Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03510 and ABIE40_RS03515 are separated by 71 nucleotides ABIE40_RS03515 and ABIE40_RS03520 are separated by 151 nucleotides ABIE40_RS03520 and ABIE40_RS03525 are separated by 14 nucleotides
ABIE40_RS03510: ABIE40_RS03510 - DUF937 domain-containing protein, at 696,226 to 697,089
_RS03510
ABIE40_RS03515: ABIE40_RS03515 - glutamate--cysteine ligase, at 697,161 to 698,534
_RS03515
ABIE40_RS03520: ABIE40_RS03520 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 698,686 to 699,423
_RS03520
ABIE40_RS03525: ABIE40_RS03525 - inorganic phosphate transporter, at 699,438 to 700,937
_RS03525
Position (kb) 697
698
699 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 696.167 kb on - strand at 696.174 kb on - strand at 696.187 kb on - strand at 696.296 kb on + strand at 696.350 kb on + strand, within ABIE40_RS03510 at 696.350 kb on + strand, within ABIE40_RS03510 at 696.351 kb on - strand, within ABIE40_RS03510 at 696.351 kb on - strand, within ABIE40_RS03510 at 696.734 kb on + strand, within ABIE40_RS03510 at 696.734 kb on + strand, within ABIE40_RS03510 at 696.822 kb on + strand, within ABIE40_RS03510 at 696.822 kb on + strand, within ABIE40_RS03510 at 696.823 kb on - strand, within ABIE40_RS03510 at 696.823 kb on - strand, within ABIE40_RS03510 at 696.823 kb on - strand, within ABIE40_RS03510 at 696.868 kb on - strand, within ABIE40_RS03510 at 696.868 kb on - strand, within ABIE40_RS03510 at 696.878 kb on + strand, within ABIE40_RS03510 at 696.878 kb on + strand, within ABIE40_RS03510 at 696.878 kb on + strand, within ABIE40_RS03510 at 696.879 kb on - strand, within ABIE40_RS03510 at 696.888 kb on - strand, within ABIE40_RS03510 at 696.888 kb on - strand, within ABIE40_RS03510 at 696.929 kb on + strand, within ABIE40_RS03510 at 696.929 kb on + strand, within ABIE40_RS03510 at 696.929 kb on + strand, within ABIE40_RS03510 at 696.930 kb on - strand, within ABIE40_RS03510 at 696.930 kb on - strand, within ABIE40_RS03510 at 697.109 kb on + strand at 697.109 kb on + strand at 697.109 kb on + strand at 697.110 kb on - strand at 697.129 kb on + strand at 697.129 kb on + strand at 697.129 kb on + strand at 697.129 kb on + strand at 697.129 kb on + strand at 697.130 kb on - strand at 697.130 kb on - strand at 697.131 kb on + strand at 697.162 kb on + strand at 697.162 kb on + strand at 697.163 kb on - strand at 697.166 kb on - strand at 697.171 kb on + strand at 697.171 kb on + strand at 697.172 kb on - strand at 697.172 kb on - strand at 697.172 kb on - strand at 697.498 kb on + strand, within ABIE40_RS03515 at 697.499 kb on - strand, within ABIE40_RS03515 at 697.703 kb on + strand, within ABIE40_RS03515 at 697.703 kb on + strand, within ABIE40_RS03515 at 697.738 kb on + strand, within ABIE40_RS03515 at 697.738 kb on + strand, within ABIE40_RS03515 at 697.738 kb on + strand, within ABIE40_RS03515 at 697.738 kb on + strand, within ABIE40_RS03515 at 697.739 kb on - strand, within ABIE40_RS03515 at 698.008 kb on + strand, within ABIE40_RS03515 at 698.009 kb on - strand, within ABIE40_RS03515 at 698.048 kb on - strand, within ABIE40_RS03515 at 698.298 kb on - strand, within ABIE40_RS03515 at 698.298 kb on - strand, within ABIE40_RS03515 at 698.298 kb on - strand, within ABIE40_RS03515 at 698.380 kb on + strand, within ABIE40_RS03515 at 698.542 kb on + strand at 698.550 kb on - strand at 698.550 kb on - strand at 698.550 kb on - strand at 698.550 kb on - strand at 698.550 kb on - strand at 698.550 kb on - strand at 698.595 kb on + strand at 698.595 kb on + strand at 698.596 kb on - strand at 698.596 kb on - strand at 698.611 kb on + strand at 698.611 kb on + strand at 698.611 kb on + strand at 698.612 kb on - strand at 698.675 kb on + strand at 698.676 kb on - strand at 698.688 kb on - strand at 698.921 kb on + strand, within ABIE40_RS03520 at 698.921 kb on + strand, within ABIE40_RS03520 at 698.921 kb on + strand, within ABIE40_RS03520 at 698.921 kb on + strand, within ABIE40_RS03520 at 698.921 kb on + strand, within ABIE40_RS03520 at 698.922 kb on - strand, within ABIE40_RS03520 at 698.922 kb on - strand, within ABIE40_RS03520 at 698.922 kb on - strand, within ABIE40_RS03520 at 698.922 kb on - strand, within ABIE40_RS03520 at 698.922 kb on - strand, within ABIE40_RS03520 at 699.135 kb on - strand, within ABIE40_RS03520 at 699.135 kb on - strand, within ABIE40_RS03520 at 699.135 kb on - strand, within ABIE40_RS03520 at 699.170 kb on + strand, within ABIE40_RS03520 at 699.171 kb on - strand, within ABIE40_RS03520 at 699.171 kb on - strand, within ABIE40_RS03520 at 699.171 kb on - strand, within ABIE40_RS03520 at 699.312 kb on + strand, within ABIE40_RS03520 at 699.312 kb on + strand, within ABIE40_RS03520 at 699.313 kb on - strand, within ABIE40_RS03520 at 699.313 kb on - strand, within ABIE40_RS03520 at 699.313 kb on - strand, within ABIE40_RS03520 at 699.332 kb on + strand, within ABIE40_RS03520 at 699.332 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.336 kb on + strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.337 kb on - strand, within ABIE40_RS03520 at 699.338 kb on + strand, within ABIE40_RS03520 at 699.338 kb on + strand, within ABIE40_RS03520 at 699.338 kb on + strand, within ABIE40_RS03520 at 699.338 kb on + strand, within ABIE40_RS03520 at 699.339 kb on - strand, within ABIE40_RS03520 at 699.339 kb on - strand, within ABIE40_RS03520 at 699.339 kb on - strand, within ABIE40_RS03520 at 699.458 kb on + strand at 699.458 kb on + strand at 699.466 kb on + strand at 699.466 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 696,167 - +0.3 696,174 - +0.6 696,187 - +0.1 696,296 + -0.9 696,350 + ABIE40_RS03510 0.14 +0.3 696,350 + ABIE40_RS03510 0.14 -0.4 696,351 - ABIE40_RS03510 0.14 -1.8 696,351 - ABIE40_RS03510 0.14 -2.4 696,734 + ABIE40_RS03510 0.59 +1.9 696,734 + ABIE40_RS03510 0.59 -1.1 696,822 + ABIE40_RS03510 0.69 +1.1 696,822 + ABIE40_RS03510 0.69 +0.7 696,823 - ABIE40_RS03510 0.69 +0.9 696,823 - ABIE40_RS03510 0.69 +0.7 696,823 - ABIE40_RS03510 0.69 -0.9 696,868 - ABIE40_RS03510 0.74 -0.2 696,868 - ABIE40_RS03510 0.74 -1.1 696,878 + ABIE40_RS03510 0.75 -1.8 696,878 + ABIE40_RS03510 0.75 -1.8 696,878 + ABIE40_RS03510 0.75 +0.9 696,879 - ABIE40_RS03510 0.76 -0.3 696,888 - ABIE40_RS03510 0.77 -1.8 696,888 - ABIE40_RS03510 0.77 +0.2 696,929 + ABIE40_RS03510 0.81 +1.9 696,929 + ABIE40_RS03510 0.81 -0.2 696,929 + ABIE40_RS03510 0.81 -3.8 696,930 - ABIE40_RS03510 0.81 +1.2 696,930 - ABIE40_RS03510 0.81 -0.4 697,109 + -2.7 697,109 + +0.8 697,109 + -0.2 697,110 - -0.9 697,129 + +0.9 697,129 + +1.9 697,129 + +0.9 697,129 + -0.9 697,129 + +0.1 697,130 - -2.7 697,130 - +0.3 697,131 + -1.1 697,162 + +0.9 697,162 + -0.4 697,163 - +1.1 697,166 - +0.4 697,171 + +0.8 697,171 + -0.3 697,172 - -0.4 697,172 - +0.5 697,172 - -0.7 697,498 + ABIE40_RS03515 0.25 -0.7 697,499 - ABIE40_RS03515 0.25 +1.9 697,703 + ABIE40_RS03515 0.39 -1.3 697,703 + ABIE40_RS03515 0.39 -0.1 697,738 + ABIE40_RS03515 0.42 +0.9 697,738 + ABIE40_RS03515 0.42 -0.1 697,738 + ABIE40_RS03515 0.42 +4.5 697,738 + ABIE40_RS03515 0.42 +1.9 697,739 - ABIE40_RS03515 0.42 -0.9 698,008 + ABIE40_RS03515 0.62 -0.9 698,009 - ABIE40_RS03515 0.62 -1.1 698,048 - ABIE40_RS03515 0.65 +1.9 698,298 - ABIE40_RS03515 0.83 -1.3 698,298 - ABIE40_RS03515 0.83 -1.9 698,298 - ABIE40_RS03515 0.83 +1.9 698,380 + ABIE40_RS03515 0.89 -0.1 698,542 + +1.9 698,550 - +1.2 698,550 - +0.0 698,550 - -1.1 698,550 - -1.7 698,550 - -0.0 698,550 - +1.4 698,595 + -0.5 698,595 + -0.3 698,596 - -0.4 698,596 - +0.1 698,611 + -0.5 698,611 + +2.2 698,611 + -1.1 698,612 - +0.2 698,675 + -0.6 698,676 - -0.0 698,688 - -0.2 698,921 + ABIE40_RS03520 0.32 -0.2 698,921 + ABIE40_RS03520 0.32 -0.8 698,921 + ABIE40_RS03520 0.32 +0.9 698,921 + ABIE40_RS03520 0.32 +0.3 698,921 + ABIE40_RS03520 0.32 -0.6 698,922 - ABIE40_RS03520 0.32 +2.2 698,922 - ABIE40_RS03520 0.32 +1.3 698,922 - ABIE40_RS03520 0.32 -0.9 698,922 - ABIE40_RS03520 0.32 -0.2 698,922 - ABIE40_RS03520 0.32 +0.2 699,135 - ABIE40_RS03520 0.61 -0.4 699,135 - ABIE40_RS03520 0.61 +0.2 699,135 - ABIE40_RS03520 0.61 -0.4 699,170 + ABIE40_RS03520 0.66 -0.2 699,171 - ABIE40_RS03520 0.66 +0.7 699,171 - ABIE40_RS03520 0.66 +0.3 699,171 - ABIE40_RS03520 0.66 +0.5 699,312 + ABIE40_RS03520 0.85 +0.3 699,312 + ABIE40_RS03520 0.85 -0.5 699,313 - ABIE40_RS03520 0.85 +1.7 699,313 - ABIE40_RS03520 0.85 +1.9 699,313 - ABIE40_RS03520 0.85 +0.9 699,332 + ABIE40_RS03520 0.88 -0.1 699,332 + ABIE40_RS03520 0.88 +0.6 699,336 + ABIE40_RS03520 0.88 +0.6 699,336 + ABIE40_RS03520 0.88 -0.5 699,336 + ABIE40_RS03520 0.88 -0.1 699,336 + ABIE40_RS03520 0.88 +0.2 699,336 + ABIE40_RS03520 0.88 -0.7 699,336 + ABIE40_RS03520 0.88 -0.2 699,336 + ABIE40_RS03520 0.88 +0.6 699,336 + ABIE40_RS03520 0.88 +0.8 699,337 - ABIE40_RS03520 0.88 -0.7 699,337 - ABIE40_RS03520 0.88 -1.7 699,337 - ABIE40_RS03520 0.88 +0.8 699,337 - ABIE40_RS03520 0.88 +1.0 699,337 - ABIE40_RS03520 0.88 -2.9 699,337 - ABIE40_RS03520 0.88 +2.6 699,337 - ABIE40_RS03520 0.88 +1.2 699,337 - ABIE40_RS03520 0.88 +1.3 699,337 - ABIE40_RS03520 0.88 +0.8 699,337 - ABIE40_RS03520 0.88 +0.6 699,337 - ABIE40_RS03520 0.88 +1.4 699,338 + ABIE40_RS03520 0.88 +0.6 699,338 + ABIE40_RS03520 0.88 +0.6 699,338 + ABIE40_RS03520 0.88 -0.3 699,338 + ABIE40_RS03520 0.88 +0.1 699,339 - ABIE40_RS03520 0.88 -0.4 699,339 - ABIE40_RS03520 0.88 -1.1 699,339 - ABIE40_RS03520 0.88 -0.4 699,458 + -0.7 699,458 + -2.9 699,466 + -0.1 699,466 + -1.3
Or see this region's nucleotide sequence