413.761 kb on - strand, within ABIE40_RS26155at 1413.780 kb on + strand, within ABIE40_RS26155at 1413.780 kb on + strand, within ABIE40_RS26155at 1413.781 kb on - strand, within ABIE40_RS26155at 1414.153 kb on - strand, within ABIE40_RS26155at 1414.162 kb on - strand, within ABIE40_RS26155at 1414.212 kb on + strand, within ABIE40_RS26155at 1414.239 kb on + strand, within ABIE40_RS26155at 1414.239 kb on + strand, within ABIE40_RS26155at 1414.240 kb on - strand, within ABIE40_RS26155at 1414.240 kb on - strand, within ABIE40_RS26155at 1414.240 kb on - strand, within ABIE40_RS26155at 1414.240 kb on - strand, within ABIE40_RS26155at 1414.337 kb on - strandat 1414.420 kb on + strand, within ABIE40_RS26160at 1414.420 kb on + strand, within ABIE40_RS26160at 1414.420 kb on + strand, within ABIE40_RS26160at 1414.421 kb on - strand, within ABIE40_RS26160at 1414.421 kb on - strand, within ABIE40_RS26160

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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1,412,343 + ABIE40_RS26145 0.51 -0.6
1,412,343 + ABIE40_RS26145 0.51 -0.1
1,412,343 + ABIE40_RS26145 0.51 -0.4
1,412,344 - ABIE40_RS26145 0.51 -0.8
1,412,344 - ABIE40_RS26145 0.51 +1.1
1,412,406 + ABIE40_RS26145 0.55 -0.3
1,412,406 + ABIE40_RS26145 0.55 +2.8
1,412,406 + ABIE40_RS26145 0.55 -0.5
1,412,406 + ABIE40_RS26145 0.55 +2.3
1,412,406 + ABIE40_RS26145 0.55 +2.0
1,412,406 + ABIE40_RS26145 0.55 -0.4
1,412,406 + ABIE40_RS26145 0.55 +0.0
1,412,406 + ABIE40_RS26145 0.55 +0.3
1,412,406 + ABIE40_RS26145 0.55 -1.0
1,412,406 + ABIE40_RS26145 0.55 -0.7
1,412,406 + ABIE40_RS26145 0.55 -2.1
1,412,407 - ABIE40_RS26145 0.55 -0.9
1,412,407 - ABIE40_RS26145 0.55 +0.2
1,412,407 - ABIE40_RS26145 0.55 -0.1
1,412,407 - ABIE40_RS26145 0.55 +0.9
1,412,407 - ABIE40_RS26145 0.55 -2.1
1,412,445 + ABIE40_RS26145 0.58 -0.1
1,412,445 + ABIE40_RS26145 0.58 +0.3
1,412,445 + ABIE40_RS26145 0.58 +1.7
1,412,445 + ABIE40_RS26145 0.58 +0.9
1,412,445 + ABIE40_RS26145 0.58 -0.3
1,412,445 + ABIE40_RS26145 0.58 -2.2
1,412,445 + ABIE40_RS26145 0.58 -1.0
1,412,445 + ABIE40_RS26145 0.58 +1.7
1,412,446 - ABIE40_RS26145 0.58 -2.2
1,412,446 - ABIE40_RS26145 0.58 -0.3
1,412,446 - ABIE40_RS26145 0.58 +0.4
1,412,446 - ABIE40_RS26145 0.58 -0.3
1,412,541 + ABIE40_RS26145 0.64 -1.8
1,412,541 + ABIE40_RS26145 0.64 +0.2
1,412,542 - ABIE40_RS26145 0.64 -0.0
1,412,542 - ABIE40_RS26145 0.64 -1.2
1,412,805 + ABIE40_RS26145 0.81 -0.9
1,412,806 - ABIE40_RS26145 0.81 -3.0
1,412,806 - ABIE40_RS26145 0.81 +0.9
1,412,808 + ABIE40_RS26145 0.81 -0.5
1,412,809 - ABIE40_RS26145 0.81 -0.2
1,412,844 + ABIE40_RS26145 0.83 -2.1
1,412,845 - ABIE40_RS26145 0.83 -0.0
1,412,845 - ABIE40_RS26145 0.83 -0.2
1,412,892 + ABIE40_RS26145 0.86 -0.3
1,412,892 + ABIE40_RS26145 0.86 -0.4
1,412,892 + ABIE40_RS26145 0.86 +1.5
1,412,928 + ABIE40_RS26145 0.88 -2.4
1,412,929 - ABIE40_RS26145 0.88 +1.4
1,412,931 + ABIE40_RS26145 0.89 -0.2
1,412,931 + ABIE40_RS26145 0.89 +0.1
1,412,931 + ABIE40_RS26145 0.89 -0.5
1,412,931 + ABIE40_RS26145 0.89 +0.6
1,412,931 + ABIE40_RS26145 0.89 -0.4
1,412,931 + ABIE40_RS26145 0.89 +0.5
1,412,931 + ABIE40_RS26145 0.89 -0.0
1,412,932 - ABIE40_RS26145 0.89 -0.3
1,412,932 - ABIE40_RS26145 0.89 +0.8
1,412,932 - ABIE40_RS26145 0.89 +0.2
1,412,932 - ABIE40_RS26145 0.89 +1.1
1,412,932 - ABIE40_RS26145 0.89 -0.3
1,412,932 - ABIE40_RS26145 0.89 -0.4
1,412,932 - ABIE40_RS26145 0.89 +0.1
1,412,932 - ABIE40_RS26145 0.89 -1.6
1,413,021 + -1.1
1,413,021 + -1.4
1,413,021 + +0.2
1,413,022 - -1.1
1,413,022 - +0.0
1,413,109 + -0.6
1,413,109 + -1.3
1,413,109 + -0.0
1,413,110 - -1.5
1,413,110 - -0.3
1,413,110 - +0.5
1,413,113 + -1.0
1,413,113 + +0.3
1,413,113 + -0.2
1,413,114 - -0.2
1,413,132 + -0.3
1,413,132 + +2.3
1,413,133 - -2.5
1,413,171 + -0.9
1,413,171 + -2.1
1,413,441 + ABIE40_RS26150 0.80 -3.4
1,413,442 - ABIE40_RS26150 0.80 +2.3
1,413,478 + +0.4
1,413,479 - -0.1
1,413,479 - -0.3
1,413,760 + ABIE40_RS26155 0.31 -3.0
1,413,760 + ABIE40_RS26155 0.31 +1.8
1,413,761 - ABIE40_RS26155 0.32 -1.2
1,413,780 + ABIE40_RS26155 0.34 -0.0
1,413,780 + ABIE40_RS26155 0.34 +0.3
1,413,781 - ABIE40_RS26155 0.34 -0.3
1,414,153 - ABIE40_RS26155 0.77 -3.0
1,414,162 - ABIE40_RS26155 0.78 -1.0
1,414,212 + ABIE40_RS26155 0.84 +1.6
1,414,239 + ABIE40_RS26155 0.87 -0.5
1,414,239 + ABIE40_RS26155 0.87 -0.5
1,414,240 - ABIE40_RS26155 0.87 +0.7
1,414,240 - ABIE40_RS26155 0.87 -0.4
1,414,240 - ABIE40_RS26155 0.87 -0.4
1,414,240 - ABIE40_RS26155 0.87 +1.3
1,414,337 - +1.7
1,414,420 + ABIE40_RS26160 0.44 +0.6
1,414,420 + ABIE40_RS26160 0.44 -0.3
1,414,420 + ABIE40_RS26160 0.44 +0.2
1,414,421 - ABIE40_RS26160 0.44 -0.5
1,414,421 - ABIE40_RS26160 0.44 -1.3

Or see this region's nucleotide sequence