Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02590

Experiment: L-Arabinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE40_RS02585 and ABIE40_RS02590 are separated by 13 nucleotidesABIE40_RS02590 and ABIE40_RS02595 are separated by 162 nucleotidesABIE40_RS02595 and ABIE40_RS02600 are separated by 69 nucleotides ABIE40_RS02585: ABIE40_RS02585 - acetyl-CoA C-acetyltransferase, at 510,697 to 511,905 _RS02585 ABIE40_RS02590: ABIE40_RS02590 - FAD-dependent oxidoreductase, at 511,919 to 514,133 _RS02590 ABIE40_RS02595: ABIE40_RS02595 - transcription elongation factor GreA, at 514,296 to 514,778 _RS02595 ABIE40_RS02600: ABIE40_RS02600 - DUF882 domain-containing protein, at 514,848 to 516,197 _RS02600 Position (kb) 511 512 513 514 515Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 510.928 kb on + strand, within ABIE40_RS02585at 510.928 kb on + strand, within ABIE40_RS02585at 510.928 kb on + strand, within ABIE40_RS02585at 510.929 kb on - strand, within ABIE40_RS02585at 510.929 kb on - strand, within ABIE40_RS02585at 510.929 kb on - strand, within ABIE40_RS02585at 510.929 kb on - strand, within ABIE40_RS02585at 511.126 kb on + strand, within ABIE40_RS02585at 511.127 kb on - strand, within ABIE40_RS02585at 511.127 kb on - strand, within ABIE40_RS02585at 511.171 kb on + strand, within ABIE40_RS02585at 511.171 kb on + strand, within ABIE40_RS02585at 511.171 kb on + strand, within ABIE40_RS02585at 511.201 kb on + strand, within ABIE40_RS02585at 511.202 kb on - strand, within ABIE40_RS02585at 511.202 kb on - strand, within ABIE40_RS02585at 511.249 kb on + strand, within ABIE40_RS02585at 511.249 kb on + strand, within ABIE40_RS02585at 511.249 kb on + strand, within ABIE40_RS02585at 511.250 kb on - strand, within ABIE40_RS02585at 511.250 kb on - strand, within ABIE40_RS02585at 511.441 kb on + strand, within ABIE40_RS02585at 511.441 kb on + strand, within ABIE40_RS02585at 511.441 kb on + strand, within ABIE40_RS02585at 511.441 kb on + strand, within ABIE40_RS02585at 511.441 kb on + strand, within ABIE40_RS02585at 511.442 kb on - strand, within ABIE40_RS02585at 511.442 kb on - strand, within ABIE40_RS02585at 511.442 kb on - strand, within ABIE40_RS02585at 511.442 kb on - strand, within ABIE40_RS02585at 511.442 kb on - strand, within ABIE40_RS02585at 511.442 kb on - strand, within ABIE40_RS02585at 511.442 kb on - strand, within ABIE40_RS02585at 511.654 kb on - strand, within ABIE40_RS02585at 511.702 kb on + strand, within ABIE40_RS02585at 511.702 kb on + strand, within ABIE40_RS02585at 511.702 kb on + strand, within ABIE40_RS02585at 511.703 kb on - strand, within ABIE40_RS02585at 511.703 kb on - strand, within ABIE40_RS02585at 511.703 kb on - strand, within ABIE40_RS02585at 511.703 kb on - strand, within ABIE40_RS02585at 511.703 kb on - strand, within ABIE40_RS02585at 511.703 kb on - strand, within ABIE40_RS02585at 511.703 kb on - strand, within ABIE40_RS02585at 511.925 kb on + strandat 511.925 kb on + strandat 511.925 kb on + strandat 511.925 kb on + strandat 511.926 kb on - strandat 511.926 kb on - strandat 511.926 kb on - strandat 512.154 kb on + strand, within ABIE40_RS02590at 512.695 kb on - strand, within ABIE40_RS02590at 512.695 kb on - strand, within ABIE40_RS02590at 512.727 kb on + strand, within ABIE40_RS02590at 512.728 kb on - strand, within ABIE40_RS02590at 512.728 kb on - strand, within ABIE40_RS02590at 512.728 kb on - strand, within ABIE40_RS02590at 512.728 kb on - strand, within ABIE40_RS02590at 512.728 kb on - strand, within ABIE40_RS02590at 512.778 kb on + strand, within ABIE40_RS02590at 512.946 kb on + strand, within ABIE40_RS02590at 512.946 kb on + strand, within ABIE40_RS02590at 512.946 kb on + strand, within ABIE40_RS02590at 512.946 kb on + strand, within ABIE40_RS02590at 512.946 kb on + strand, within ABIE40_RS02590at 512.946 kb on + strand, within ABIE40_RS02590at 512.947 kb on - strand, within ABIE40_RS02590at 512.947 kb on - strand, within ABIE40_RS02590at 512.947 kb on - strand, within ABIE40_RS02590at 512.947 kb on - strand, within ABIE40_RS02590at 512.947 kb on - strand, within ABIE40_RS02590at 512.947 kb on - strand, within ABIE40_RS02590at 513.117 kb on + strand, within ABIE40_RS02590at 513.118 kb on - strand, within ABIE40_RS02590at 513.396 kb on + strand, within ABIE40_RS02590at 513.396 kb on + strand, within ABIE40_RS02590at 513.397 kb on - strand, within ABIE40_RS02590at 513.474 kb on + strand, within ABIE40_RS02590at 513.475 kb on - strand, within ABIE40_RS02590at 513.489 kb on + strand, within ABIE40_RS02590at 513.489 kb on + strand, within ABIE40_RS02590at 513.490 kb on - strand, within ABIE40_RS02590at 513.490 kb on - strand, within ABIE40_RS02590at 513.729 kb on + strand, within ABIE40_RS02590at 513.729 kb on + strand, within ABIE40_RS02590at 513.729 kb on + strand, within ABIE40_RS02590at 513.729 kb on + strand, within ABIE40_RS02590at 513.729 kb on + strand, within ABIE40_RS02590at 513.729 kb on + strand, within ABIE40_RS02590at 513.730 kb on - strand, within ABIE40_RS02590at 513.730 kb on - strand, within ABIE40_RS02590at 513.730 kb on - strand, within ABIE40_RS02590at 513.786 kb on + strand, within ABIE40_RS02590at 513.786 kb on + strand, within ABIE40_RS02590at 513.786 kb on + strand, within ABIE40_RS02590at 513.884 kb on + strand, within ABIE40_RS02590at 513.884 kb on + strand, within ABIE40_RS02590at 513.884 kb on + strand, within ABIE40_RS02590at 513.884 kb on + strand, within ABIE40_RS02590at 513.885 kb on - strand, within ABIE40_RS02590at 513.920 kb on + strandat 513.946 kb on - strandat 513.946 kb on - strandat 513.966 kb on + strandat 513.966 kb on + strandat 513.966 kb on + strandat 513.966 kb on + strandat 513.967 kb on - strandat 513.967 kb on - strandat 513.967 kb on - strandat 513.967 kb on - strandat 513.967 kb on - strandat 514.026 kb on + strandat 514.027 kb on - strandat 514.027 kb on - strandat 514.089 kb on + strandat 514.090 kb on - strandat 514.132 kb on - strandat 514.150 kb on + strandat 514.150 kb on + strandat 514.250 kb on + strandat 514.250 kb on + strandat 514.250 kb on + strandat 514.250 kb on + strandat 514.251 kb on - strandat 514.251 kb on - strandat 514.251 kb on - strandat 514.251 kb on - strandat 514.310 kb on + strandat 514.441 kb on + strand, within ABIE40_RS02595at 514.441 kb on + strand, within ABIE40_RS02595at 514.441 kb on + strand, within ABIE40_RS02595at 514.441 kb on + strand, within ABIE40_RS02595at 514.441 kb on + strand, within ABIE40_RS02595at 514.441 kb on + strand, within ABIE40_RS02595at 514.442 kb on - strand, within ABIE40_RS02595at 514.442 kb on - strand, within ABIE40_RS02595at 514.442 kb on - strand, within ABIE40_RS02595at 514.927 kb on + strandat 514.928 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose (C)
remove
510,928 + ABIE40_RS02585 0.19 -2.3
510,928 + ABIE40_RS02585 0.19 -1.7
510,928 + ABIE40_RS02585 0.19 -2.0
510,929 - ABIE40_RS02585 0.19 -2.2
510,929 - ABIE40_RS02585 0.19 -1.1
510,929 - ABIE40_RS02585 0.19 -1.4
510,929 - ABIE40_RS02585 0.19 -2.7
511,126 + ABIE40_RS02585 0.35 -4.1
511,127 - ABIE40_RS02585 0.36 -0.2
511,127 - ABIE40_RS02585 0.36 -2.7
511,171 + ABIE40_RS02585 0.39 -4.3
511,171 + ABIE40_RS02585 0.39 -1.7
511,171 + ABIE40_RS02585 0.39 -3.1
511,201 + ABIE40_RS02585 0.42 -4.9
511,202 - ABIE40_RS02585 0.42 -0.8
511,202 - ABIE40_RS02585 0.42 -2.7
511,249 + ABIE40_RS02585 0.46 -2.2
511,249 + ABIE40_RS02585 0.46 +0.8
511,249 + ABIE40_RS02585 0.46 -3.2
511,250 - ABIE40_RS02585 0.46 -2.4
511,250 - ABIE40_RS02585 0.46 -3.7
511,441 + ABIE40_RS02585 0.62 -3.4
511,441 + ABIE40_RS02585 0.62 -2.4
511,441 + ABIE40_RS02585 0.62 -2.4
511,441 + ABIE40_RS02585 0.62 -2.0
511,441 + ABIE40_RS02585 0.62 -0.3
511,442 - ABIE40_RS02585 0.62 -2.1
511,442 - ABIE40_RS02585 0.62 -1.3
511,442 - ABIE40_RS02585 0.62 -1.4
511,442 - ABIE40_RS02585 0.62 -1.4
511,442 - ABIE40_RS02585 0.62 -0.1
511,442 - ABIE40_RS02585 0.62 -4.2
511,442 - ABIE40_RS02585 0.62 -0.8
511,654 - ABIE40_RS02585 0.79 -4.9
511,702 + ABIE40_RS02585 0.83 -3.6
511,702 + ABIE40_RS02585 0.83 -1.5
511,702 + ABIE40_RS02585 0.83 -0.2
511,703 - ABIE40_RS02585 0.83 -1.9
511,703 - ABIE40_RS02585 0.83 -0.7
511,703 - ABIE40_RS02585 0.83 -1.6
511,703 - ABIE40_RS02585 0.83 -4.0
511,703 - ABIE40_RS02585 0.83 -0.6
511,703 - ABIE40_RS02585 0.83 -4.3
511,703 - ABIE40_RS02585 0.83 -1.7
511,925 + -2.1
511,925 + -0.1
511,925 + -1.9
511,925 + -2.1
511,926 - -1.1
511,926 - -2.6
511,926 - +1.7
512,154 + ABIE40_RS02590 0.11 -1.3
512,695 - ABIE40_RS02590 0.35 -2.3
512,695 - ABIE40_RS02590 0.35 -2.2
512,727 + ABIE40_RS02590 0.36 -4.1
512,728 - ABIE40_RS02590 0.37 -4.1
512,728 - ABIE40_RS02590 0.37 -1.8
512,728 - ABIE40_RS02590 0.37 -3.6
512,728 - ABIE40_RS02590 0.37 +1.3
512,728 - ABIE40_RS02590 0.37 -1.0
512,778 + ABIE40_RS02590 0.39 -3.1
512,946 + ABIE40_RS02590 0.46 -2.7
512,946 + ABIE40_RS02590 0.46 -0.8
512,946 + ABIE40_RS02590 0.46 +1.0
512,946 + ABIE40_RS02590 0.46 -1.8
512,946 + ABIE40_RS02590 0.46 -2.9
512,946 + ABIE40_RS02590 0.46 -1.5
512,947 - ABIE40_RS02590 0.46 -0.6
512,947 - ABIE40_RS02590 0.46 -1.5
512,947 - ABIE40_RS02590 0.46 -2.3
512,947 - ABIE40_RS02590 0.46 -2.8
512,947 - ABIE40_RS02590 0.46 -4.5
512,947 - ABIE40_RS02590 0.46 -2.9
513,117 + ABIE40_RS02590 0.54 -2.9
513,118 - ABIE40_RS02590 0.54 -4.9
513,396 + ABIE40_RS02590 0.67 -2.3
513,396 + ABIE40_RS02590 0.67 -1.4
513,397 - ABIE40_RS02590 0.67 -2.4
513,474 + ABIE40_RS02590 0.70 -1.4
513,475 - ABIE40_RS02590 0.70 +0.1
513,489 + ABIE40_RS02590 0.71 -0.8
513,489 + ABIE40_RS02590 0.71 -1.9
513,490 - ABIE40_RS02590 0.71 -2.1
513,490 - ABIE40_RS02590 0.71 -0.2
513,729 + ABIE40_RS02590 0.82 -2.9
513,729 + ABIE40_RS02590 0.82 -4.9
513,729 + ABIE40_RS02590 0.82 -2.4
513,729 + ABIE40_RS02590 0.82 -0.1
513,729 + ABIE40_RS02590 0.82 -1.4
513,729 + ABIE40_RS02590 0.82 -3.2
513,730 - ABIE40_RS02590 0.82 -2.9
513,730 - ABIE40_RS02590 0.82 -3.8
513,730 - ABIE40_RS02590 0.82 -3.4
513,786 + ABIE40_RS02590 0.84 -1.2
513,786 + ABIE40_RS02590 0.84 -4.1
513,786 + ABIE40_RS02590 0.84 -2.6
513,884 + ABIE40_RS02590 0.89 -0.6
513,884 + ABIE40_RS02590 0.89 -1.5
513,884 + ABIE40_RS02590 0.89 -4.9
513,884 + ABIE40_RS02590 0.89 +0.4
513,885 - ABIE40_RS02590 0.89 -3.3
513,920 + -1.9
513,946 - -1.0
513,946 - -1.4
513,966 + -2.5
513,966 + -1.3
513,966 + -3.1
513,966 + -3.4
513,967 - -1.7
513,967 - -2.8
513,967 - -2.4
513,967 - -0.4
513,967 - -3.0
514,026 + -1.0
514,027 - -2.8
514,027 - -1.1
514,089 + +0.3
514,090 - +0.6
514,132 - -1.0
514,150 + +2.0
514,150 + +1.0
514,250 + -1.8
514,250 + -0.3
514,250 + -1.0
514,250 + -0.4
514,251 - -0.6
514,251 - -0.3
514,251 - -0.1
514,251 - +0.2
514,310 + -0.2
514,441 + ABIE40_RS02595 0.30 -0.5
514,441 + ABIE40_RS02595 0.30 +0.6
514,441 + ABIE40_RS02595 0.30 -0.2
514,441 + ABIE40_RS02595 0.30 +0.3
514,441 + ABIE40_RS02595 0.30 -0.0
514,441 + ABIE40_RS02595 0.30 -2.8
514,442 - ABIE40_RS02595 0.30 +0.2
514,442 - ABIE40_RS02595 0.30 +0.0
514,442 - ABIE40_RS02595 0.30 +1.1
514,927 + -0.1
514,928 - -0.5

Or see this region's nucleotide sequence