Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00620 and ABIE40_RS00625 overlap by 1 nucleotides ABIE40_RS00625 and ABIE40_RS00630 overlap by 4 nucleotides
ABIE40_RS00620: ABIE40_RS00620 - microcin C ABC transporter permease YejB, at 127,794 to 128,882
_RS00620
ABIE40_RS00625: ABIE40_RS00625 - ABC transporter permease, at 128,882 to 130,030
_RS00625
ABIE40_RS00630: ABIE40_RS00630 - ABC transporter ATP-binding protein, at 130,027 to 131,664
_RS00630
Position (kb) 128
129
130
131 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 128.005 kb on - strand, within ABIE40_RS00620 at 128.005 kb on - strand, within ABIE40_RS00620 at 128.109 kb on + strand, within ABIE40_RS00620 at 128.110 kb on - strand, within ABIE40_RS00620 at 128.110 kb on - strand, within ABIE40_RS00620 at 128.110 kb on - strand, within ABIE40_RS00620 at 128.174 kb on + strand, within ABIE40_RS00620 at 128.174 kb on + strand, within ABIE40_RS00620 at 128.174 kb on + strand, within ABIE40_RS00620 at 128.175 kb on - strand, within ABIE40_RS00620 at 128.223 kb on + strand, within ABIE40_RS00620 at 128.223 kb on + strand, within ABIE40_RS00620 at 128.223 kb on + strand, within ABIE40_RS00620 at 128.223 kb on + strand, within ABIE40_RS00620 at 128.376 kb on + strand, within ABIE40_RS00620 at 128.376 kb on + strand, within ABIE40_RS00620 at 128.376 kb on + strand, within ABIE40_RS00620 at 128.376 kb on + strand, within ABIE40_RS00620 at 128.376 kb on + strand, within ABIE40_RS00620 at 128.377 kb on - strand, within ABIE40_RS00620 at 128.377 kb on - strand, within ABIE40_RS00620 at 128.377 kb on - strand, within ABIE40_RS00620 at 128.377 kb on - strand, within ABIE40_RS00620 at 128.377 kb on - strand, within ABIE40_RS00620 at 128.556 kb on + strand, within ABIE40_RS00620 at 128.557 kb on - strand, within ABIE40_RS00620 at 128.557 kb on - strand, within ABIE40_RS00620 at 128.557 kb on - strand, within ABIE40_RS00620 at 128.557 kb on - strand, within ABIE40_RS00620 at 128.557 kb on - strand, within ABIE40_RS00620 at 128.557 kb on - strand, within ABIE40_RS00620 at 128.604 kb on + strand, within ABIE40_RS00620 at 128.605 kb on - strand, within ABIE40_RS00620 at 128.605 kb on - strand, within ABIE40_RS00620 at 128.605 kb on - strand, within ABIE40_RS00620 at 128.615 kb on - strand, within ABIE40_RS00620 at 128.615 kb on - strand, within ABIE40_RS00620 at 128.615 kb on - strand, within ABIE40_RS00620 at 128.736 kb on + strand, within ABIE40_RS00620 at 128.784 kb on + strand at 128.784 kb on + strand at 128.784 kb on + strand at 128.784 kb on + strand at 128.785 kb on - strand at 128.785 kb on - strand at 128.786 kb on + strand at 128.786 kb on + strand at 128.786 kb on + strand at 128.786 kb on + strand at 128.787 kb on - strand at 128.787 kb on - strand at 128.787 kb on - strand at 128.787 kb on - strand at 128.787 kb on - strand at 128.835 kb on + strand at 128.835 kb on + strand at 128.836 kb on - strand at 128.836 kb on - strand at 128.836 kb on - strand at 128.976 kb on + strand at 129.083 kb on + strand, within ABIE40_RS00625 at 129.083 kb on + strand, within ABIE40_RS00625 at 129.083 kb on + strand, within ABIE40_RS00625 at 129.084 kb on - strand, within ABIE40_RS00625 at 129.119 kb on + strand, within ABIE40_RS00625 at 129.162 kb on - strand, within ABIE40_RS00625 at 129.227 kb on + strand, within ABIE40_RS00625 at 129.227 kb on + strand, within ABIE40_RS00625 at 129.227 kb on + strand, within ABIE40_RS00625 at 129.228 kb on - strand, within ABIE40_RS00625 at 129.228 kb on - strand, within ABIE40_RS00625 at 129.233 kb on + strand, within ABIE40_RS00625 at 129.350 kb on + strand, within ABIE40_RS00625 at 129.350 kb on + strand, within ABIE40_RS00625 at 129.351 kb on - strand, within ABIE40_RS00625 at 129.413 kb on + strand, within ABIE40_RS00625 at 129.413 kb on + strand, within ABIE40_RS00625 at 129.413 kb on + strand, within ABIE40_RS00625 at 129.413 kb on + strand, within ABIE40_RS00625 at 129.413 kb on + strand, within ABIE40_RS00625 at 129.414 kb on - strand, within ABIE40_RS00625 at 129.414 kb on - strand, within ABIE40_RS00625 at 129.414 kb on - strand, within ABIE40_RS00625 at 129.414 kb on - strand, within ABIE40_RS00625 at 129.414 kb on - strand, within ABIE40_RS00625 at 129.424 kb on + strand, within ABIE40_RS00625 at 129.424 kb on + strand, within ABIE40_RS00625 at 129.424 kb on + strand, within ABIE40_RS00625 at 129.424 kb on + strand, within ABIE40_RS00625 at 129.425 kb on - strand, within ABIE40_RS00625 at 129.500 kb on + strand, within ABIE40_RS00625 at 129.501 kb on - strand, within ABIE40_RS00625 at 129.569 kb on + strand, within ABIE40_RS00625 at 129.569 kb on + strand, within ABIE40_RS00625 at 129.569 kb on + strand, within ABIE40_RS00625 at 129.569 kb on + strand, within ABIE40_RS00625 at 129.570 kb on - strand, within ABIE40_RS00625 at 129.570 kb on - strand, within ABIE40_RS00625 at 129.570 kb on - strand, within ABIE40_RS00625 at 129.570 kb on - strand, within ABIE40_RS00625 at 129.701 kb on + strand, within ABIE40_RS00625 at 129.702 kb on - strand, within ABIE40_RS00625 at 129.702 kb on - strand, within ABIE40_RS00625 at 129.702 kb on - strand, within ABIE40_RS00625 at 129.857 kb on - strand, within ABIE40_RS00625 at 130.216 kb on + strand, within ABIE40_RS00630 at 130.410 kb on - strand, within ABIE40_RS00630 at 130.446 kb on - strand, within ABIE40_RS00630 at 130.789 kb on + strand, within ABIE40_RS00630 at 130.789 kb on + strand, within ABIE40_RS00630 at 130.789 kb on + strand, within ABIE40_RS00630 at 130.790 kb on - strand, within ABIE40_RS00630 at 130.790 kb on - strand, within ABIE40_RS00630 at 130.790 kb on - strand, within ABIE40_RS00630 at 130.791 kb on + strand, within ABIE40_RS00630 at 130.792 kb on - strand, within ABIE40_RS00630 at 130.931 kb on + strand, within ABIE40_RS00630
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 128,005 - ABIE40_RS00620 0.19 -1.4 128,005 - ABIE40_RS00620 0.19 +0.5 128,109 + ABIE40_RS00620 0.29 -4.9 128,110 - ABIE40_RS00620 0.29 -2.0 128,110 - ABIE40_RS00620 0.29 -3.3 128,110 - ABIE40_RS00620 0.29 -1.9 128,174 + ABIE40_RS00620 0.35 -0.7 128,174 + ABIE40_RS00620 0.35 -1.1 128,174 + ABIE40_RS00620 0.35 -1.1 128,175 - ABIE40_RS00620 0.35 -2.1 128,223 + ABIE40_RS00620 0.39 -1.7 128,223 + ABIE40_RS00620 0.39 -1.7 128,223 + ABIE40_RS00620 0.39 -2.1 128,223 + ABIE40_RS00620 0.39 +1.3 128,376 + ABIE40_RS00620 0.53 +1.4 128,376 + ABIE40_RS00620 0.53 -3.6 128,376 + ABIE40_RS00620 0.53 +2.1 128,376 + ABIE40_RS00620 0.53 -3.8 128,376 + ABIE40_RS00620 0.53 -2.4 128,377 - ABIE40_RS00620 0.54 -1.9 128,377 - ABIE40_RS00620 0.54 -1.0 128,377 - ABIE40_RS00620 0.54 -3.7 128,377 - ABIE40_RS00620 0.54 -1.5 128,377 - ABIE40_RS00620 0.54 -1.7 128,556 + ABIE40_RS00620 0.70 -1.6 128,557 - ABIE40_RS00620 0.70 +0.2 128,557 - ABIE40_RS00620 0.70 -1.2 128,557 - ABIE40_RS00620 0.70 -1.6 128,557 - ABIE40_RS00620 0.70 -2.6 128,557 - ABIE40_RS00620 0.70 -2.5 128,557 - ABIE40_RS00620 0.70 +0.8 128,604 + ABIE40_RS00620 0.74 -0.4 128,605 - ABIE40_RS00620 0.74 -2.4 128,605 - ABIE40_RS00620 0.74 -3.7 128,605 - ABIE40_RS00620 0.74 -3.5 128,615 - ABIE40_RS00620 0.75 -3.2 128,615 - ABIE40_RS00620 0.75 -0.2 128,615 - ABIE40_RS00620 0.75 -4.4 128,736 + ABIE40_RS00620 0.87 -1.7 128,784 + -3.0 128,784 + -2.7 128,784 + -0.4 128,784 + -0.5 128,785 - -2.1 128,785 - -2.5 128,786 + -2.3 128,786 + -1.2 128,786 + -2.4 128,786 + -0.2 128,787 - -0.5 128,787 - -1.1 128,787 - -1.6 128,787 - -0.5 128,787 - -3.3 128,835 + -2.2 128,835 + -0.9 128,836 - -3.6 128,836 - -3.2 128,836 - -3.0 128,976 + -0.8 129,083 + ABIE40_RS00625 0.17 -2.1 129,083 + ABIE40_RS00625 0.17 -4.9 129,083 + ABIE40_RS00625 0.17 -2.6 129,084 - ABIE40_RS00625 0.18 -1.2 129,119 + ABIE40_RS00625 0.21 -1.4 129,162 - ABIE40_RS00625 0.24 -3.2 129,227 + ABIE40_RS00625 0.30 -0.1 129,227 + ABIE40_RS00625 0.30 -1.2 129,227 + ABIE40_RS00625 0.30 -3.0 129,228 - ABIE40_RS00625 0.30 -3.2 129,228 - ABIE40_RS00625 0.30 -2.1 129,233 + ABIE40_RS00625 0.31 -0.2 129,350 + ABIE40_RS00625 0.41 -2.2 129,350 + ABIE40_RS00625 0.41 -2.8 129,351 - ABIE40_RS00625 0.41 -1.2 129,413 + ABIE40_RS00625 0.46 -0.7 129,413 + ABIE40_RS00625 0.46 +0.7 129,413 + ABIE40_RS00625 0.46 -2.0 129,413 + ABIE40_RS00625 0.46 -1.2 129,413 + ABIE40_RS00625 0.46 -4.6 129,414 - ABIE40_RS00625 0.46 -0.2 129,414 - ABIE40_RS00625 0.46 -1.9 129,414 - ABIE40_RS00625 0.46 -0.9 129,414 - ABIE40_RS00625 0.46 -3.5 129,414 - ABIE40_RS00625 0.46 +2.1 129,424 + ABIE40_RS00625 0.47 -1.2 129,424 + ABIE40_RS00625 0.47 -2.0 129,424 + ABIE40_RS00625 0.47 -0.4 129,424 + ABIE40_RS00625 0.47 -0.7 129,425 - ABIE40_RS00625 0.47 +1.1 129,500 + ABIE40_RS00625 0.54 -3.1 129,501 - ABIE40_RS00625 0.54 -1.8 129,569 + ABIE40_RS00625 0.60 -2.1 129,569 + ABIE40_RS00625 0.60 -1.9 129,569 + ABIE40_RS00625 0.60 -1.9 129,569 + ABIE40_RS00625 0.60 -2.2 129,570 - ABIE40_RS00625 0.60 -2.4 129,570 - ABIE40_RS00625 0.60 -1.7 129,570 - ABIE40_RS00625 0.60 -0.4 129,570 - ABIE40_RS00625 0.60 -2.2 129,701 + ABIE40_RS00625 0.71 -1.5 129,702 - ABIE40_RS00625 0.71 -2.6 129,702 - ABIE40_RS00625 0.71 -1.4 129,702 - ABIE40_RS00625 0.71 -1.4 129,857 - ABIE40_RS00625 0.85 -2.5 130,216 + ABIE40_RS00630 0.12 -1.5 130,410 - ABIE40_RS00630 0.23 -0.2 130,446 - ABIE40_RS00630 0.26 -4.4 130,789 + ABIE40_RS00630 0.47 -2.1 130,789 + ABIE40_RS00630 0.47 -2.1 130,789 + ABIE40_RS00630 0.47 +0.1 130,790 - ABIE40_RS00630 0.47 -2.2 130,790 - ABIE40_RS00630 0.47 -0.7 130,790 - ABIE40_RS00630 0.47 -3.1 130,791 + ABIE40_RS00630 0.47 -0.7 130,792 - ABIE40_RS00630 0.47 -0.7 130,931 + ABIE40_RS00630 0.55 -2.2
Or see this region's nucleotide sequence