Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS15610

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS15605 and ABIE40_RS15610 are separated by 8 nucleotidesABIE40_RS15610 and ABIE40_RS15615 are separated by 21 nucleotides ABIE40_RS15605: ABIE40_RS15605 - hypothetical protein, at 3,097,499 to 3,098,635 _RS15605 ABIE40_RS15610: ABIE40_RS15610 - protein TolR, at 3,098,644 to 3,099,099 _RS15610 ABIE40_RS15615: ABIE40_RS15615 - protein TolQ, at 3,099,121 to 3,099,840 _RS15615 Position (kb) 3098 3099 3100Strain fitness (log2 ratio) -2 -1 0 1at 3099.931 kb on - strandat 3100.026 kb on + strandat 3100.027 kb on - strandat 3100.035 kb on - strandat 3100.035 kb on - strandat 3100.037 kb on + strandat 3100.037 kb on + strandat 3100.037 kb on + strandat 3100.037 kb on + strandat 3100.038 kb on - strandat 3100.038 kb on - strandat 3100.038 kb on - strandat 3100.044 kb on - strandat 3100.044 kb on - strandat 3100.046 kb on + strandat 3100.046 kb on + strandat 3100.046 kb on + strandat 3100.047 kb on - strandat 3100.055 kb on - strandat 3100.079 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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3,099,931 - -0.2
3,100,026 + -0.8
3,100,027 - +0.4
3,100,035 - -0.2
3,100,035 - +0.4
3,100,037 + -0.4
3,100,037 + -0.5
3,100,037 + -0.5
3,100,037 + -1.0
3,100,038 - +0.0
3,100,038 - +0.8
3,100,038 - -0.3
3,100,044 - +0.3
3,100,044 - -0.3
3,100,046 + +0.4
3,100,046 + -0.2
3,100,046 + -1.9
3,100,047 - +0.6
3,100,055 - +0.1
3,100,079 + +0.2

Or see this region's nucleotide sequence