Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04870 and ABIE40_RS04875 are separated by 35 nucleotides ABIE40_RS04875 and ABIE40_RS04880 are separated by 281 nucleotides ABIE40_RS04880 and ABIE40_RS04885 are separated by 18 nucleotides ABIE40_RS04885 and ABIE40_RS04890 are separated by 139 nucleotides
ABIE40_RS04870: ABIE40_RS04870 - potassium channel family protein, at 954,677 to 955,135
_RS04870
ABIE40_RS04875: ABIE40_RS04875 - universal stress protein, at 955,171 to 955,581
_RS04875
ABIE40_RS04880: ABIE40_RS04880 - VOC family protein, at 955,863 to 956,723
_RS04880
ABIE40_RS04885: ABIE40_RS04885 - HIT family protein, at 956,742 to 957,230
_RS04885
ABIE40_RS04890: ABIE40_RS04890 - DUF2277 domain-containing protein, at 957,370 to 957,636
_RS04890
Position (kb) 955
956
957 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 954.908 kb on + strand, within ABIE40_RS04870 at 954.908 kb on + strand, within ABIE40_RS04870 at 954.908 kb on + strand, within ABIE40_RS04870 at 954.908 kb on + strand, within ABIE40_RS04870 at 954.908 kb on + strand, within ABIE40_RS04870 at 954.909 kb on - strand, within ABIE40_RS04870 at 954.909 kb on - strand, within ABIE40_RS04870 at 954.909 kb on - strand, within ABIE40_RS04870 at 954.909 kb on - strand, within ABIE40_RS04870 at 954.909 kb on - strand, within ABIE40_RS04870 at 954.909 kb on - strand, within ABIE40_RS04870 at 954.909 kb on - strand, within ABIE40_RS04870 at 954.909 kb on - strand, within ABIE40_RS04870 at 954.909 kb on - strand, within ABIE40_RS04870 at 954.911 kb on + strand, within ABIE40_RS04870 at 954.911 kb on + strand, within ABIE40_RS04870 at 954.912 kb on - strand, within ABIE40_RS04870 at 954.950 kb on + strand, within ABIE40_RS04870 at 954.950 kb on + strand, within ABIE40_RS04870 at 954.950 kb on + strand, within ABIE40_RS04870 at 954.950 kb on + strand, within ABIE40_RS04870 at 954.951 kb on - strand, within ABIE40_RS04870 at 954.951 kb on - strand, within ABIE40_RS04870 at 954.951 kb on - strand, within ABIE40_RS04870 at 954.951 kb on - strand, within ABIE40_RS04870 at 954.951 kb on - strand, within ABIE40_RS04870 at 954.951 kb on - strand, within ABIE40_RS04870 at 955.101 kb on - strand at 955.101 kb on - strand at 955.172 kb on + strand at 955.172 kb on + strand at 955.172 kb on + strand at 955.172 kb on + strand at 955.172 kb on + strand at 955.172 kb on + strand at 955.173 kb on - strand at 955.173 kb on - strand at 955.173 kb on - strand at 955.173 kb on - strand at 955.173 kb on - strand at 955.173 kb on - strand at 955.173 kb on - strand at 955.176 kb on + strand at 955.176 kb on + strand at 955.177 kb on - strand at 955.177 kb on - strand at 955.177 kb on - strand at 955.177 kb on - strand at 955.177 kb on - strand at 955.177 kb on - strand at 955.177 kb on - strand at 955.238 kb on + strand, within ABIE40_RS04875 at 955.238 kb on + strand, within ABIE40_RS04875 at 955.238 kb on + strand, within ABIE40_RS04875 at 955.238 kb on + strand, within ABIE40_RS04875 at 955.239 kb on - strand, within ABIE40_RS04875 at 955.239 kb on - strand, within ABIE40_RS04875 at 955.239 kb on - strand, within ABIE40_RS04875 at 955.239 kb on - strand, within ABIE40_RS04875 at 955.239 kb on - strand, within ABIE40_RS04875 at 955.239 kb on - strand, within ABIE40_RS04875 at 955.239 kb on - strand, within ABIE40_RS04875 at 955.239 kb on - strand, within ABIE40_RS04875 at 955.258 kb on - strand, within ABIE40_RS04875 at 955.258 kb on - strand, within ABIE40_RS04875 at 955.445 kb on + strand, within ABIE40_RS04875 at 955.445 kb on + strand, within ABIE40_RS04875 at 955.445 kb on + strand, within ABIE40_RS04875 at 955.445 kb on + strand, within ABIE40_RS04875 at 955.445 kb on + strand, within ABIE40_RS04875 at 955.445 kb on + strand, within ABIE40_RS04875 at 955.446 kb on - strand, within ABIE40_RS04875 at 955.446 kb on - strand, within ABIE40_RS04875 at 955.446 kb on - strand, within ABIE40_RS04875 at 955.446 kb on - strand, within ABIE40_RS04875 at 955.446 kb on - strand, within ABIE40_RS04875 at 955.577 kb on + strand at 955.577 kb on + strand at 955.577 kb on + strand at 955.577 kb on + strand at 955.578 kb on - strand at 955.594 kb on + strand at 955.594 kb on + strand at 955.613 kb on - strand at 955.622 kb on + strand at 955.622 kb on + strand at 955.622 kb on + strand at 955.623 kb on - strand at 955.623 kb on - strand at 955.626 kb on + strand at 955.626 kb on + strand at 955.626 kb on + strand at 955.626 kb on + strand at 955.626 kb on + strand at 955.626 kb on + strand at 955.627 kb on - strand at 955.627 kb on - strand at 955.627 kb on - strand at 955.627 kb on - strand at 955.627 kb on - strand at 955.627 kb on - strand at 955.640 kb on - strand at 955.730 kb on + strand at 955.731 kb on - strand at 955.731 kb on - strand at 955.732 kb on + strand at 955.732 kb on + strand at 955.732 kb on + strand at 955.732 kb on + strand at 955.732 kb on + strand at 955.732 kb on + strand at 955.732 kb on + strand at 955.732 kb on + strand at 955.733 kb on - strand at 955.733 kb on - strand at 955.733 kb on - strand at 955.733 kb on - strand at 955.733 kb on - strand at 955.733 kb on - strand at 955.733 kb on - strand at 955.733 kb on - strand at 955.733 kb on - strand at 955.743 kb on + strand at 955.743 kb on + strand at 955.743 kb on + strand at 955.743 kb on + strand at 955.830 kb on - strand at 955.830 kb on - strand at 955.882 kb on - strand at 955.956 kb on + strand, within ABIE40_RS04880 at 955.956 kb on + strand, within ABIE40_RS04880 at 955.956 kb on + strand, within ABIE40_RS04880 at 955.956 kb on + strand, within ABIE40_RS04880 at 955.957 kb on - strand, within ABIE40_RS04880 at 955.957 kb on - strand, within ABIE40_RS04880 at 955.957 kb on - strand, within ABIE40_RS04880 at 955.957 kb on - strand, within ABIE40_RS04880 at 956.051 kb on + strand, within ABIE40_RS04880 at 956.052 kb on - strand, within ABIE40_RS04880 at 956.156 kb on + strand, within ABIE40_RS04880 at 956.156 kb on + strand, within ABIE40_RS04880 at 956.156 kb on + strand, within ABIE40_RS04880 at 956.157 kb on - strand, within ABIE40_RS04880 at 956.158 kb on + strand, within ABIE40_RS04880 at 956.209 kb on - strand, within ABIE40_RS04880 at 956.209 kb on - strand, within ABIE40_RS04880 at 956.244 kb on + strand, within ABIE40_RS04880 at 956.244 kb on + strand, within ABIE40_RS04880 at 956.244 kb on + strand, within ABIE40_RS04880 at 956.331 kb on + strand, within ABIE40_RS04880 at 956.332 kb on - strand, within ABIE40_RS04880 at 956.332 kb on - strand, within ABIE40_RS04880 at 956.413 kb on + strand, within ABIE40_RS04880 at 956.414 kb on - strand, within ABIE40_RS04880 at 956.414 kb on - strand, within ABIE40_RS04880 at 956.414 kb on - strand, within ABIE40_RS04880 at 956.414 kb on - strand, within ABIE40_RS04880 at 956.414 kb on - strand, within ABIE40_RS04880 at 956.414 kb on - strand, within ABIE40_RS04880 at 956.583 kb on + strand, within ABIE40_RS04880 at 956.768 kb on + strand at 956.768 kb on + strand at 956.768 kb on + strand at 956.768 kb on + strand at 956.769 kb on - strand at 956.769 kb on - strand at 956.769 kb on - strand at 956.769 kb on - strand at 956.931 kb on + strand, within ABIE40_RS04885 at 956.931 kb on + strand, within ABIE40_RS04885 at 956.932 kb on - strand, within ABIE40_RS04885 at 956.932 kb on - strand, within ABIE40_RS04885 at 956.932 kb on - strand, within ABIE40_RS04885 at 956.932 kb on - strand, within ABIE40_RS04885 at 956.950 kb on + strand, within ABIE40_RS04885 at 956.950 kb on + strand, within ABIE40_RS04885 at 956.950 kb on + strand, within ABIE40_RS04885 at 956.950 kb on + strand, within ABIE40_RS04885 at 956.950 kb on + strand, within ABIE40_RS04885 at 956.950 kb on + strand, within ABIE40_RS04885 at 956.951 kb on - strand, within ABIE40_RS04885 at 956.951 kb on - strand, within ABIE40_RS04885 at 956.951 kb on - strand, within ABIE40_RS04885 at 956.951 kb on - strand, within ABIE40_RS04885 at 957.008 kb on + strand, within ABIE40_RS04885 at 957.010 kb on + strand, within ABIE40_RS04885 at 957.010 kb on + strand, within ABIE40_RS04885 at 957.010 kb on + strand, within ABIE40_RS04885 at 957.010 kb on + strand, within ABIE40_RS04885 at 957.010 kb on + strand, within ABIE40_RS04885 at 957.010 kb on + strand, within ABIE40_RS04885 at 957.010 kb on + strand, within ABIE40_RS04885 at 957.010 kb on + strand, within ABIE40_RS04885 at 957.011 kb on - strand, within ABIE40_RS04885 at 957.011 kb on - strand, within ABIE40_RS04885 at 957.011 kb on - strand, within ABIE40_RS04885 at 957.011 kb on - strand, within ABIE40_RS04885 at 957.096 kb on + strand, within ABIE40_RS04885 at 957.142 kb on + strand, within ABIE40_RS04885 at 957.205 kb on + strand at 957.205 kb on + strand at 957.205 kb on + strand at 957.205 kb on + strand at 957.206 kb on - strand at 957.206 kb on - strand at 957.206 kb on - strand at 957.206 kb on - strand at 957.206 kb on - strand at 957.206 kb on - strand at 957.206 kb on - strand at 957.206 kb on - strand at 957.206 kb on - strand at 957.241 kb on - strand at 957.241 kb on - strand at 957.306 kb on + strand at 957.307 kb on - strand at 957.312 kb on + strand at 957.313 kb on - strand at 957.313 kb on - strand at 957.313 kb on - strand at 957.313 kb on - strand at 957.382 kb on - strand at 957.687 kb on + strand at 957.687 kb on + strand at 957.687 kb on + strand at 957.688 kb on - strand at 957.688 kb on - strand at 957.688 kb on - strand at 957.688 kb on - strand at 957.688 kb on - strand at 957.709 kb on - strand at 957.709 kb on - strand at 957.720 kb on - strand at 957.720 kb on - strand at 957.720 kb on - strand at 957.720 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 954,908 + ABIE40_RS04870 0.50 -2.0 954,908 + ABIE40_RS04870 0.50 -0.8 954,908 + ABIE40_RS04870 0.50 -0.8 954,908 + ABIE40_RS04870 0.50 +0.4 954,908 + ABIE40_RS04870 0.50 -0.4 954,909 - ABIE40_RS04870 0.51 +2.8 954,909 - ABIE40_RS04870 0.51 -1.5 954,909 - ABIE40_RS04870 0.51 +0.2 954,909 - ABIE40_RS04870 0.51 -1.2 954,909 - ABIE40_RS04870 0.51 +0.0 954,909 - ABIE40_RS04870 0.51 -1.2 954,909 - ABIE40_RS04870 0.51 -0.4 954,909 - ABIE40_RS04870 0.51 +2.1 954,909 - ABIE40_RS04870 0.51 -0.3 954,911 + ABIE40_RS04870 0.51 -1.7 954,911 + ABIE40_RS04870 0.51 -1.7 954,912 - ABIE40_RS04870 0.51 -1.2 954,950 + ABIE40_RS04870 0.59 +2.1 954,950 + ABIE40_RS04870 0.59 -1.3 954,950 + ABIE40_RS04870 0.59 -1.0 954,950 + ABIE40_RS04870 0.59 -0.6 954,951 - ABIE40_RS04870 0.60 -2.3 954,951 - ABIE40_RS04870 0.60 +0.2 954,951 - ABIE40_RS04870 0.60 -1.5 954,951 - ABIE40_RS04870 0.60 -1.0 954,951 - ABIE40_RS04870 0.60 -1.0 954,951 - ABIE40_RS04870 0.60 -0.9 955,101 - -2.3 955,101 - +2.2 955,172 + -3.2 955,172 + -1.6 955,172 + -1.2 955,172 + +0.3 955,172 + -0.2 955,172 + +0.7 955,173 - -0.6 955,173 - -0.8 955,173 - -0.6 955,173 - +0.7 955,173 - -1.9 955,173 - -0.9 955,173 - +1.8 955,176 + -0.8 955,176 + +0.1 955,177 - +0.5 955,177 - -1.2 955,177 - +0.2 955,177 - -0.3 955,177 - +0.2 955,177 - +0.3 955,177 - -0.3 955,238 + ABIE40_RS04875 0.16 +0.7 955,238 + ABIE40_RS04875 0.16 -4.0 955,238 + ABIE40_RS04875 0.16 +1.4 955,238 + ABIE40_RS04875 0.16 -0.8 955,239 - ABIE40_RS04875 0.17 -0.7 955,239 - ABIE40_RS04875 0.17 -0.6 955,239 - ABIE40_RS04875 0.17 -0.2 955,239 - ABIE40_RS04875 0.17 -0.5 955,239 - ABIE40_RS04875 0.17 +0.6 955,239 - ABIE40_RS04875 0.17 +0.4 955,239 - ABIE40_RS04875 0.17 -0.1 955,239 - ABIE40_RS04875 0.17 -1.6 955,258 - ABIE40_RS04875 0.21 +0.0 955,258 - ABIE40_RS04875 0.21 +0.7 955,445 + ABIE40_RS04875 0.67 -1.1 955,445 + ABIE40_RS04875 0.67 -1.5 955,445 + ABIE40_RS04875 0.67 -0.7 955,445 + ABIE40_RS04875 0.67 +1.3 955,445 + ABIE40_RS04875 0.67 -1.8 955,445 + ABIE40_RS04875 0.67 -0.2 955,446 - ABIE40_RS04875 0.67 -0.1 955,446 - ABIE40_RS04875 0.67 +0.1 955,446 - ABIE40_RS04875 0.67 +0.2 955,446 - ABIE40_RS04875 0.67 -2.0 955,446 - ABIE40_RS04875 0.67 -1.3 955,577 + +1.1 955,577 + +0.6 955,577 + +0.4 955,577 + -0.1 955,578 - -0.4 955,594 + -1.9 955,594 + -1.1 955,613 - -1.0 955,622 + -0.9 955,622 + +0.3 955,622 + +1.7 955,623 - -1.0 955,623 - -0.6 955,626 + +1.1 955,626 + +0.1 955,626 + -0.6 955,626 + -0.1 955,626 + -1.0 955,626 + -0.2 955,627 - -0.9 955,627 - -0.1 955,627 - -0.4 955,627 - -1.3 955,627 - +3.4 955,627 - -0.2 955,640 - -0.6 955,730 + +0.4 955,731 - -0.8 955,731 - +0.2 955,732 + -0.3 955,732 + -0.2 955,732 + +0.8 955,732 + -3.2 955,732 + -1.8 955,732 + -0.5 955,732 + -0.2 955,732 + -0.6 955,733 - +0.3 955,733 - -1.5 955,733 - +0.5 955,733 - -1.5 955,733 - -0.1 955,733 - -0.6 955,733 - +2.4 955,733 - +0.5 955,733 - -0.8 955,743 + -1.3 955,743 + -0.5 955,743 + +0.2 955,743 + -0.0 955,830 - +1.2 955,830 - +0.2 955,882 - +2.5 955,956 + ABIE40_RS04880 0.11 +0.7 955,956 + ABIE40_RS04880 0.11 -0.9 955,956 + ABIE40_RS04880 0.11 -1.7 955,956 + ABIE40_RS04880 0.11 -2.0 955,957 - ABIE40_RS04880 0.11 -0.0 955,957 - ABIE40_RS04880 0.11 +0.7 955,957 - ABIE40_RS04880 0.11 +1.6 955,957 - ABIE40_RS04880 0.11 -1.0 956,051 + ABIE40_RS04880 0.22 -1.1 956,052 - ABIE40_RS04880 0.22 -0.5 956,156 + ABIE40_RS04880 0.34 -0.4 956,156 + ABIE40_RS04880 0.34 +0.8 956,156 + ABIE40_RS04880 0.34 -0.4 956,157 - ABIE40_RS04880 0.34 +0.7 956,158 + ABIE40_RS04880 0.34 +1.2 956,209 - ABIE40_RS04880 0.40 -3.1 956,209 - ABIE40_RS04880 0.40 +0.3 956,244 + ABIE40_RS04880 0.44 -0.2 956,244 + ABIE40_RS04880 0.44 -2.4 956,244 + ABIE40_RS04880 0.44 -3.1 956,331 + ABIE40_RS04880 0.54 +2.1 956,332 - ABIE40_RS04880 0.54 +0.4 956,332 - ABIE40_RS04880 0.54 -0.2 956,413 + ABIE40_RS04880 0.64 -1.6 956,414 - ABIE40_RS04880 0.64 -1.8 956,414 - ABIE40_RS04880 0.64 -0.6 956,414 - ABIE40_RS04880 0.64 -1.0 956,414 - ABIE40_RS04880 0.64 +0.4 956,414 - ABIE40_RS04880 0.64 -2.5 956,414 - ABIE40_RS04880 0.64 +1.8 956,583 + ABIE40_RS04880 0.84 -0.8 956,768 + -1.3 956,768 + -1.0 956,768 + +0.6 956,768 + -1.0 956,769 - +0.3 956,769 - +0.5 956,769 - -0.5 956,769 - -2.0 956,931 + ABIE40_RS04885 0.39 +0.2 956,931 + ABIE40_RS04885 0.39 -0.0 956,932 - ABIE40_RS04885 0.39 +4.1 956,932 - ABIE40_RS04885 0.39 -0.6 956,932 - ABIE40_RS04885 0.39 -0.3 956,932 - ABIE40_RS04885 0.39 +0.2 956,950 + ABIE40_RS04885 0.43 +0.5 956,950 + ABIE40_RS04885 0.43 -1.6 956,950 + ABIE40_RS04885 0.43 +2.2 956,950 + ABIE40_RS04885 0.43 +1.7 956,950 + ABIE40_RS04885 0.43 -1.0 956,950 + ABIE40_RS04885 0.43 -1.8 956,951 - ABIE40_RS04885 0.43 +0.8 956,951 - ABIE40_RS04885 0.43 -0.8 956,951 - ABIE40_RS04885 0.43 +0.8 956,951 - ABIE40_RS04885 0.43 +0.2 957,008 + ABIE40_RS04885 0.54 -3.3 957,010 + ABIE40_RS04885 0.55 +0.9 957,010 + ABIE40_RS04885 0.55 +0.1 957,010 + ABIE40_RS04885 0.55 -2.1 957,010 + ABIE40_RS04885 0.55 +0.3 957,010 + ABIE40_RS04885 0.55 -1.2 957,010 + ABIE40_RS04885 0.55 +0.6 957,010 + ABIE40_RS04885 0.55 -0.5 957,010 + ABIE40_RS04885 0.55 -1.3 957,011 - ABIE40_RS04885 0.55 -1.6 957,011 - ABIE40_RS04885 0.55 +0.4 957,011 - ABIE40_RS04885 0.55 +0.2 957,011 - ABIE40_RS04885 0.55 -2.0 957,096 + ABIE40_RS04885 0.72 -1.8 957,142 + ABIE40_RS04885 0.82 +0.1 957,205 + -0.3 957,205 + +0.9 957,205 + -0.3 957,205 + -0.1 957,206 - -0.8 957,206 - -2.3 957,206 - -1.6 957,206 - +1.1 957,206 - +0.0 957,206 - -0.4 957,206 - -2.7 957,206 - +0.2 957,206 - +0.2 957,241 - -0.2 957,241 - +2.9 957,306 + -0.7 957,307 - +1.2 957,312 + -2.3 957,313 - -1.7 957,313 - +0.2 957,313 - -0.3 957,313 - +1.0 957,382 - -0.8 957,687 + -0.1 957,687 + -0.6 957,687 + -0.6 957,688 - -1.0 957,688 - -0.4 957,688 - +1.5 957,688 - -0.8 957,688 - +0.0 957,709 - +0.2 957,709 - -2.5 957,720 - +0.1 957,720 - -0.5 957,720 - -0.3 957,720 - +0.1
Or see this region's nucleotide sequence