Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24840 and ABID97_RS24845 are separated by 114 nucleotides ABID97_RS24845 and ABID97_RS24850 overlap by 4 nucleotides ABID97_RS24850 and ABID97_RS24855 are separated by 7 nucleotides
ABID97_RS24840: ABID97_RS24840 - PLP-dependent aminotransferase family protein, at 5,147,477 to 5,148,937
_RS24840
ABID97_RS24845: ABID97_RS24845 - DUF2970 domain-containing protein, at 5,149,052 to 5,149,228
_RS24845
ABID97_RS24850: ABID97_RS24850 - cytochrome c4, at 5,149,225 to 5,149,929
_RS24850
ABID97_RS24855: ABID97_RS24855 - c-type cytochrome, at 5,149,937 to 5,151,223
_RS24855
Position (kb) 5149
5150 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5148.321 kb on + strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.322 kb on - strand, within ABID97_RS24840 at 5148.453 kb on + strand, within ABID97_RS24840 at 5148.453 kb on + strand, within ABID97_RS24840 at 5148.744 kb on + strand, within ABID97_RS24840 at 5148.744 kb on + strand, within ABID97_RS24840 at 5148.744 kb on + strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.745 kb on - strand, within ABID97_RS24840 at 5148.747 kb on + strand, within ABID97_RS24840 at 5148.747 kb on + strand, within ABID97_RS24840 at 5148.795 kb on + strand at 5148.796 kb on - strand at 5148.796 kb on - strand at 5148.799 kb on - strand at 5148.971 kb on + strand at 5148.972 kb on - strand at 5149.062 kb on + strand at 5149.063 kb on - strand at 5149.414 kb on + strand, within ABID97_RS24850 at 5149.474 kb on + strand, within ABID97_RS24850 at 5149.474 kb on + strand, within ABID97_RS24850 at 5149.474 kb on + strand, within ABID97_RS24850 at 5149.474 kb on + strand, within ABID97_RS24850 at 5149.474 kb on + strand, within ABID97_RS24850 at 5149.474 kb on + strand, within ABID97_RS24850 at 5149.475 kb on - strand, within ABID97_RS24850 at 5149.475 kb on - strand, within ABID97_RS24850 at 5149.475 kb on - strand, within ABID97_RS24850 at 5149.475 kb on - strand, within ABID97_RS24850 at 5149.475 kb on - strand, within ABID97_RS24850 at 5149.501 kb on + strand, within ABID97_RS24850 at 5149.522 kb on + strand, within ABID97_RS24850 at 5149.523 kb on - strand, within ABID97_RS24850 at 5149.523 kb on - strand, within ABID97_RS24850 at 5149.546 kb on + strand, within ABID97_RS24850 at 5149.720 kb on + strand, within ABID97_RS24850 at 5149.721 kb on - strand, within ABID97_RS24850 at 5150.100 kb on - strand, within ABID97_RS24855 at 5150.366 kb on + strand, within ABID97_RS24855 at 5150.366 kb on + strand, within ABID97_RS24855 at 5150.366 kb on + strand, within ABID97_RS24855 at 5150.366 kb on + strand, within ABID97_RS24855 at 5150.367 kb on - strand, within ABID97_RS24855 at 5150.367 kb on - strand, within ABID97_RS24855 at 5150.367 kb on - strand, within ABID97_RS24855 at 5150.367 kb on - strand, within ABID97_RS24855 at 5150.458 kb on - strand, within ABID97_RS24855 at 5150.458 kb on - strand, within ABID97_RS24855 at 5150.534 kb on + strand, within ABID97_RS24855 at 5150.648 kb on + strand, within ABID97_RS24855 at 5150.649 kb on - strand, within ABID97_RS24855 at 5150.792 kb on + strand, within ABID97_RS24855 at 5150.793 kb on - strand, within ABID97_RS24855 at 5150.793 kb on - strand, within ABID97_RS24855 at 5150.828 kb on + strand, within ABID97_RS24855 at 5150.829 kb on - strand, within ABID97_RS24855
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 5,148,321 + ABID97_RS24840 0.58 -0.1 5,148,322 - ABID97_RS24840 0.58 +0.3 5,148,322 - ABID97_RS24840 0.58 -0.1 5,148,322 - ABID97_RS24840 0.58 -0.3 5,148,322 - ABID97_RS24840 0.58 +0.2 5,148,322 - ABID97_RS24840 0.58 -0.2 5,148,453 + ABID97_RS24840 0.67 +0.2 5,148,453 + ABID97_RS24840 0.67 -0.7 5,148,744 + ABID97_RS24840 0.87 +0.3 5,148,744 + ABID97_RS24840 0.87 +0.0 5,148,744 + ABID97_RS24840 0.87 +2.3 5,148,745 - ABID97_RS24840 0.87 -0.2 5,148,745 - ABID97_RS24840 0.87 -0.1 5,148,745 - ABID97_RS24840 0.87 -2.1 5,148,745 - ABID97_RS24840 0.87 -0.0 5,148,745 - ABID97_RS24840 0.87 +0.4 5,148,745 - ABID97_RS24840 0.87 +0.1 5,148,745 - ABID97_RS24840 0.87 +1.3 5,148,745 - ABID97_RS24840 0.87 -0.2 5,148,747 + ABID97_RS24840 0.87 +0.2 5,148,747 + ABID97_RS24840 0.87 +0.4 5,148,795 + +0.2 5,148,796 - -0.2 5,148,796 - -0.2 5,148,799 - -0.1 5,148,971 + -0.1 5,148,972 - -0.4 5,149,062 + -0.3 5,149,063 - -0.4 5,149,414 + ABID97_RS24850 0.27 -0.3 5,149,474 + ABID97_RS24850 0.35 +0.2 5,149,474 + ABID97_RS24850 0.35 +0.3 5,149,474 + ABID97_RS24850 0.35 +0.0 5,149,474 + ABID97_RS24850 0.35 -0.3 5,149,474 + ABID97_RS24850 0.35 -0.3 5,149,474 + ABID97_RS24850 0.35 +0.0 5,149,475 - ABID97_RS24850 0.35 +1.1 5,149,475 - ABID97_RS24850 0.35 -0.9 5,149,475 - ABID97_RS24850 0.35 -0.3 5,149,475 - ABID97_RS24850 0.35 +1.6 5,149,475 - ABID97_RS24850 0.35 +0.0 5,149,501 + ABID97_RS24850 0.39 -0.3 5,149,522 + ABID97_RS24850 0.42 -1.0 5,149,523 - ABID97_RS24850 0.42 +0.1 5,149,523 - ABID97_RS24850 0.42 -0.5 5,149,546 + ABID97_RS24850 0.46 +0.0 5,149,720 + ABID97_RS24850 0.70 -0.2 5,149,721 - ABID97_RS24850 0.70 -0.3 5,150,100 - ABID97_RS24855 0.13 -0.4 5,150,366 + ABID97_RS24855 0.33 +0.0 5,150,366 + ABID97_RS24855 0.33 -0.8 5,150,366 + ABID97_RS24855 0.33 +0.9 5,150,366 + ABID97_RS24855 0.33 -1.2 5,150,367 - ABID97_RS24855 0.33 -0.5 5,150,367 - ABID97_RS24855 0.33 -0.7 5,150,367 - ABID97_RS24855 0.33 -0.1 5,150,367 - ABID97_RS24855 0.33 -1.6 5,150,458 - ABID97_RS24855 0.40 +0.3 5,150,458 - ABID97_RS24855 0.40 -1.0 5,150,534 + ABID97_RS24855 0.46 -0.4 5,150,648 + ABID97_RS24855 0.55 -1.2 5,150,649 - ABID97_RS24855 0.55 -0.3 5,150,792 + ABID97_RS24855 0.66 -0.1 5,150,793 - ABID97_RS24855 0.67 -0.3 5,150,793 - ABID97_RS24855 0.67 -0.6 5,150,828 + ABID97_RS24855 0.69 +0.4 5,150,829 - ABID97_RS24855 0.69 -0.3
Or see this region's nucleotide sequence