Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21550

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21545 and ABIE40_RS21550 are separated by 1 nucleotidesABIE40_RS21550 and ABIE40_RS21555 overlap by 8 nucleotidesABIE40_RS21555 and ABIE40_RS21560 are separated by 145 nucleotides ABIE40_RS21545: ABIE40_RS21545 - LLM class flavin-dependent oxidoreductase, at 429,280 to 430,356 _RS21545 ABIE40_RS21550: ABIE40_RS21550 - alpha/beta hydrolase, at 430,358 to 431,167 _RS21550 ABIE40_RS21555: ABIE40_RS21555 - carboxymuconolactone decarboxylase family protein, at 431,160 to 431,549 _RS21555 ABIE40_RS21560: ABIE40_RS21560 - transporter substrate-binding domain-containing protein, at 431,695 to 432,528 _RS21560 Position (kb) 430 431 432Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 429.499 kb on - strand, within ABIE40_RS21545at 429.499 kb on - strand, within ABIE40_RS21545at 429.610 kb on + strand, within ABIE40_RS21545at 429.610 kb on + strand, within ABIE40_RS21545at 429.610 kb on + strand, within ABIE40_RS21545at 429.610 kb on + strand, within ABIE40_RS21545at 429.610 kb on + strand, within ABIE40_RS21545at 429.611 kb on - strand, within ABIE40_RS21545at 429.611 kb on - strand, within ABIE40_RS21545at 429.616 kb on + strand, within ABIE40_RS21545at 429.617 kb on - strand, within ABIE40_RS21545at 429.617 kb on - strand, within ABIE40_RS21545at 429.667 kb on + strand, within ABIE40_RS21545at 429.668 kb on - strand, within ABIE40_RS21545at 429.668 kb on - strand, within ABIE40_RS21545at 429.668 kb on - strand, within ABIE40_RS21545at 429.668 kb on - strand, within ABIE40_RS21545at 429.733 kb on + strand, within ABIE40_RS21545at 429.734 kb on - strand, within ABIE40_RS21545at 429.734 kb on - strand, within ABIE40_RS21545at 429.734 kb on - strand, within ABIE40_RS21545at 429.986 kb on + strand, within ABIE40_RS21545at 430.103 kb on - strand, within ABIE40_RS21545at 430.129 kb on + strand, within ABIE40_RS21545at 430.129 kb on + strand, within ABIE40_RS21545at 430.129 kb on + strand, within ABIE40_RS21545at 430.129 kb on + strand, within ABIE40_RS21545at 430.129 kb on + strand, within ABIE40_RS21545at 430.129 kb on + strand, within ABIE40_RS21545at 430.129 kb on + strand, within ABIE40_RS21545at 430.129 kb on + strand, within ABIE40_RS21545at 430.129 kb on + strand, within ABIE40_RS21545at 430.129 kb on + strand, within ABIE40_RS21545at 430.129 kb on + strand, within ABIE40_RS21545at 430.129 kb on + strand, within ABIE40_RS21545at 430.130 kb on - strand, within ABIE40_RS21545at 430.130 kb on - strand, within ABIE40_RS21545at 430.201 kb on + strand, within ABIE40_RS21545at 430.201 kb on + strand, within ABIE40_RS21545at 430.202 kb on - strand, within ABIE40_RS21545at 430.202 kb on - strand, within ABIE40_RS21545at 430.202 kb on - strand, within ABIE40_RS21545at 430.225 kb on + strand, within ABIE40_RS21545at 430.225 kb on + strand, within ABIE40_RS21545at 430.225 kb on + strand, within ABIE40_RS21545at 430.225 kb on + strand, within ABIE40_RS21545at 430.225 kb on + strand, within ABIE40_RS21545at 430.226 kb on - strand, within ABIE40_RS21545at 430.226 kb on - strand, within ABIE40_RS21545at 430.226 kb on - strand, within ABIE40_RS21545at 430.226 kb on - strand, within ABIE40_RS21545at 430.226 kb on - strand, within ABIE40_RS21545at 430.226 kb on - strand, within ABIE40_RS21545at 430.379 kb on - strandat 430.403 kb on + strandat 430.404 kb on - strandat 430.417 kb on + strandat 430.457 kb on + strand, within ABIE40_RS21550at 430.457 kb on + strand, within ABIE40_RS21550at 430.863 kb on + strand, within ABIE40_RS21550at 430.863 kb on + strand, within ABIE40_RS21550at 430.863 kb on + strand, within ABIE40_RS21550at 430.863 kb on + strand, within ABIE40_RS21550at 430.863 kb on + strand, within ABIE40_RS21550at 430.863 kb on + strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.864 kb on - strand, within ABIE40_RS21550at 430.907 kb on + strand, within ABIE40_RS21550at 430.907 kb on + strand, within ABIE40_RS21550at 430.907 kb on + strand, within ABIE40_RS21550at 430.908 kb on - strand, within ABIE40_RS21550at 430.919 kb on + strand, within ABIE40_RS21550at 431.031 kb on - strand, within ABIE40_RS21550at 431.031 kb on - strand, within ABIE40_RS21550at 431.031 kb on - strand, within ABIE40_RS21550at 431.220 kb on + strand, within ABIE40_RS21555at 431.220 kb on + strand, within ABIE40_RS21555at 431.221 kb on - strand, within ABIE40_RS21555at 431.221 kb on - strand, within ABIE40_RS21555at 431.221 kb on - strand, within ABIE40_RS21555at 431.221 kb on - strand, within ABIE40_RS21555at 431.221 kb on - strand, within ABIE40_RS21555at 431.286 kb on + strand, within ABIE40_RS21555at 431.287 kb on - strand, within ABIE40_RS21555at 431.287 kb on - strand, within ABIE40_RS21555at 431.287 kb on - strand, within ABIE40_RS21555at 431.466 kb on + strand, within ABIE40_RS21555at 431.467 kb on - strand, within ABIE40_RS21555at 431.679 kb on + strandat 431.679 kb on + strandat 432.049 kb on + strand, within ABIE40_RS21560at 432.050 kb on - strand, within ABIE40_RS21560at 432.050 kb on - strand, within ABIE40_RS21560at 432.050 kb on - strand, within ABIE40_RS21560at 432.052 kb on + strand, within ABIE40_RS21560at 432.052 kb on + strand, within ABIE40_RS21560at 432.052 kb on + strand, within ABIE40_RS21560at 432.052 kb on + strand, within ABIE40_RS21560at 432.052 kb on + strand, within ABIE40_RS21560at 432.052 kb on + strand, within ABIE40_RS21560at 432.053 kb on - strand, within ABIE40_RS21560at 432.053 kb on - strand, within ABIE40_RS21560at 432.053 kb on - strand, within ABIE40_RS21560at 432.053 kb on - strand, within ABIE40_RS21560at 432.053 kb on - strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.055 kb on + strand, within ABIE40_RS21560at 432.056 kb on - strand, within ABIE40_RS21560at 432.056 kb on - strand, within ABIE40_RS21560at 432.056 kb on - strand, within ABIE40_RS21560at 432.056 kb on - strand, within ABIE40_RS21560at 432.056 kb on - strand, within ABIE40_RS21560at 432.057 kb on + strand, within ABIE40_RS21560at 432.057 kb on + strand, within ABIE40_RS21560at 432.057 kb on + strand, within ABIE40_RS21560at 432.058 kb on - strand, within ABIE40_RS21560at 432.160 kb on + strand, within ABIE40_RS21560at 432.160 kb on + strand, within ABIE40_RS21560at 432.160 kb on + strand, within ABIE40_RS21560at 432.161 kb on - strand, within ABIE40_RS21560

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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429,499 - ABIE40_RS21545 0.20 +0.1
429,499 - ABIE40_RS21545 0.20 -0.0
429,610 + ABIE40_RS21545 0.31 -0.0
429,610 + ABIE40_RS21545 0.31 -2.5
429,610 + ABIE40_RS21545 0.31 -0.6
429,610 + ABIE40_RS21545 0.31 -0.3
429,610 + ABIE40_RS21545 0.31 -1.9
429,611 - ABIE40_RS21545 0.31 +0.7
429,611 - ABIE40_RS21545 0.31 -2.2
429,616 + ABIE40_RS21545 0.31 +1.4
429,617 - ABIE40_RS21545 0.31 +0.4
429,617 - ABIE40_RS21545 0.31 +0.3
429,667 + ABIE40_RS21545 0.36 -1.5
429,668 - ABIE40_RS21545 0.36 -0.2
429,668 - ABIE40_RS21545 0.36 -0.2
429,668 - ABIE40_RS21545 0.36 +0.5
429,668 - ABIE40_RS21545 0.36 +0.3
429,733 + ABIE40_RS21545 0.42 +1.4
429,734 - ABIE40_RS21545 0.42 -1.8
429,734 - ABIE40_RS21545 0.42 -2.1
429,734 - ABIE40_RS21545 0.42 +0.2
429,986 + ABIE40_RS21545 0.66 -2.3
430,103 - ABIE40_RS21545 0.76 -0.9
430,129 + ABIE40_RS21545 0.79 -1.6
430,129 + ABIE40_RS21545 0.79 -1.5
430,129 + ABIE40_RS21545 0.79 +1.2
430,129 + ABIE40_RS21545 0.79 +0.2
430,129 + ABIE40_RS21545 0.79 -0.3
430,129 + ABIE40_RS21545 0.79 -0.9
430,129 + ABIE40_RS21545 0.79 -0.3
430,129 + ABIE40_RS21545 0.79 -1.6
430,129 + ABIE40_RS21545 0.79 +2.1
430,129 + ABIE40_RS21545 0.79 -1.0
430,129 + ABIE40_RS21545 0.79 -0.8
430,129 + ABIE40_RS21545 0.79 -0.0
430,130 - ABIE40_RS21545 0.79 -1.0
430,130 - ABIE40_RS21545 0.79 -2.1
430,201 + ABIE40_RS21545 0.86 +0.0
430,201 + ABIE40_RS21545 0.86 +0.7
430,202 - ABIE40_RS21545 0.86 -0.8
430,202 - ABIE40_RS21545 0.86 -1.1
430,202 - ABIE40_RS21545 0.86 +1.0
430,225 + ABIE40_RS21545 0.88 +1.7
430,225 + ABIE40_RS21545 0.88 -0.2
430,225 + ABIE40_RS21545 0.88 +0.3
430,225 + ABIE40_RS21545 0.88 -1.0
430,225 + ABIE40_RS21545 0.88 +1.2
430,226 - ABIE40_RS21545 0.88 +1.2
430,226 - ABIE40_RS21545 0.88 +0.4
430,226 - ABIE40_RS21545 0.88 -0.9
430,226 - ABIE40_RS21545 0.88 -2.8
430,226 - ABIE40_RS21545 0.88 +2.4
430,226 - ABIE40_RS21545 0.88 -1.2
430,379 - -0.5
430,403 + -2.5
430,404 - -0.2
430,417 + +2.3
430,457 + ABIE40_RS21550 0.12 +2.3
430,457 + ABIE40_RS21550 0.12 +0.2
430,863 + ABIE40_RS21550 0.62 +1.3
430,863 + ABIE40_RS21550 0.62 +0.8
430,863 + ABIE40_RS21550 0.62 -1.2
430,863 + ABIE40_RS21550 0.62 -0.6
430,863 + ABIE40_RS21550 0.62 +0.6
430,863 + ABIE40_RS21550 0.62 -1.8
430,864 - ABIE40_RS21550 0.62 -0.3
430,864 - ABIE40_RS21550 0.62 -1.9
430,864 - ABIE40_RS21550 0.62 -1.7
430,864 - ABIE40_RS21550 0.62 -1.3
430,864 - ABIE40_RS21550 0.62 +0.1
430,864 - ABIE40_RS21550 0.62 +0.4
430,864 - ABIE40_RS21550 0.62 -0.2
430,907 + ABIE40_RS21550 0.68 +0.3
430,907 + ABIE40_RS21550 0.68 +0.5
430,907 + ABIE40_RS21550 0.68 -2.3
430,908 - ABIE40_RS21550 0.68 -0.7
430,919 + ABIE40_RS21550 0.69 +0.5
431,031 - ABIE40_RS21550 0.83 +1.0
431,031 - ABIE40_RS21550 0.83 +0.8
431,031 - ABIE40_RS21550 0.83 -1.2
431,220 + ABIE40_RS21555 0.15 -1.1
431,220 + ABIE40_RS21555 0.15 -0.1
431,221 - ABIE40_RS21555 0.16 +0.8
431,221 - ABIE40_RS21555 0.16 -2.3
431,221 - ABIE40_RS21555 0.16 +0.4
431,221 - ABIE40_RS21555 0.16 -0.2
431,221 - ABIE40_RS21555 0.16 -2.1
431,286 + ABIE40_RS21555 0.32 +0.9
431,287 - ABIE40_RS21555 0.33 -3.1
431,287 - ABIE40_RS21555 0.33 +0.8
431,287 - ABIE40_RS21555 0.33 +0.5
431,466 + ABIE40_RS21555 0.78 -1.3
431,467 - ABIE40_RS21555 0.79 -0.0
431,679 + +0.3
431,679 + +0.4
432,049 + ABIE40_RS21560 0.42 +0.4
432,050 - ABIE40_RS21560 0.43 -0.9
432,050 - ABIE40_RS21560 0.43 +2.4
432,050 - ABIE40_RS21560 0.43 +0.9
432,052 + ABIE40_RS21560 0.43 +0.3
432,052 + ABIE40_RS21560 0.43 +1.6
432,052 + ABIE40_RS21560 0.43 +1.5
432,052 + ABIE40_RS21560 0.43 -0.1
432,052 + ABIE40_RS21560 0.43 -2.0
432,052 + ABIE40_RS21560 0.43 -0.9
432,053 - ABIE40_RS21560 0.43 +0.5
432,053 - ABIE40_RS21560 0.43 +0.7
432,053 - ABIE40_RS21560 0.43 -2.0
432,053 - ABIE40_RS21560 0.43 +0.4
432,053 - ABIE40_RS21560 0.43 +0.2
432,055 + ABIE40_RS21560 0.43 +0.8
432,055 + ABIE40_RS21560 0.43 -0.3
432,055 + ABIE40_RS21560 0.43 +1.2
432,055 + ABIE40_RS21560 0.43 +0.6
432,055 + ABIE40_RS21560 0.43 -1.2
432,055 + ABIE40_RS21560 0.43 -0.3
432,055 + ABIE40_RS21560 0.43 +1.4
432,055 + ABIE40_RS21560 0.43 -0.0
432,055 + ABIE40_RS21560 0.43 +0.9
432,055 + ABIE40_RS21560 0.43 -0.2
432,055 + ABIE40_RS21560 0.43 -0.8
432,055 + ABIE40_RS21560 0.43 -0.2
432,056 - ABIE40_RS21560 0.43 -1.6
432,056 - ABIE40_RS21560 0.43 +0.2
432,056 - ABIE40_RS21560 0.43 -1.0
432,056 - ABIE40_RS21560 0.43 -2.7
432,056 - ABIE40_RS21560 0.43 +1.1
432,057 + ABIE40_RS21560 0.43 +0.0
432,057 + ABIE40_RS21560 0.43 +1.3
432,057 + ABIE40_RS21560 0.43 +0.6
432,058 - ABIE40_RS21560 0.44 +1.1
432,160 + ABIE40_RS21560 0.56 +0.3
432,160 + ABIE40_RS21560 0.56 -0.1
432,160 + ABIE40_RS21560 0.56 +0.0
432,161 - ABIE40_RS21560 0.56 +0.6

Or see this region's nucleotide sequence