Experiment: L-Arabinose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS00470 and ABIE40_RS00475 are separated by 466 nucleotides ABIE40_RS00475 and ABIE40_RS00480 are separated by 216 nucleotides
ABIE40_RS00470: ABIE40_RS00470 - SH3 domain-containing protein, at 93,850 to 94,683
_RS00470
ABIE40_RS00475: ABIE40_RS00475 - dipeptidase, at 95,150 to 96,535
_RS00475
ABIE40_RS00480: ABIE40_RS00480 - EAL domain-containing protein, at 96,752 to 99,130
_RS00480
Position (kb) 95
96
97 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 94.313 kb on + strand, within ABIE40_RS00470 at 94.313 kb on + strand, within ABIE40_RS00470 at 94.314 kb on - strand, within ABIE40_RS00470 at 94.331 kb on + strand, within ABIE40_RS00470 at 94.332 kb on - strand, within ABIE40_RS00470 at 94.334 kb on + strand, within ABIE40_RS00470 at 94.335 kb on - strand, within ABIE40_RS00470 at 94.347 kb on - strand, within ABIE40_RS00470 at 94.347 kb on - strand, within ABIE40_RS00470 at 94.347 kb on - strand, within ABIE40_RS00470 at 94.347 kb on - strand, within ABIE40_RS00470 at 94.347 kb on - strand, within ABIE40_RS00470 at 94.394 kb on + strand, within ABIE40_RS00470 at 94.394 kb on + strand, within ABIE40_RS00470 at 94.410 kb on - strand, within ABIE40_RS00470 at 94.410 kb on - strand, within ABIE40_RS00470 at 94.427 kb on + strand, within ABIE40_RS00470 at 94.428 kb on - strand, within ABIE40_RS00470 at 94.472 kb on + strand, within ABIE40_RS00470 at 94.472 kb on + strand, within ABIE40_RS00470 at 94.473 kb on - strand, within ABIE40_RS00470 at 94.516 kb on + strand, within ABIE40_RS00470 at 94.516 kb on + strand, within ABIE40_RS00470 at 94.516 kb on + strand, within ABIE40_RS00470 at 94.516 kb on + strand, within ABIE40_RS00470 at 94.516 kb on + strand, within ABIE40_RS00470 at 94.517 kb on - strand, within ABIE40_RS00470 at 94.696 kb on + strand at 94.696 kb on + strand at 94.760 kb on + strand at 94.760 kb on + strand at 94.760 kb on + strand at 94.761 kb on - strand at 94.761 kb on - strand at 94.764 kb on + strand at 94.764 kb on + strand at 94.764 kb on + strand at 94.765 kb on - strand at 94.765 kb on - strand at 94.765 kb on - strand at 94.765 kb on - strand at 94.765 kb on - strand at 94.765 kb on - strand at 94.765 kb on - strand at 94.783 kb on + strand at 94.823 kb on + strand at 94.823 kb on + strand at 94.823 kb on + strand at 94.824 kb on - strand at 94.893 kb on - strand at 94.898 kb on + strand at 94.898 kb on + strand at 94.898 kb on + strand at 94.899 kb on - strand at 94.899 kb on - strand at 94.900 kb on + strand at 94.900 kb on + strand at 94.900 kb on + strand at 94.901 kb on - strand at 94.901 kb on - strand at 94.914 kb on + strand at 95.021 kb on + strand at 95.021 kb on + strand at 95.021 kb on + strand at 95.022 kb on - strand at 95.022 kb on - strand at 95.048 kb on + strand at 95.151 kb on + strand at 95.152 kb on - strand at 95.170 kb on + strand at 95.171 kb on - strand at 95.171 kb on - strand at 95.199 kb on + strand at 95.199 kb on + strand at 95.214 kb on + strand at 95.215 kb on - strand at 95.477 kb on - strand, within ABIE40_RS00475 at 95.477 kb on - strand, within ABIE40_RS00475 at 95.478 kb on + strand, within ABIE40_RS00475 at 95.478 kb on + strand, within ABIE40_RS00475 at 95.479 kb on - strand, within ABIE40_RS00475 at 95.479 kb on - strand, within ABIE40_RS00475 at 95.479 kb on - strand, within ABIE40_RS00475 at 95.479 kb on - strand, within ABIE40_RS00475 at 95.587 kb on + strand, within ABIE40_RS00475 at 95.587 kb on + strand, within ABIE40_RS00475 at 95.587 kb on + strand, within ABIE40_RS00475 at 95.589 kb on + strand, within ABIE40_RS00475 at 95.589 kb on + strand, within ABIE40_RS00475 at 95.590 kb on - strand, within ABIE40_RS00475 at 95.590 kb on - strand, within ABIE40_RS00475 at 95.672 kb on + strand, within ABIE40_RS00475 at 95.740 kb on + strand, within ABIE40_RS00475 at 95.769 kb on + strand, within ABIE40_RS00475 at 95.833 kb on + strand, within ABIE40_RS00475 at 95.903 kb on + strand, within ABIE40_RS00475 at 95.903 kb on + strand, within ABIE40_RS00475 at 95.903 kb on + strand, within ABIE40_RS00475 at 95.904 kb on - strand, within ABIE40_RS00475 at 95.904 kb on - strand, within ABIE40_RS00475 at 95.904 kb on - strand, within ABIE40_RS00475 at 95.971 kb on + strand, within ABIE40_RS00475 at 96.111 kb on + strand, within ABIE40_RS00475 at 96.112 kb on - strand, within ABIE40_RS00475 at 96.267 kb on + strand, within ABIE40_RS00475 at 96.267 kb on + strand, within ABIE40_RS00475 at 96.267 kb on + strand, within ABIE40_RS00475 at 96.268 kb on - strand, within ABIE40_RS00475 at 96.268 kb on - strand, within ABIE40_RS00475 at 96.276 kb on + strand, within ABIE40_RS00475 at 96.276 kb on + strand, within ABIE40_RS00475 at 96.277 kb on - strand, within ABIE40_RS00475 at 96.277 kb on - strand, within ABIE40_RS00475 at 96.277 kb on - strand, within ABIE40_RS00475 at 96.277 kb on - strand, within ABIE40_RS00475 at 96.385 kb on - strand, within ABIE40_RS00475 at 96.424 kb on + strand at 96.425 kb on - strand at 96.426 kb on + strand at 96.427 kb on - strand at 96.427 kb on - strand at 96.568 kb on + strand at 96.569 kb on - strand at 96.647 kb on + strand at 96.647 kb on + strand at 96.647 kb on + strand at 96.647 kb on + strand at 96.647 kb on + strand at 96.647 kb on + strand at 96.647 kb on + strand at 96.647 kb on + strand at 96.647 kb on + strand at 96.647 kb on + strand at 96.647 kb on + strand at 96.647 kb on + strand at 96.647 kb on + strand at 96.648 kb on - strand at 96.648 kb on - strand at 96.648 kb on - strand at 96.648 kb on - strand at 96.648 kb on - strand at 96.648 kb on - strand at 96.648 kb on - strand at 96.648 kb on - strand at 96.648 kb on - strand at 96.648 kb on - strand at 96.721 kb on + strand at 96.721 kb on + strand at 96.721 kb on + strand at 96.722 kb on - strand at 96.722 kb on - strand at 96.722 kb on - strand at 96.722 kb on - strand at 96.722 kb on - strand at 96.722 kb on - strand at 96.965 kb on + strand at 96.965 kb on + strand at 96.965 kb on + strand at 96.966 kb on - strand at 96.966 kb on - strand at 96.966 kb on - strand at 96.990 kb on - strand, within ABIE40_RS00480 at 96.990 kb on - strand, within ABIE40_RS00480 at 97.004 kb on - strand, within ABIE40_RS00480 at 97.175 kb on + strand, within ABIE40_RS00480 at 97.175 kb on + strand, within ABIE40_RS00480 at 97.175 kb on + strand, within ABIE40_RS00480 at 97.175 kb on + strand, within ABIE40_RS00480 at 97.184 kb on + strand, within ABIE40_RS00480 at 97.184 kb on + strand, within ABIE40_RS00480 at 97.184 kb on + strand, within ABIE40_RS00480 at 97.184 kb on + strand, within ABIE40_RS00480 at 97.184 kb on + strand, within ABIE40_RS00480 at 97.184 kb on + strand, within ABIE40_RS00480 at 97.184 kb on + strand, within ABIE40_RS00480 at 97.185 kb on - strand, within ABIE40_RS00480 at 97.185 kb on - strand, within ABIE40_RS00480 at 97.185 kb on - strand, within ABIE40_RS00480 at 97.185 kb on - strand, within ABIE40_RS00480 at 97.185 kb on - strand, within ABIE40_RS00480 at 97.185 kb on - strand, within ABIE40_RS00480 at 97.185 kb on - strand, within ABIE40_RS00480 at 97.185 kb on - strand, within ABIE40_RS00480
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose (C) remove 94,313 + ABIE40_RS00470 0.56 +1.6 94,313 + ABIE40_RS00470 0.56 +1.2 94,314 - ABIE40_RS00470 0.56 -0.3 94,331 + ABIE40_RS00470 0.58 -1.1 94,332 - ABIE40_RS00470 0.58 +1.1 94,334 + ABIE40_RS00470 0.58 -0.9 94,335 - ABIE40_RS00470 0.58 +0.9 94,347 - ABIE40_RS00470 0.60 +0.3 94,347 - ABIE40_RS00470 0.60 -1.0 94,347 - ABIE40_RS00470 0.60 -1.1 94,347 - ABIE40_RS00470 0.60 -0.1 94,347 - ABIE40_RS00470 0.60 -2.6 94,394 + ABIE40_RS00470 0.65 -0.7 94,394 + ABIE40_RS00470 0.65 +0.4 94,410 - ABIE40_RS00470 0.67 +0.1 94,410 - ABIE40_RS00470 0.67 -0.1 94,427 + ABIE40_RS00470 0.69 -1.1 94,428 - ABIE40_RS00470 0.69 -2.1 94,472 + ABIE40_RS00470 0.75 +0.4 94,472 + ABIE40_RS00470 0.75 +0.3 94,473 - ABIE40_RS00470 0.75 +0.1 94,516 + ABIE40_RS00470 0.80 -1.2 94,516 + ABIE40_RS00470 0.80 -0.5 94,516 + ABIE40_RS00470 0.80 -2.5 94,516 + ABIE40_RS00470 0.80 -1.1 94,516 + ABIE40_RS00470 0.80 -0.7 94,517 - ABIE40_RS00470 0.80 -1.2 94,696 + -2.7 94,696 + -1.0 94,760 + +0.2 94,760 + -0.0 94,760 + -1.1 94,761 - -0.2 94,761 - +0.3 94,764 + -2.0 94,764 + -0.8 94,764 + +2.1 94,765 - -0.1 94,765 - -2.5 94,765 - +0.1 94,765 - -0.9 94,765 - -1.5 94,765 - -1.0 94,765 - -1.1 94,783 + +0.3 94,823 + +1.8 94,823 + +1.7 94,823 + +0.0 94,824 - -1.3 94,893 - -0.2 94,898 + +0.2 94,898 + -0.7 94,898 + +1.0 94,899 - +0.2 94,899 - -0.2 94,900 + -0.6 94,900 + -0.1 94,900 + +1.1 94,901 - -2.5 94,901 - +1.2 94,914 + -0.3 95,021 + -0.0 95,021 + +2.1 95,021 + +1.7 95,022 - -0.1 95,022 - -0.4 95,048 + -0.6 95,151 + -2.1 95,152 - +1.1 95,170 + -1.9 95,171 - -1.1 95,171 - -1.4 95,199 + +0.5 95,199 + -1.6 95,214 + -0.3 95,215 - -0.2 95,477 - ABIE40_RS00475 0.24 +2.3 95,477 - ABIE40_RS00475 0.24 -1.9 95,478 + ABIE40_RS00475 0.24 -1.1 95,478 + ABIE40_RS00475 0.24 -1.1 95,479 - ABIE40_RS00475 0.24 -0.3 95,479 - ABIE40_RS00475 0.24 -1.5 95,479 - ABIE40_RS00475 0.24 -0.2 95,479 - ABIE40_RS00475 0.24 +0.1 95,587 + ABIE40_RS00475 0.32 +0.1 95,587 + ABIE40_RS00475 0.32 -0.2 95,587 + ABIE40_RS00475 0.32 -0.0 95,589 + ABIE40_RS00475 0.32 -2.1 95,589 + ABIE40_RS00475 0.32 +2.1 95,590 - ABIE40_RS00475 0.32 -0.8 95,590 - ABIE40_RS00475 0.32 -1.1 95,672 + ABIE40_RS00475 0.38 +1.5 95,740 + ABIE40_RS00475 0.43 +0.6 95,769 + ABIE40_RS00475 0.45 +1.0 95,833 + ABIE40_RS00475 0.49 -1.9 95,903 + ABIE40_RS00475 0.54 -0.6 95,903 + ABIE40_RS00475 0.54 -1.4 95,903 + ABIE40_RS00475 0.54 -0.2 95,904 - ABIE40_RS00475 0.54 -2.2 95,904 - ABIE40_RS00475 0.54 +0.2 95,904 - ABIE40_RS00475 0.54 -0.2 95,971 + ABIE40_RS00475 0.59 -1.2 96,111 + ABIE40_RS00475 0.69 -1.1 96,112 - ABIE40_RS00475 0.69 -1.4 96,267 + ABIE40_RS00475 0.81 -1.1 96,267 + ABIE40_RS00475 0.81 -0.1 96,267 + ABIE40_RS00475 0.81 -0.1 96,268 - ABIE40_RS00475 0.81 -0.2 96,268 - ABIE40_RS00475 0.81 +2.0 96,276 + ABIE40_RS00475 0.81 +0.1 96,276 + ABIE40_RS00475 0.81 +1.2 96,277 - ABIE40_RS00475 0.81 +1.5 96,277 - ABIE40_RS00475 0.81 +0.0 96,277 - ABIE40_RS00475 0.81 -0.5 96,277 - ABIE40_RS00475 0.81 -2.8 96,385 - ABIE40_RS00475 0.89 -0.7 96,424 + -0.6 96,425 - +2.1 96,426 + +0.5 96,427 - -1.5 96,427 - -0.7 96,568 + -0.6 96,569 - +2.1 96,647 + +1.1 96,647 + -0.1 96,647 + +0.3 96,647 + -2.8 96,647 + +1.0 96,647 + -1.4 96,647 + -0.2 96,647 + +2.1 96,647 + +0.6 96,647 + -1.0 96,647 + -0.7 96,647 + +0.9 96,647 + -0.3 96,648 - +0.5 96,648 - +0.8 96,648 - +0.2 96,648 - -2.5 96,648 - -1.6 96,648 - -0.1 96,648 - -1.2 96,648 - -1.2 96,648 - -0.5 96,648 - +1.1 96,721 + +0.9 96,721 + +0.1 96,721 + +0.1 96,722 - +1.1 96,722 - -1.9 96,722 - -2.4 96,722 - -1.8 96,722 - +0.6 96,722 - +0.2 96,965 + +0.5 96,965 + -1.2 96,965 + +1.1 96,966 - +0.3 96,966 - -0.3 96,966 - +0.4 96,990 - ABIE40_RS00480 0.10 -0.4 96,990 - ABIE40_RS00480 0.10 +1.2 97,004 - ABIE40_RS00480 0.11 +0.4 97,175 + ABIE40_RS00480 0.18 -1.5 97,175 + ABIE40_RS00480 0.18 -1.2 97,175 + ABIE40_RS00480 0.18 +1.1 97,175 + ABIE40_RS00480 0.18 -0.4 97,184 + ABIE40_RS00480 0.18 +0.4 97,184 + ABIE40_RS00480 0.18 -0.1 97,184 + ABIE40_RS00480 0.18 +0.9 97,184 + ABIE40_RS00480 0.18 -1.4 97,184 + ABIE40_RS00480 0.18 -0.4 97,184 + ABIE40_RS00480 0.18 -1.0 97,184 + ABIE40_RS00480 0.18 -1.2 97,185 - ABIE40_RS00480 0.18 -0.6 97,185 - ABIE40_RS00480 0.18 -0.1 97,185 - ABIE40_RS00480 0.18 -1.8 97,185 - ABIE40_RS00480 0.18 -0.4 97,185 - ABIE40_RS00480 0.18 +1.2 97,185 - ABIE40_RS00480 0.18 -0.1 97,185 - ABIE40_RS00480 0.18 -2.1 97,185 - ABIE40_RS00480 0.18 -1.6
Or see this region's nucleotide sequence