Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS11875

Experiment: L-Arabinose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS11865 and ABIE40_RS11870 are separated by 2 nucleotidesABIE40_RS11870 and ABIE40_RS11875 are separated by 1 nucleotidesABIE40_RS11875 and ABIE40_RS11880 are separated by 17 nucleotides ABIE40_RS11865: ABIE40_RS11865 - penicillin-binding protein 2, at 2,309,644 to 2,311,395 _RS11865 ABIE40_RS11870: ABIE40_RS11870 - hypothetical protein, at 2,311,398 to 2,311,871 _RS11870 ABIE40_RS11875: ABIE40_RS11875 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 2,311,873 to 2,312,898 _RS11875 ABIE40_RS11880: ABIE40_RS11880 - division/cell wall cluster transcriptional repressor MraZ, at 2,312,916 to 2,313,353 _RS11880 Position (kb) 2311 2312 2313Strain fitness (log2 ratio) -3 -2 -1 0 1at 2311.400 kb on - strandat 2311.400 kb on - strandat 2311.906 kb on - strandat 2312.029 kb on - strand, within ABIE40_RS11875at 2312.029 kb on - strand, within ABIE40_RS11875at 2312.752 kb on - strand, within ABIE40_RS11875at 2313.245 kb on - strand, within ABIE40_RS11880at 2313.245 kb on - strand, within ABIE40_RS11880at 2313.245 kb on - strand, within ABIE40_RS11880at 2313.549 kb on - strandat 2313.603 kb on + strandat 2313.666 kb on - strandat 2313.679 kb on + strandat 2313.681 kb on + strandat 2313.707 kb on + strandat 2313.759 kb on + strandat 2313.759 kb on + strandat 2313.770 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
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2,311,400 - -0.3
2,311,400 - -1.7
2,311,906 - -3.1
2,312,029 - ABIE40_RS11875 0.15 -0.3
2,312,029 - ABIE40_RS11875 0.15 -1.5
2,312,752 - ABIE40_RS11875 0.86 -2.3
2,313,245 - ABIE40_RS11880 0.75 -1.5
2,313,245 - ABIE40_RS11880 0.75 -1.5
2,313,245 - ABIE40_RS11880 0.75 -2.5
2,313,549 - -1.1
2,313,603 + -1.2
2,313,666 - +0.6
2,313,679 + +1.5
2,313,681 + -0.6
2,313,707 + +1.3
2,313,759 + -0.4
2,313,759 + -1.7
2,313,770 + +0.2

Or see this region's nucleotide sequence