Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS08635

Experiment: L-Arabinose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Arabinose (C)
1,665,239	-		ABIE40_RS08630	0.39	+4.7
1,665,239	-		ABIE40_RS08630	0.39	-1.5
1,665,262	-		ABIE40_RS08630	0.41	-1.0
1,665,262	-		ABIE40_RS08630	0.41	-0.3
1,665,329	+		ABIE40_RS08630	0.46	-1.2
1,665,329	+		ABIE40_RS08630	0.46	+0.9
1,665,330	-		ABIE40_RS08630	0.46	-0.7
1,665,330	-		ABIE40_RS08630	0.46	-0.2
1,665,656	+		ABIE40_RS08630	0.72	-0.3
1,665,838	+		ABIE40_RS08630	0.86	+0.1
1,665,838	+		ABIE40_RS08630	0.86	-1.4
1,666,009	+				-0.1
1,666,009	+				+2.1
1,666,009	+				-2.3
1,666,009	+				-1.3
1,666,010	-				-0.3
1,666,010	-				-0.1
1,666,010	-				+0.2
1,666,010	-				-0.3
1,666,010	-				+1.0
1,666,012	+				-1.0
1,666,035	+				+1.6
1,666,036	-				-0.1
1,666,036	-				-0.7
1,666,049	+				-0.4
1,666,049	+				-1.2
1,666,050	-				-0.9
1,666,128	+				-0.5
1,666,128	+				-0.0
1,666,128	+				-0.9
1,666,129	-				+0.2
1,666,129	-				-3.1
1,666,129	-				-0.5
1,666,129	-				-2.4
1,666,129	-				+0.7
1,666,129	-				+0.1
1,666,129	-				-1.0
1,666,129	-				+0.4
1,666,133	-				-1.1
1,666,133	-				+1.7
1,666,133	-				-1.8
1,666,133	-				+1.1
1,666,161	-				-1.3
1,666,202	+				+0.3
1,666,220	+				+0.9
1,666,220	+				-2.1
1,666,220	+				+0.3
1,666,221	-				-2.4
1,666,221	-				-2.2
1,666,221	-				-2.3
1,666,221	-				-2.1
1,666,221	-				-0.3
1,666,221	-				-0.3
1,666,221	-				+0.1
1,666,370	+				-2.7
1,666,406	+		ABIE40_RS08635	0.11	-2.7
1,666,406	+		ABIE40_RS08635	0.11	-3.5
1,666,407	-		ABIE40_RS08635	0.11	-0.3
1,666,407	-		ABIE40_RS08635	0.11	+0.3
1,666,407	-		ABIE40_RS08635	0.11	-1.1
1,666,407	-		ABIE40_RS08635	0.11	-0.2
1,666,524	+		ABIE40_RS08635	0.17	-0.6
1,666,525	-		ABIE40_RS08635	0.17	-0.5
1,666,551	-		ABIE40_RS08635	0.19	-3.4
1,666,551	-		ABIE40_RS08635	0.19	+1.3
1,666,551	-		ABIE40_RS08635	0.19	-1.7
1,666,631	+		ABIE40_RS08635	0.23	-2.1
1,666,631	+		ABIE40_RS08635	0.23	-1.7
1,666,632	-		ABIE40_RS08635	0.23	-1.3
1,666,646	+		ABIE40_RS08635	0.24	-1.7
1,666,646	+		ABIE40_RS08635	0.24	-0.6
1,666,646	+		ABIE40_RS08635	0.24	-1.8
1,666,646	+		ABIE40_RS08635	0.24	-1.9
1,666,646	+		ABIE40_RS08635	0.24	-3.0
1,666,646	+		ABIE40_RS08635	0.24	-1.7
1,666,647	-		ABIE40_RS08635	0.24	-2.4
1,666,733	+		ABIE40_RS08635	0.28	-2.1
1,666,733	+		ABIE40_RS08635	0.28	-0.7
1,666,734	-		ABIE40_RS08635	0.28	-2.1
1,666,748	+		ABIE40_RS08635	0.29	-4.0
1,666,748	+		ABIE40_RS08635	0.29	-0.7
1,666,749	-		ABIE40_RS08635	0.29	-4.0
1,666,749	-		ABIE40_RS08635	0.29	-3.6
1,666,749	-		ABIE40_RS08635	0.29	-3.1
1,666,814	+		ABIE40_RS08635	0.33	-0.7
1,666,814	+		ABIE40_RS08635	0.33	-1.9
1,666,814	+		ABIE40_RS08635	0.33	-1.5
1,666,830	+		ABIE40_RS08635	0.33	-4.6
1,666,831	-		ABIE40_RS08635	0.34	-1.8
1,666,831	-		ABIE40_RS08635	0.34	-2.6
1,666,997	+		ABIE40_RS08635	0.42	+1.3
1,666,997	+		ABIE40_RS08635	0.42	-1.3
1,666,998	-		ABIE40_RS08635	0.42	-2.3
1,667,075	+		ABIE40_RS08635	0.47	-2.2
1,667,076	-		ABIE40_RS08635	0.47	-1.1
1,667,139	+		ABIE40_RS08635	0.50	-1.9
1,667,140	-		ABIE40_RS08635	0.50	-1.0
1,667,198	+		ABIE40_RS08635	0.53	-1.7
1,667,198	+		ABIE40_RS08635	0.53	+0.7
1,667,199	-		ABIE40_RS08635	0.53	-1.2
1,667,267	+		ABIE40_RS08635	0.57	-2.1
1,667,268	-		ABIE40_RS08635	0.57	-2.9
1,667,268	-		ABIE40_RS08635	0.57	+1.3
1,667,459	+		ABIE40_RS08635	0.67	-2.1
1,667,522	+		ABIE40_RS08635	0.70	-1.1
1,667,522	+		ABIE40_RS08635	0.70	-4.2
1,667,522	+		ABIE40_RS08635	0.70	-1.9
1,667,522	+		ABIE40_RS08635	0.70	+0.4
1,667,522	+		ABIE40_RS08635	0.70	-1.3
1,667,523	-		ABIE40_RS08635	0.70	-1.1
1,667,523	-		ABIE40_RS08635	0.70	-0.3
1,667,523	-		ABIE40_RS08635	0.70	-2.4
1,667,523	-		ABIE40_RS08635	0.70	-1.1
1,667,523	-		ABIE40_RS08635	0.70	-1.1
1,667,606	+		ABIE40_RS08635	0.75	-3.6
1,667,606	+		ABIE40_RS08635	0.75	-2.5
1,667,606	+		ABIE40_RS08635	0.75	-2.5
1,667,607	-		ABIE40_RS08635	0.75	-0.5
1,667,741	+		ABIE40_RS08635	0.82	-2.3
1,667,742	-		ABIE40_RS08635	0.82	-4.4
1,667,799	-		ABIE40_RS08635	0.85	-3.0
1,667,964	+				-4.1
1,667,964	+				-1.2
1,667,964	+				-1.5
1,667,964	+				-1.5
1,667,964	+				-1.7
1,667,965	-				+0.1
1,667,965	-				+1.3
1,667,966	+				-3.2
1,667,966	+				-3.0
1,667,966	+				-2.4
1,667,966	+				-2.6
1,667,966	+				-2.0
1,667,966	+				-1.0
1,667,967	-				+1.6
1,667,967	-				+1.1
1,667,967	-				+0.4
1,667,967	-				+1.4
1,667,985	+				-1.5
1,668,074	+				-0.2
1,668,074	+				+2.7
1,668,074	+				-1.8
1,668,075	-				-0.3
1,668,075	-				-0.6
1,668,123	+				-1.4
1,668,123	+				-0.0
1,668,124	-				-1.0
1,668,148	+				+0.3
1,668,236	+		ABIE40_RS08640	0.12	+0.3
1,668,237	-		ABIE40_RS08640	0.12	-0.4
1,668,546	+		ABIE40_RS08640	0.86	-0.1
1,668,600	+				+0.7
1,668,600	+				+1.1
1,668,600	+				+1.1
1,668,601	-				+0.9
1,668,729	+				-0.3
1,668,730	-				-3.3
1,668,730	-				-3.4
1,668,755	+				+0.6
1,668,862	+				-2.4
1,668,862	+				-0.0
1,668,862	+				-1.4
1,668,862	+				-2.4
1,668,862	+				-1.4
1,668,863	-				-2.4
1,669,015	+		ABIE40_RS08645	0.16	-1.6
1,669,015	+		ABIE40_RS08645	0.16	-0.5
1,669,063	+		ABIE40_RS08645	0.19	-1.7
1,669,066	+		ABIE40_RS08645	0.20	-2.0
1,669,066	+		ABIE40_RS08645	0.20	-2.2
1,669,066	+		ABIE40_RS08645	0.20	-2.7
1,669,066	+		ABIE40_RS08645	0.20	-0.7
1,669,067	-		ABIE40_RS08645	0.20	-1.3