Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS11865 and ABIE40_RS11870 are separated by 2 nucleotides ABIE40_RS11870 and ABIE40_RS11875 are separated by 1 nucleotides ABIE40_RS11875 and ABIE40_RS11880 are separated by 17 nucleotides
ABIE40_RS11865: ABIE40_RS11865 - penicillin-binding protein 2, at 2,309,644 to 2,311,395
_RS11865
ABIE40_RS11870: ABIE40_RS11870 - hypothetical protein, at 2,311,398 to 2,311,871
_RS11870
ABIE40_RS11875: ABIE40_RS11875 - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 2,311,873 to 2,312,898
_RS11875
ABIE40_RS11880: ABIE40_RS11880 - division/cell wall cluster transcriptional repressor MraZ, at 2,312,916 to 2,313,353
_RS11880
Position (kb)
2311
2312
2313 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2311.400 kb on - strand at 2311.400 kb on - strand at 2311.906 kb on - strand at 2312.029 kb on - strand, within ABIE40_RS11875 at 2312.029 kb on - strand, within ABIE40_RS11875 at 2312.752 kb on - strand, within ABIE40_RS11875 at 2313.245 kb on - strand, within ABIE40_RS11880 at 2313.245 kb on - strand, within ABIE40_RS11880 at 2313.245 kb on - strand, within ABIE40_RS11880 at 2313.549 kb on - strand at 2313.603 kb on + strand at 2313.666 kb on - strand at 2313.679 kb on + strand at 2313.681 kb on + strand at 2313.707 kb on + strand at 2313.759 kb on + strand at 2313.759 kb on + strand at 2313.770 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 2,311,400 - -0.3 2,311,400 - -1.7 2,311,906 - -3.1 2,312,029 - ABIE40_RS11875 0.15 -0.3 2,312,029 - ABIE40_RS11875 0.15 -1.5 2,312,752 - ABIE40_RS11875 0.86 -2.3 2,313,245 - ABIE40_RS11880 0.75 -1.5 2,313,245 - ABIE40_RS11880 0.75 -1.5 2,313,245 - ABIE40_RS11880 0.75 -2.5 2,313,549 - -1.1 2,313,603 + -1.2 2,313,666 - +0.6 2,313,679 + +1.5 2,313,681 + -0.6 2,313,707 + +1.3 2,313,759 + -0.4 2,313,759 + -1.7 2,313,770 + +0.2
Or see this region's nucleotide sequence