Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS24230 and ABID97_RS24235 overlap by 4 nucleotides ABID97_RS24235 and ABID97_RS24240 are separated by 1 nucleotides ABID97_RS24240 and ABID97_RS24245 are separated by 13 nucleotides ABID97_RS24245 and ABID97_RS24250 are separated by 110 nucleotides
ABID97_RS24230: ABID97_RS24230 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 5,007,010 to 5,008,200
_RS24230
ABID97_RS24235: ABID97_RS24235 - WbqC family protein, at 5,008,197 to 5,008,940
_RS24235
ABID97_RS24240: ABID97_RS24240 - hypothetical protein, at 5,008,942 to 5,009,958
_RS24240
ABID97_RS24245: ABID97_RS24245 - methyltransferase domain-containing protein, at 5,009,972 to 5,010,673
_RS24245
ABID97_RS24250: ABID97_RS24250 - rhamnan synthesis F family protein, at 5,010,784 to 5,015,271
_RS24250
Position (kb) 5008
5009
5010 Strain fitness (log2 ratio) -1
0
1
2
3 at 5007.976 kb on + strand, within ABID97_RS24230 at 5007.977 kb on - strand, within ABID97_RS24230 at 5008.015 kb on + strand, within ABID97_RS24230 at 5008.048 kb on + strand, within ABID97_RS24230 at 5008.049 kb on - strand, within ABID97_RS24230 at 5008.231 kb on - strand at 5008.305 kb on + strand, within ABID97_RS24235 at 5008.365 kb on + strand, within ABID97_RS24235 at 5008.365 kb on + strand, within ABID97_RS24235 at 5008.365 kb on + strand, within ABID97_RS24235 at 5008.365 kb on + strand, within ABID97_RS24235 at 5008.365 kb on + strand, within ABID97_RS24235 at 5008.365 kb on + strand, within ABID97_RS24235 at 5008.366 kb on - strand, within ABID97_RS24235 at 5008.369 kb on + strand, within ABID97_RS24235 at 5008.369 kb on + strand, within ABID97_RS24235 at 5008.369 kb on + strand, within ABID97_RS24235 at 5008.370 kb on - strand, within ABID97_RS24235 at 5008.370 kb on - strand, within ABID97_RS24235 at 5008.474 kb on - strand, within ABID97_RS24235 at 5008.474 kb on - strand, within ABID97_RS24235 at 5008.746 kb on - strand, within ABID97_RS24235 at 5008.806 kb on + strand, within ABID97_RS24235 at 5008.807 kb on - strand, within ABID97_RS24235 at 5008.807 kb on - strand, within ABID97_RS24235 at 5009.049 kb on - strand, within ABID97_RS24240 at 5009.049 kb on - strand, within ABID97_RS24240 at 5009.125 kb on + strand, within ABID97_RS24240 at 5009.125 kb on + strand, within ABID97_RS24240 at 5009.125 kb on + strand, within ABID97_RS24240 at 5009.125 kb on + strand, within ABID97_RS24240 at 5009.125 kb on + strand, within ABID97_RS24240 at 5009.125 kb on + strand, within ABID97_RS24240 at 5009.182 kb on + strand, within ABID97_RS24240 at 5009.253 kb on - strand, within ABID97_RS24240 at 5009.258 kb on - strand, within ABID97_RS24240 at 5009.496 kb on + strand, within ABID97_RS24240 at 5009.497 kb on - strand, within ABID97_RS24240 at 5009.675 kb on + strand, within ABID97_RS24240 at 5009.675 kb on + strand, within ABID97_RS24240 at 5009.676 kb on - strand, within ABID97_RS24240 at 5009.794 kb on + strand, within ABID97_RS24240 at 5009.794 kb on + strand, within ABID97_RS24240 at 5009.794 kb on + strand, within ABID97_RS24240 at 5009.794 kb on + strand, within ABID97_RS24240 at 5009.795 kb on - strand, within ABID97_RS24240 at 5009.795 kb on - strand, within ABID97_RS24240 at 5009.795 kb on - strand, within ABID97_RS24240 at 5009.969 kb on + strand at 5009.970 kb on - strand at 5009.970 kb on - strand at 5010.012 kb on - strand at 5010.350 kb on + strand, within ABID97_RS24245 at 5010.350 kb on + strand, within ABID97_RS24245 at 5010.350 kb on + strand, within ABID97_RS24245 at 5010.350 kb on + strand, within ABID97_RS24245 at 5010.351 kb on - strand, within ABID97_RS24245 at 5010.407 kb on - strand, within ABID97_RS24245 at 5010.479 kb on + strand, within ABID97_RS24245 at 5010.482 kb on + strand, within ABID97_RS24245 at 5010.483 kb on - strand, within ABID97_RS24245 at 5010.507 kb on - strand, within ABID97_RS24245 at 5010.509 kb on + strand, within ABID97_RS24245 at 5010.510 kb on - strand, within ABID97_RS24245 at 5010.719 kb on - strand at 5010.735 kb on + strand at 5010.796 kb on - strand at 5010.829 kb on + strand at 5010.830 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 5,007,976 + ABID97_RS24230 0.81 +0.7 5,007,977 - ABID97_RS24230 0.81 +1.2 5,008,015 + ABID97_RS24230 0.84 +0.6 5,008,048 + ABID97_RS24230 0.87 +0.5 5,008,049 - ABID97_RS24230 0.87 +0.8 5,008,231 - +0.3 5,008,305 + ABID97_RS24235 0.15 +0.6 5,008,365 + ABID97_RS24235 0.23 +1.3 5,008,365 + ABID97_RS24235 0.23 +0.1 5,008,365 + ABID97_RS24235 0.23 +0.7 5,008,365 + ABID97_RS24235 0.23 +0.1 5,008,365 + ABID97_RS24235 0.23 +0.4 5,008,365 + ABID97_RS24235 0.23 +2.9 5,008,366 - ABID97_RS24235 0.23 +0.2 5,008,369 + ABID97_RS24235 0.23 +0.4 5,008,369 + ABID97_RS24235 0.23 +0.4 5,008,369 + ABID97_RS24235 0.23 +0.4 5,008,370 - ABID97_RS24235 0.23 +0.2 5,008,370 - ABID97_RS24235 0.23 -1.0 5,008,474 - ABID97_RS24235 0.37 +0.4 5,008,474 - ABID97_RS24235 0.37 +0.2 5,008,746 - ABID97_RS24235 0.74 +0.2 5,008,806 + ABID97_RS24235 0.82 +0.1 5,008,807 - ABID97_RS24235 0.82 -0.0 5,008,807 - ABID97_RS24235 0.82 +0.5 5,009,049 - ABID97_RS24240 0.11 +0.4 5,009,049 - ABID97_RS24240 0.11 +0.4 5,009,125 + ABID97_RS24240 0.18 +0.4 5,009,125 + ABID97_RS24240 0.18 -0.8 5,009,125 + ABID97_RS24240 0.18 +0.4 5,009,125 + ABID97_RS24240 0.18 +0.1 5,009,125 + ABID97_RS24240 0.18 +0.6 5,009,125 + ABID97_RS24240 0.18 +0.2 5,009,182 + ABID97_RS24240 0.24 -0.1 5,009,253 - ABID97_RS24240 0.31 +0.2 5,009,258 - ABID97_RS24240 0.31 -0.1 5,009,496 + ABID97_RS24240 0.54 +0.2 5,009,497 - ABID97_RS24240 0.55 +0.5 5,009,675 + ABID97_RS24240 0.72 +0.6 5,009,675 + ABID97_RS24240 0.72 +0.2 5,009,676 - ABID97_RS24240 0.72 +0.6 5,009,794 + ABID97_RS24240 0.84 +0.0 5,009,794 + ABID97_RS24240 0.84 +0.3 5,009,794 + ABID97_RS24240 0.84 +0.0 5,009,794 + ABID97_RS24240 0.84 -0.1 5,009,795 - ABID97_RS24240 0.84 +1.4 5,009,795 - ABID97_RS24240 0.84 +0.6 5,009,795 - ABID97_RS24240 0.84 -1.0 5,009,969 + +0.2 5,009,970 - -0.3 5,009,970 - +2.2 5,010,012 - +1.8 5,010,350 + ABID97_RS24245 0.54 -0.0 5,010,350 + ABID97_RS24245 0.54 +1.1 5,010,350 + ABID97_RS24245 0.54 +0.4 5,010,350 + ABID97_RS24245 0.54 +0.1 5,010,351 - ABID97_RS24245 0.54 -0.6 5,010,407 - ABID97_RS24245 0.62 -0.1 5,010,479 + ABID97_RS24245 0.72 +0.8 5,010,482 + ABID97_RS24245 0.73 -0.5 5,010,483 - ABID97_RS24245 0.73 +0.2 5,010,507 - ABID97_RS24245 0.76 -0.4 5,010,509 + ABID97_RS24245 0.76 +0.2 5,010,510 - ABID97_RS24245 0.77 +1.6 5,010,719 - +0.3 5,010,735 + -0.5 5,010,796 - +0.0 5,010,829 + -0.3 5,010,830 - +0.2
Or see this region's nucleotide sequence