Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS19560

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS19550 and ABIE40_RS19555 are separated by 11 nucleotidesABIE40_RS19555 and ABIE40_RS19560 overlap by 4 nucleotidesABIE40_RS19560 and ABIE40_RS19565 are separated by 153 nucleotidesABIE40_RS19565 and ABIE40_RS19570 are separated by 0 nucleotides ABIE40_RS19550: ABIE40_RS19550 - 3-oxoadipyl-CoA thiolase, at 5,790 to 6,995 _RS19550 ABIE40_RS19555: ABIE40_RS19555 - CoA transferase subunit B, at 7,007 to 7,696 _RS19555 ABIE40_RS19560: ABIE40_RS19560 - 3-oxoacid CoA-transferase subunit A, at 7,693 to 8,400 _RS19560 ABIE40_RS19565: ABIE40_RS19565 - IclR family transcriptional regulator, at 8,554 to 9,309 _RS19565 ABIE40_RS19570: ABIE40_RS19570 - helix-turn-helix domain-containing protein, at 9,310 to 10,191 _RS19570 Position (kb) 7 8 9Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 6.746 kb on + strand, within ABIE40_RS19550at 6.746 kb on + strand, within ABIE40_RS19550at 6.753 kb on + strand, within ABIE40_RS19550at 6.754 kb on - strand, within ABIE40_RS19550at 6.970 kb on + strandat 6.970 kb on + strandat 6.971 kb on - strandat 6.971 kb on - strandat 6.971 kb on - strandat 7.008 kb on + strandat 7.009 kb on - strandat 7.048 kb on + strandat 7.048 kb on + strandat 7.156 kb on + strand, within ABIE40_RS19555at 7.156 kb on + strand, within ABIE40_RS19555at 7.157 kb on - strand, within ABIE40_RS19555at 7.157 kb on - strand, within ABIE40_RS19555at 7.158 kb on + strand, within ABIE40_RS19555at 7.158 kb on + strand, within ABIE40_RS19555at 7.159 kb on - strand, within ABIE40_RS19555at 7.159 kb on - strand, within ABIE40_RS19555at 7.159 kb on - strand, within ABIE40_RS19555at 7.360 kb on - strand, within ABIE40_RS19555at 7.696 kb on + strandat 7.696 kb on + strandat 7.696 kb on + strandat 7.696 kb on + strandat 7.696 kb on + strandat 7.696 kb on + strandat 7.696 kb on + strandat 7.696 kb on + strandat 7.696 kb on + strandat 7.696 kb on + strandat 7.696 kb on + strandat 7.696 kb on + strandat 7.696 kb on + strandat 7.697 kb on - strandat 7.697 kb on - strandat 7.697 kb on - strandat 7.697 kb on - strandat 7.697 kb on - strandat 7.697 kb on - strandat 7.697 kb on - strandat 7.697 kb on - strandat 7.697 kb on - strandat 7.700 kb on + strandat 7.701 kb on - strandat 7.701 kb on - strandat 7.786 kb on + strand, within ABIE40_RS19560at 7.786 kb on + strand, within ABIE40_RS19560at 7.786 kb on + strand, within ABIE40_RS19560at 7.787 kb on - strand, within ABIE40_RS19560at 7.890 kb on + strand, within ABIE40_RS19560at 7.891 kb on - strand, within ABIE40_RS19560at 7.891 kb on - strand, within ABIE40_RS19560at 7.895 kb on + strand, within ABIE40_RS19560at 7.896 kb on - strand, within ABIE40_RS19560at 7.896 kb on - strand, within ABIE40_RS19560at 7.973 kb on + strand, within ABIE40_RS19560at 7.973 kb on + strand, within ABIE40_RS19560at 7.973 kb on + strand, within ABIE40_RS19560at 7.973 kb on + strand, within ABIE40_RS19560at 7.973 kb on + strand, within ABIE40_RS19560at 7.973 kb on + strand, within ABIE40_RS19560at 7.973 kb on + strand, within ABIE40_RS19560at 7.974 kb on - strand, within ABIE40_RS19560at 7.974 kb on - strand, within ABIE40_RS19560at 8.040 kb on + strand, within ABIE40_RS19560at 8.040 kb on + strand, within ABIE40_RS19560at 8.042 kb on + strand, within ABIE40_RS19560at 8.042 kb on + strand, within ABIE40_RS19560at 8.042 kb on + strand, within ABIE40_RS19560at 8.042 kb on + strand, within ABIE40_RS19560at 8.042 kb on + strand, within ABIE40_RS19560at 8.042 kb on + strand, within ABIE40_RS19560at 8.042 kb on + strand, within ABIE40_RS19560at 8.042 kb on + strand, within ABIE40_RS19560at 8.042 kb on + strand, within ABIE40_RS19560at 8.043 kb on - strand, within ABIE40_RS19560at 8.043 kb on - strand, within ABIE40_RS19560at 8.043 kb on - strand, within ABIE40_RS19560at 8.043 kb on - strand, within ABIE40_RS19560at 8.043 kb on - strand, within ABIE40_RS19560at 8.043 kb on - strand, within ABIE40_RS19560at 8.043 kb on - strand, within ABIE40_RS19560at 8.043 kb on - strand, within ABIE40_RS19560at 8.091 kb on + strand, within ABIE40_RS19560at 8.092 kb on - strand, within ABIE40_RS19560at 8.132 kb on + strand, within ABIE40_RS19560at 8.132 kb on + strand, within ABIE40_RS19560at 8.132 kb on + strand, within ABIE40_RS19560at 8.133 kb on - strand, within ABIE40_RS19560at 8.220 kb on + strand, within ABIE40_RS19560at 8.259 kb on + strand, within ABIE40_RS19560at 8.259 kb on + strand, within ABIE40_RS19560at 8.295 kb on + strand, within ABIE40_RS19560at 8.295 kb on + strand, within ABIE40_RS19560at 8.295 kb on + strand, within ABIE40_RS19560at 8.295 kb on + strand, within ABIE40_RS19560at 8.296 kb on - strand, within ABIE40_RS19560at 8.296 kb on - strand, within ABIE40_RS19560at 8.296 kb on - strand, within ABIE40_RS19560at 8.359 kb on - strandat 8.456 kb on + strandat 8.456 kb on + strandat 8.457 kb on - strandat 8.457 kb on - strandat 8.549 kb on - strandat 8.717 kb on - strand, within ABIE40_RS19565at 8.717 kb on - strand, within ABIE40_RS19565at 8.725 kb on + strand, within ABIE40_RS19565at 8.779 kb on + strand, within ABIE40_RS19565at 8.780 kb on - strand, within ABIE40_RS19565at 8.890 kb on + strand, within ABIE40_RS19565at 8.890 kb on + strand, within ABIE40_RS19565at 8.890 kb on + strand, within ABIE40_RS19565at 8.891 kb on - strand, within ABIE40_RS19565at 8.891 kb on - strand, within ABIE40_RS19565at 8.892 kb on + strand, within ABIE40_RS19565at 8.892 kb on + strand, within ABIE40_RS19565at 8.959 kb on + strand, within ABIE40_RS19565at 8.959 kb on + strand, within ABIE40_RS19565at 9.208 kb on - strand, within ABIE40_RS19565at 9.256 kb on + strandat 9.392 kb on + strandat 9.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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6,746 + ABIE40_RS19550 0.79 -3.2
6,746 + ABIE40_RS19550 0.79 -4.7
6,753 + ABIE40_RS19550 0.80 -1.0
6,754 - ABIE40_RS19550 0.80 -4.6
6,970 + -2.9
6,970 + -0.3
6,971 - -0.8
6,971 - -3.7
6,971 - -3.4
7,008 + +0.7
7,009 - +0.6
7,048 + -5.0
7,048 + -1.7
7,156 + ABIE40_RS19555 0.22 -2.4
7,156 + ABIE40_RS19555 0.22 -3.8
7,157 - ABIE40_RS19555 0.22 -3.1
7,157 - ABIE40_RS19555 0.22 -1.1
7,158 + ABIE40_RS19555 0.22 -3.5
7,158 + ABIE40_RS19555 0.22 -3.3
7,159 - ABIE40_RS19555 0.22 -1.6
7,159 - ABIE40_RS19555 0.22 -4.2
7,159 - ABIE40_RS19555 0.22 -3.3
7,360 - ABIE40_RS19555 0.51 -4.1
7,696 + -3.0
7,696 + -1.3
7,696 + -5.4
7,696 + -2.8
7,696 + -4.7
7,696 + -3.1
7,696 + -1.5
7,696 + -3.7
7,696 + -5.1
7,696 + -4.4
7,696 + -2.7
7,696 + -1.7
7,696 + -1.8
7,697 - -4.2
7,697 - -2.1
7,697 - -3.5
7,697 - -3.2
7,697 - -0.3
7,697 - -3.0
7,697 - -2.7
7,697 - -2.2
7,697 - -1.6
7,700 + -3.5
7,701 - -0.3
7,701 - -4.3
7,786 + ABIE40_RS19560 0.13 -4.3
7,786 + ABIE40_RS19560 0.13 -0.8
7,786 + ABIE40_RS19560 0.13 -3.6
7,787 - ABIE40_RS19560 0.13 -2.5
7,890 + ABIE40_RS19560 0.28 -2.5
7,891 - ABIE40_RS19560 0.28 -4.1
7,891 - ABIE40_RS19560 0.28 -1.3
7,895 + ABIE40_RS19560 0.29 -4.1
7,896 - ABIE40_RS19560 0.29 -1.1
7,896 - ABIE40_RS19560 0.29 -1.1
7,973 + ABIE40_RS19560 0.40 -5.0
7,973 + ABIE40_RS19560 0.40 -4.1
7,973 + ABIE40_RS19560 0.40 -0.7
7,973 + ABIE40_RS19560 0.40 -2.1
7,973 + ABIE40_RS19560 0.40 -0.7
7,973 + ABIE40_RS19560 0.40 -0.7
7,973 + ABIE40_RS19560 0.40 +0.7
7,974 - ABIE40_RS19560 0.40 -2.1
7,974 - ABIE40_RS19560 0.40 -2.8
8,040 + ABIE40_RS19560 0.49 -1.8
8,040 + ABIE40_RS19560 0.49 -5.1
8,042 + ABIE40_RS19560 0.49 -5.5
8,042 + ABIE40_RS19560 0.49 -0.7
8,042 + ABIE40_RS19560 0.49 -1.3
8,042 + ABIE40_RS19560 0.49 -2.9
8,042 + ABIE40_RS19560 0.49 -2.3
8,042 + ABIE40_RS19560 0.49 -5.0
8,042 + ABIE40_RS19560 0.49 -4.3
8,042 + ABIE40_RS19560 0.49 -3.7
8,042 + ABIE40_RS19560 0.49 -4.7
8,043 - ABIE40_RS19560 0.49 -3.4
8,043 - ABIE40_RS19560 0.49 -3.5
8,043 - ABIE40_RS19560 0.49 -5.2
8,043 - ABIE40_RS19560 0.49 -0.3
8,043 - ABIE40_RS19560 0.49 -1.7
8,043 - ABIE40_RS19560 0.49 -2.2
8,043 - ABIE40_RS19560 0.49 -1.4
8,043 - ABIE40_RS19560 0.49 -4.0
8,091 + ABIE40_RS19560 0.56 -3.4
8,092 - ABIE40_RS19560 0.56 -2.8
8,132 + ABIE40_RS19560 0.62 -3.1
8,132 + ABIE40_RS19560 0.62 -3.3
8,132 + ABIE40_RS19560 0.62 -1.1
8,133 - ABIE40_RS19560 0.62 -4.8
8,220 + ABIE40_RS19560 0.74 -1.3
8,259 + ABIE40_RS19560 0.80 -3.2
8,259 + ABIE40_RS19560 0.80 -2.0
8,295 + ABIE40_RS19560 0.85 -1.0
8,295 + ABIE40_RS19560 0.85 -2.1
8,295 + ABIE40_RS19560 0.85 -3.5
8,295 + ABIE40_RS19560 0.85 -0.3
8,296 - ABIE40_RS19560 0.85 -2.4
8,296 - ABIE40_RS19560 0.85 -3.8
8,296 - ABIE40_RS19560 0.85 -0.6
8,359 - -2.7
8,456 + -2.3
8,456 + -2.4
8,457 - -3.7
8,457 - -3.4
8,549 - -2.8
8,717 - ABIE40_RS19565 0.22 -3.5
8,717 - ABIE40_RS19565 0.22 -2.4
8,725 + ABIE40_RS19565 0.23 -3.1
8,779 + ABIE40_RS19565 0.30 -2.2
8,780 - ABIE40_RS19565 0.30 -1.0
8,890 + ABIE40_RS19565 0.44 -2.2
8,890 + ABIE40_RS19565 0.44 +0.5
8,890 + ABIE40_RS19565 0.44 +0.4
8,891 - ABIE40_RS19565 0.45 +0.0
8,891 - ABIE40_RS19565 0.45 +0.9
8,892 + ABIE40_RS19565 0.45 +0.6
8,892 + ABIE40_RS19565 0.45 -0.5
8,959 + ABIE40_RS19565 0.54 -2.9
8,959 + ABIE40_RS19565 0.54 -0.7
9,208 - ABIE40_RS19565 0.87 -1.0
9,256 + -2.4
9,392 + +2.0
9,393 - +1.8

Or see this region's nucleotide sequence