Strain Fitness in Variovorax sp. OAS795 around ABID97_RS22480

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS22475 and ABID97_RS22480 are separated by 19 nucleotidesABID97_RS22480 and ABID97_RS22485 overlap by 4 nucleotides ABID97_RS22475: ABID97_RS22475 - AraC family transcriptional regulator, at 4,654,024 to 4,655,037 _RS22475 ABID97_RS22480: ABID97_RS22480 - hypothetical protein, at 4,655,057 to 4,655,617 _RS22480 ABID97_RS22485: ABID97_RS22485 - PrsW family glutamic-type intramembrane protease, at 4,655,614 to 4,656,804 _RS22485 Position (kb) 4655 4656Strain fitness (log2 ratio) -1 0 1at 4654.709 kb on - strand, within ABID97_RS22475at 4654.861 kb on + strand, within ABID97_RS22475at 4654.861 kb on + strand, within ABID97_RS22475at 4654.861 kb on + strand, within ABID97_RS22475at 4654.862 kb on - strand, within ABID97_RS22475at 4655.079 kb on + strandat 4655.080 kb on - strandat 4655.457 kb on - strand, within ABID97_RS22480at 4655.459 kb on + strand, within ABID97_RS22480at 4655.460 kb on - strand, within ABID97_RS22480at 4655.534 kb on + strand, within ABID97_RS22480at 4655.534 kb on + strand, within ABID97_RS22480at 4655.534 kb on + strand, within ABID97_RS22480at 4655.535 kb on - strand, within ABID97_RS22480at 4655.535 kb on - strand, within ABID97_RS22480at 4655.815 kb on + strand, within ABID97_RS22485at 4655.816 kb on - strand, within ABID97_RS22485at 4655.816 kb on - strand, within ABID97_RS22485at 4656.157 kb on + strand, within ABID97_RS22485at 4656.266 kb on - strand, within ABID97_RS22485at 4656.266 kb on - strand, within ABID97_RS22485at 4656.520 kb on + strand, within ABID97_RS22485at 4656.521 kb on - strand, within ABID97_RS22485at 4656.521 kb on - strand, within ABID97_RS22485at 4656.521 kb on - strand, within ABID97_RS22485

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
4,654,709 - ABID97_RS22475 0.68 -0.1
4,654,861 + ABID97_RS22475 0.83 +0.1
4,654,861 + ABID97_RS22475 0.83 -0.5
4,654,861 + ABID97_RS22475 0.83 -0.6
4,654,862 - ABID97_RS22475 0.83 -0.2
4,655,079 + -0.4
4,655,080 - +0.1
4,655,457 - ABID97_RS22480 0.71 -0.7
4,655,459 + ABID97_RS22480 0.72 -0.7
4,655,460 - ABID97_RS22480 0.72 -0.2
4,655,534 + ABID97_RS22480 0.85 -0.2
4,655,534 + ABID97_RS22480 0.85 -0.6
4,655,534 + ABID97_RS22480 0.85 +0.3
4,655,535 - ABID97_RS22480 0.85 -0.4
4,655,535 - ABID97_RS22480 0.85 -1.1
4,655,815 + ABID97_RS22485 0.17 -0.3
4,655,816 - ABID97_RS22485 0.17 +0.6
4,655,816 - ABID97_RS22485 0.17 +0.1
4,656,157 + ABID97_RS22485 0.46 +0.2
4,656,266 - ABID97_RS22485 0.55 -0.3
4,656,266 - ABID97_RS22485 0.55 +0.0
4,656,520 + ABID97_RS22485 0.76 -0.0
4,656,521 - ABID97_RS22485 0.76 -0.1
4,656,521 - ABID97_RS22485 0.76 -0.0
4,656,521 - ABID97_RS22485 0.76 +0.3

Or see this region's nucleotide sequence