Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS05040 and ABIE40_RS05045 are separated by 324 nucleotides ABIE40_RS05045 and ABIE40_RS05050 overlap by 8 nucleotides ABIE40_RS05050 and ABIE40_RS05055 are separated by 41 nucleotides
ABIE40_RS05040: ABIE40_RS05040 - SDR family oxidoreductase, at 985,111 to 985,863
_RS05040
ABIE40_RS05045: ABIE40_RS05045 - helix-turn-helix domain-containing protein, at 986,188 to 986,628
_RS05045
ABIE40_RS05050: ABIE40_RS05050 - DUF6456 domain-containing protein, at 986,621 to 987,433
_RS05050
ABIE40_RS05055: ABIE40_RS05055 - ornithine cyclodeaminase family protein, at 987,475 to 988,425
_RS05055
Position (kb) 986
987
988 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 985.691 kb on - strand, within ABIE40_RS05040 at 985.861 kb on + strand at 985.861 kb on + strand at 985.861 kb on + strand at 985.861 kb on + strand at 985.861 kb on + strand at 985.861 kb on + strand at 985.862 kb on - strand at 985.862 kb on - strand at 985.862 kb on - strand at 985.862 kb on - strand at 985.862 kb on - strand at 985.908 kb on - strand at 986.026 kb on + strand at 986.027 kb on - strand at 986.147 kb on + strand at 986.431 kb on + strand, within ABIE40_RS05045 at 986.431 kb on + strand, within ABIE40_RS05045 at 986.431 kb on + strand, within ABIE40_RS05045 at 986.431 kb on + strand, within ABIE40_RS05045 at 986.431 kb on + strand, within ABIE40_RS05045 at 986.431 kb on + strand, within ABIE40_RS05045 at 986.431 kb on + strand, within ABIE40_RS05045 at 986.431 kb on + strand, within ABIE40_RS05045 at 986.431 kb on + strand, within ABIE40_RS05045 at 986.431 kb on + strand, within ABIE40_RS05045 at 986.431 kb on + strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.432 kb on - strand, within ABIE40_RS05045 at 986.837 kb on + strand, within ABIE40_RS05050 at 986.838 kb on - strand, within ABIE40_RS05050 at 986.937 kb on + strand, within ABIE40_RS05050 at 987.232 kb on + strand, within ABIE40_RS05050 at 987.232 kb on + strand, within ABIE40_RS05050 at 987.341 kb on + strand, within ABIE40_RS05050 at 987.341 kb on + strand, within ABIE40_RS05050 at 987.341 kb on + strand, within ABIE40_RS05050 at 987.342 kb on - strand, within ABIE40_RS05050 at 987.342 kb on - strand, within ABIE40_RS05050 at 987.342 kb on - strand, within ABIE40_RS05050 at 987.342 kb on - strand, within ABIE40_RS05050 at 987.344 kb on - strand, within ABIE40_RS05050 at 987.344 kb on - strand, within ABIE40_RS05050 at 987.344 kb on - strand, within ABIE40_RS05050 at 987.392 kb on + strand at 987.393 kb on - strand at 987.431 kb on + strand at 987.431 kb on + strand at 987.431 kb on + strand at 987.432 kb on - strand at 987.432 kb on - strand at 987.432 kb on - strand at 987.432 kb on - strand at 988.059 kb on + strand, within ABIE40_RS05055 at 988.059 kb on + strand, within ABIE40_RS05055 at 988.060 kb on - strand, within ABIE40_RS05055 at 988.213 kb on + strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.214 kb on - strand, within ABIE40_RS05055 at 988.419 kb on + strand at 988.420 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 985,691 - ABIE40_RS05040 0.77 -0.1 985,861 + -0.5 985,861 + +0.1 985,861 + -2.8 985,861 + +0.2 985,861 + +1.1 985,861 + +0.1 985,862 - -0.7 985,862 - -0.2 985,862 - -0.7 985,862 - +1.0 985,862 - +0.0 985,908 - -0.9 986,026 + -1.4 986,027 - -4.0 986,147 + +0.4 986,431 + ABIE40_RS05045 0.55 +0.5 986,431 + ABIE40_RS05045 0.55 -0.6 986,431 + ABIE40_RS05045 0.55 +1.5 986,431 + ABIE40_RS05045 0.55 -1.5 986,431 + ABIE40_RS05045 0.55 -0.7 986,431 + ABIE40_RS05045 0.55 +0.8 986,431 + ABIE40_RS05045 0.55 -1.0 986,431 + ABIE40_RS05045 0.55 +0.0 986,431 + ABIE40_RS05045 0.55 +1.8 986,431 + ABIE40_RS05045 0.55 -2.2 986,431 + ABIE40_RS05045 0.55 -0.2 986,432 - ABIE40_RS05045 0.55 -0.2 986,432 - ABIE40_RS05045 0.55 -0.2 986,432 - ABIE40_RS05045 0.55 -2.1 986,432 - ABIE40_RS05045 0.55 +1.4 986,432 - ABIE40_RS05045 0.55 -1.5 986,432 - ABIE40_RS05045 0.55 -1.8 986,432 - ABIE40_RS05045 0.55 +1.3 986,432 - ABIE40_RS05045 0.55 +0.0 986,432 - ABIE40_RS05045 0.55 +1.3 986,432 - ABIE40_RS05045 0.55 -0.8 986,432 - ABIE40_RS05045 0.55 +3.4 986,432 - ABIE40_RS05045 0.55 -2.0 986,432 - ABIE40_RS05045 0.55 -0.8 986,432 - ABIE40_RS05045 0.55 -0.6 986,432 - ABIE40_RS05045 0.55 +0.5 986,837 + ABIE40_RS05050 0.27 -0.5 986,838 - ABIE40_RS05050 0.27 -1.3 986,937 + ABIE40_RS05050 0.39 -1.7 987,232 + ABIE40_RS05050 0.75 -0.1 987,232 + ABIE40_RS05050 0.75 -1.4 987,341 + ABIE40_RS05050 0.89 -0.7 987,341 + ABIE40_RS05050 0.89 +1.1 987,341 + ABIE40_RS05050 0.89 -1.4 987,342 - ABIE40_RS05050 0.89 -1.2 987,342 - ABIE40_RS05050 0.89 +0.7 987,342 - ABIE40_RS05050 0.89 -1.5 987,342 - ABIE40_RS05050 0.89 -0.1 987,344 - ABIE40_RS05050 0.89 -0.5 987,344 - ABIE40_RS05050 0.89 -0.4 987,344 - ABIE40_RS05050 0.89 +1.8 987,392 + -1.1 987,393 - -0.5 987,431 + -1.0 987,431 + -1.1 987,431 + -0.3 987,432 - +1.8 987,432 - +0.3 987,432 - -0.9 987,432 - -0.4 988,059 + ABIE40_RS05055 0.61 +0.2 988,059 + ABIE40_RS05055 0.61 -1.1 988,060 - ABIE40_RS05055 0.62 -0.8 988,213 + ABIE40_RS05055 0.78 +0.2 988,214 - ABIE40_RS05055 0.78 +1.3 988,214 - ABIE40_RS05055 0.78 +0.7 988,214 - ABIE40_RS05055 0.78 -1.2 988,214 - ABIE40_RS05055 0.78 +0.7 988,214 - ABIE40_RS05055 0.78 +0.2 988,214 - ABIE40_RS05055 0.78 -1.9 988,214 - ABIE40_RS05055 0.78 +1.8 988,214 - ABIE40_RS05055 0.78 -0.2 988,214 - ABIE40_RS05055 0.78 -0.9 988,419 + +0.5 988,420 - +0.5
Or see this region's nucleotide sequence