Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19645

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19635 and ABIE40_RS19640 overlap by 1 nucleotidesABIE40_RS19640 and ABIE40_RS19645 are separated by 186 nucleotidesABIE40_RS19645 and ABIE40_RS19650 are separated by 95 nucleotides ABIE40_RS19635: ABIE40_RS19635 - protocatechuate 3,4-dioxygenase subunit beta, at 21,733 to 22,482 _RS19635 ABIE40_RS19640: ABIE40_RS19640 - protocatechuate 3,4-dioxygenase subunit alpha, at 22,482 to 23,096 _RS19640 ABIE40_RS19645: ABIE40_RS19645 - acyltransferase, at 23,283 to 24,452 _RS19645 ABIE40_RS19650: ABIE40_RS19650 - 3-carboxy-cis,cis-muconate cycloisomerase, at 24,548 to 25,597 _RS19650 Position (kb) 23 24 25Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 22.288 kb on + strand, within ABIE40_RS19635at 22.288 kb on + strand, within ABIE40_RS19635at 22.288 kb on + strand, within ABIE40_RS19635at 22.289 kb on - strand, within ABIE40_RS19635at 22.289 kb on - strand, within ABIE40_RS19635at 22.289 kb on - strand, within ABIE40_RS19635at 22.332 kb on + strand, within ABIE40_RS19635at 22.389 kb on + strand, within ABIE40_RS19635at 22.389 kb on + strand, within ABIE40_RS19635at 22.389 kb on + strand, within ABIE40_RS19635at 22.390 kb on - strand, within ABIE40_RS19635at 22.390 kb on - strand, within ABIE40_RS19635at 22.390 kb on - strand, within ABIE40_RS19635at 22.390 kb on - strand, within ABIE40_RS19635at 22.414 kb on + strandat 22.414 kb on + strandat 22.415 kb on - strandat 22.415 kb on - strandat 22.415 kb on - strandat 22.500 kb on + strandat 22.500 kb on + strandat 22.536 kb on + strandat 22.536 kb on + strandat 22.536 kb on + strandat 22.536 kb on + strandat 22.536 kb on + strandat 22.537 kb on - strandat 22.537 kb on - strandat 22.537 kb on - strandat 22.537 kb on - strandat 22.537 kb on - strandat 22.584 kb on + strand, within ABIE40_RS19640at 22.584 kb on + strand, within ABIE40_RS19640at 22.585 kb on - strand, within ABIE40_RS19640at 22.585 kb on - strand, within ABIE40_RS19640at 22.728 kb on + strand, within ABIE40_RS19640at 22.729 kb on - strand, within ABIE40_RS19640at 22.730 kb on + strand, within ABIE40_RS19640at 22.731 kb on - strand, within ABIE40_RS19640at 22.815 kb on + strand, within ABIE40_RS19640at 22.816 kb on - strand, within ABIE40_RS19640at 22.816 kb on - strand, within ABIE40_RS19640at 22.898 kb on - strand, within ABIE40_RS19640at 22.935 kb on + strand, within ABIE40_RS19640at 22.935 kb on + strand, within ABIE40_RS19640at 22.935 kb on + strand, within ABIE40_RS19640at 22.935 kb on + strand, within ABIE40_RS19640at 22.936 kb on - strand, within ABIE40_RS19640at 22.936 kb on - strand, within ABIE40_RS19640at 22.936 kb on - strand, within ABIE40_RS19640at 22.936 kb on - strand, within ABIE40_RS19640at 23.015 kb on + strand, within ABIE40_RS19640at 23.015 kb on + strand, within ABIE40_RS19640at 23.015 kb on + strand, within ABIE40_RS19640at 23.016 kb on - strand, within ABIE40_RS19640at 23.016 kb on - strand, within ABIE40_RS19640at 23.087 kb on - strandat 23.091 kb on - strandat 23.366 kb on + strandat 23.445 kb on + strand, within ABIE40_RS19645at 23.625 kb on + strand, within ABIE40_RS19645at 23.625 kb on + strand, within ABIE40_RS19645at 23.625 kb on + strand, within ABIE40_RS19645at 23.625 kb on + strand, within ABIE40_RS19645at 23.626 kb on - strand, within ABIE40_RS19645at 23.626 kb on - strand, within ABIE40_RS19645at 23.626 kb on - strand, within ABIE40_RS19645at 23.628 kb on + strand, within ABIE40_RS19645at 23.685 kb on + strand, within ABIE40_RS19645at 23.686 kb on - strand, within ABIE40_RS19645at 23.769 kb on + strand, within ABIE40_RS19645at 23.769 kb on + strand, within ABIE40_RS19645at 23.769 kb on + strand, within ABIE40_RS19645at 23.769 kb on + strand, within ABIE40_RS19645at 23.770 kb on - strand, within ABIE40_RS19645at 23.770 kb on - strand, within ABIE40_RS19645at 23.770 kb on - strand, within ABIE40_RS19645at 23.770 kb on - strand, within ABIE40_RS19645at 23.770 kb on - strand, within ABIE40_RS19645at 23.770 kb on - strand, within ABIE40_RS19645at 23.874 kb on + strand, within ABIE40_RS19645at 23.874 kb on + strand, within ABIE40_RS19645at 23.976 kb on + strand, within ABIE40_RS19645at 23.976 kb on + strand, within ABIE40_RS19645at 23.977 kb on - strand, within ABIE40_RS19645at 23.977 kb on - strand, within ABIE40_RS19645at 24.049 kb on + strand, within ABIE40_RS19645at 24.117 kb on + strand, within ABIE40_RS19645at 24.117 kb on + strand, within ABIE40_RS19645at 24.117 kb on + strand, within ABIE40_RS19645at 24.117 kb on + strand, within ABIE40_RS19645at 24.117 kb on + strand, within ABIE40_RS19645at 24.118 kb on - strand, within ABIE40_RS19645at 24.118 kb on - strand, within ABIE40_RS19645at 24.118 kb on - strand, within ABIE40_RS19645at 24.180 kb on + strand, within ABIE40_RS19645at 24.195 kb on + strand, within ABIE40_RS19645at 24.195 kb on + strand, within ABIE40_RS19645at 24.195 kb on + strand, within ABIE40_RS19645at 24.195 kb on + strand, within ABIE40_RS19645at 24.196 kb on - strand, within ABIE40_RS19645at 24.196 kb on - strand, within ABIE40_RS19645at 24.201 kb on + strand, within ABIE40_RS19645at 24.202 kb on - strand, within ABIE40_RS19645at 24.282 kb on + strand, within ABIE40_RS19645at 24.283 kb on + strand, within ABIE40_RS19645at 24.283 kb on - strand, within ABIE40_RS19645at 24.283 kb on - strand, within ABIE40_RS19645at 24.283 kb on - strand, within ABIE40_RS19645at 24.414 kb on - strandat 24.450 kb on + strandat 24.450 kb on + strandat 24.450 kb on + strandat 24.450 kb on + strandat 24.614 kb on + strandat 24.614 kb on + strandat 24.614 kb on + strandat 24.614 kb on + strandat 24.763 kb on - strand, within ABIE40_RS19650at 24.853 kb on + strand, within ABIE40_RS19650at 25.060 kb on + strand, within ABIE40_RS19650

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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22,288 + ABIE40_RS19635 0.74 -2.7
22,288 + ABIE40_RS19635 0.74 -4.6
22,288 + ABIE40_RS19635 0.74 -1.8
22,289 - ABIE40_RS19635 0.74 -2.7
22,289 - ABIE40_RS19635 0.74 -4.1
22,289 - ABIE40_RS19635 0.74 +0.7
22,332 + ABIE40_RS19635 0.80 -4.8
22,389 + ABIE40_RS19635 0.87 -1.6
22,389 + ABIE40_RS19635 0.87 -2.0
22,389 + ABIE40_RS19635 0.87 -4.2
22,390 - ABIE40_RS19635 0.88 -2.3
22,390 - ABIE40_RS19635 0.88 -3.6
22,390 - ABIE40_RS19635 0.88 -4.9
22,390 - ABIE40_RS19635 0.88 -1.5
22,414 + -3.1
22,414 + -1.4
22,415 - -2.7
22,415 - -3.9
22,415 - -0.7
22,500 + -4.6
22,500 + -4.2
22,536 + -0.8
22,536 + -4.1
22,536 + -1.1
22,536 + -2.0
22,536 + -2.1
22,537 - -3.2
22,537 - -1.8
22,537 - -1.8
22,537 - -0.7
22,537 - -0.3
22,584 + ABIE40_RS19640 0.17 -4.6
22,584 + ABIE40_RS19640 0.17 -3.8
22,585 - ABIE40_RS19640 0.17 -2.7
22,585 - ABIE40_RS19640 0.17 -1.7
22,728 + ABIE40_RS19640 0.40 -0.7
22,729 - ABIE40_RS19640 0.40 -0.3
22,730 + ABIE40_RS19640 0.40 -3.0
22,731 - ABIE40_RS19640 0.40 -4.5
22,815 + ABIE40_RS19640 0.54 -4.2
22,816 - ABIE40_RS19640 0.54 -1.9
22,816 - ABIE40_RS19640 0.54 -3.2
22,898 - ABIE40_RS19640 0.68 -3.2
22,935 + ABIE40_RS19640 0.74 -2.8
22,935 + ABIE40_RS19640 0.74 -3.9
22,935 + ABIE40_RS19640 0.74 -4.3
22,935 + ABIE40_RS19640 0.74 +2.3
22,936 - ABIE40_RS19640 0.74 -3.6
22,936 - ABIE40_RS19640 0.74 -2.4
22,936 - ABIE40_RS19640 0.74 -1.9
22,936 - ABIE40_RS19640 0.74 -6.0
23,015 + ABIE40_RS19640 0.87 -2.9
23,015 + ABIE40_RS19640 0.87 +2.3
23,015 + ABIE40_RS19640 0.87 -2.8
23,016 - ABIE40_RS19640 0.87 -5.5
23,016 - ABIE40_RS19640 0.87 -1.0
23,087 - -4.9
23,091 - +0.5
23,366 + -2.9
23,445 + ABIE40_RS19645 0.14 +1.0
23,625 + ABIE40_RS19645 0.29 -1.4
23,625 + ABIE40_RS19645 0.29 +1.5
23,625 + ABIE40_RS19645 0.29 -2.0
23,625 + ABIE40_RS19645 0.29 -3.9
23,626 - ABIE40_RS19645 0.29 -2.0
23,626 - ABIE40_RS19645 0.29 -1.9
23,626 - ABIE40_RS19645 0.29 -3.2
23,628 + ABIE40_RS19645 0.29 -2.2
23,685 + ABIE40_RS19645 0.34 -2.3
23,686 - ABIE40_RS19645 0.34 -3.7
23,769 + ABIE40_RS19645 0.42 -1.1
23,769 + ABIE40_RS19645 0.42 -2.4
23,769 + ABIE40_RS19645 0.42 -3.0
23,769 + ABIE40_RS19645 0.42 -3.8
23,770 - ABIE40_RS19645 0.42 -2.3
23,770 - ABIE40_RS19645 0.42 -2.7
23,770 - ABIE40_RS19645 0.42 -2.1
23,770 - ABIE40_RS19645 0.42 -4.8
23,770 - ABIE40_RS19645 0.42 -2.0
23,770 - ABIE40_RS19645 0.42 -0.7
23,874 + ABIE40_RS19645 0.51 -3.1
23,874 + ABIE40_RS19645 0.51 -4.0
23,976 + ABIE40_RS19645 0.59 -1.0
23,976 + ABIE40_RS19645 0.59 -3.1
23,977 - ABIE40_RS19645 0.59 -1.4
23,977 - ABIE40_RS19645 0.59 -1.1
24,049 + ABIE40_RS19645 0.65 -2.2
24,117 + ABIE40_RS19645 0.71 -1.7
24,117 + ABIE40_RS19645 0.71 -1.8
24,117 + ABIE40_RS19645 0.71 -3.7
24,117 + ABIE40_RS19645 0.71 -4.9
24,117 + ABIE40_RS19645 0.71 -3.0
24,118 - ABIE40_RS19645 0.71 -1.7
24,118 - ABIE40_RS19645 0.71 -2.5
24,118 - ABIE40_RS19645 0.71 -2.1
24,180 + ABIE40_RS19645 0.77 -3.5
24,195 + ABIE40_RS19645 0.78 -1.5
24,195 + ABIE40_RS19645 0.78 -1.8
24,195 + ABIE40_RS19645 0.78 -1.2
24,195 + ABIE40_RS19645 0.78 -1.9
24,196 - ABIE40_RS19645 0.78 -1.0
24,196 - ABIE40_RS19645 0.78 -1.8
24,201 + ABIE40_RS19645 0.78 -3.6
24,202 - ABIE40_RS19645 0.79 -2.5
24,282 + ABIE40_RS19645 0.85 -1.1
24,283 + ABIE40_RS19645 0.85 -1.0
24,283 - ABIE40_RS19645 0.85 -1.2
24,283 - ABIE40_RS19645 0.85 -3.3
24,283 - ABIE40_RS19645 0.85 +0.3
24,414 - -1.9
24,450 + -1.9
24,450 + -3.7
24,450 + -1.4
24,450 + -0.2
24,614 + -1.7
24,614 + -2.5
24,614 + -4.0
24,614 + -1.9
24,763 - ABIE40_RS19650 0.20 -4.4
24,853 + ABIE40_RS19650 0.29 -2.1
25,060 + ABIE40_RS19650 0.49 -2.3

Or see this region's nucleotide sequence