Strain Fitness in Variovorax sp. OAS795 around ABID97_RS17195

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS17190 and ABID97_RS17195 are separated by 11 nucleotidesABID97_RS17195 and ABID97_RS17200 are separated by 61 nucleotides ABID97_RS17190: ABID97_RS17190 - NAD(P)H-hydrate dehydratase, at 3,552,072 to 3,553,526 _RS17190 ABID97_RS17195: ABID97_RS17195 - SDR family oxidoreductase, at 3,553,538 to 3,554,302 _RS17195 ABID97_RS17200: ABID97_RS17200 - ribonuclease R, at 3,554,364 to 3,556,631 _RS17200 Position (kb) 3553 3554 3555Strain fitness (log2 ratio) -3 -2 -1 0 1at 3552.759 kb on - strand, within ABID97_RS17190at 3552.759 kb on - strand, within ABID97_RS17190at 3552.793 kb on - strand, within ABID97_RS17190at 3552.793 kb on - strand, within ABID97_RS17190at 3552.793 kb on - strand, within ABID97_RS17190at 3552.793 kb on - strand, within ABID97_RS17190at 3553.108 kb on + strand, within ABID97_RS17190at 3553.579 kb on + strandat 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.620 kb on + strand, within ABID97_RS17195at 3553.621 kb on - strand, within ABID97_RS17195at 3553.621 kb on - strand, within ABID97_RS17195at 3553.621 kb on - strand, within ABID97_RS17195at 3553.621 kb on - strand, within ABID97_RS17195at 3553.621 kb on - strand, within ABID97_RS17195at 3553.621 kb on - strand, within ABID97_RS17195at 3553.764 kb on + strand, within ABID97_RS17195at 3553.765 kb on - strand, within ABID97_RS17195at 3553.765 kb on - strand, within ABID97_RS17195at 3553.765 kb on - strand, within ABID97_RS17195at 3553.765 kb on - strand, within ABID97_RS17195at 3554.782 kb on + strand, within ABID97_RS17200at 3554.782 kb on + strand, within ABID97_RS17200at 3554.782 kb on + strand, within ABID97_RS17200at 3554.782 kb on + strand, within ABID97_RS17200at 3554.782 kb on + strand, within ABID97_RS17200at 3554.783 kb on - strand, within ABID97_RS17200at 3554.783 kb on - strand, within ABID97_RS17200at 3554.869 kb on + strand, within ABID97_RS17200at 3554.869 kb on + strand, within ABID97_RS17200at 3554.869 kb on + strand, within ABID97_RS17200at 3554.870 kb on - strand, within ABID97_RS17200at 3554.870 kb on - strand, within ABID97_RS17200at 3554.870 kb on - strand, within ABID97_RS17200at 3554.870 kb on - strand, within ABID97_RS17200at 3555.172 kb on + strand, within ABID97_RS17200at 3555.172 kb on + strand, within ABID97_RS17200at 3555.173 kb on - strand, within ABID97_RS17200at 3555.173 kb on - strand, within ABID97_RS17200at 3555.173 kb on - strand, within ABID97_RS17200at 3555.173 kb on - strand, within ABID97_RS17200at 3555.181 kb on + strand, within ABID97_RS17200at 3555.181 kb on + strand, within ABID97_RS17200at 3555.217 kb on + strand, within ABID97_RS17200at 3555.217 kb on + strand, within ABID97_RS17200at 3555.217 kb on + strand, within ABID97_RS17200at 3555.217 kb on + strand, within ABID97_RS17200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
3,552,759 - ABID97_RS17190 0.47 +0.2
3,552,759 - ABID97_RS17190 0.47 +0.3
3,552,793 - ABID97_RS17190 0.50 +0.1
3,552,793 - ABID97_RS17190 0.50 -0.0
3,552,793 - ABID97_RS17190 0.50 -0.3
3,552,793 - ABID97_RS17190 0.50 +0.2
3,553,108 + ABID97_RS17190 0.71 +0.8
3,553,579 + +0.2
3,553,620 + ABID97_RS17195 0.11 -0.5
3,553,620 + ABID97_RS17195 0.11 +0.0
3,553,620 + ABID97_RS17195 0.11 +0.4
3,553,620 + ABID97_RS17195 0.11 -0.2
3,553,620 + ABID97_RS17195 0.11 -0.2
3,553,620 + ABID97_RS17195 0.11 -0.1
3,553,620 + ABID97_RS17195 0.11 -0.6
3,553,620 + ABID97_RS17195 0.11 -0.1
3,553,620 + ABID97_RS17195 0.11 -1.2
3,553,621 - ABID97_RS17195 0.11 +0.2
3,553,621 - ABID97_RS17195 0.11 -0.3
3,553,621 - ABID97_RS17195 0.11 -0.6
3,553,621 - ABID97_RS17195 0.11 +0.1
3,553,621 - ABID97_RS17195 0.11 +0.3
3,553,621 - ABID97_RS17195 0.11 -0.9
3,553,764 + ABID97_RS17195 0.30 -0.5
3,553,765 - ABID97_RS17195 0.30 +1.4
3,553,765 - ABID97_RS17195 0.30 -0.1
3,553,765 - ABID97_RS17195 0.30 +0.5
3,553,765 - ABID97_RS17195 0.30 +0.3
3,554,782 + ABID97_RS17200 0.18 -3.0
3,554,782 + ABID97_RS17200 0.18 -0.4
3,554,782 + ABID97_RS17200 0.18 -1.1
3,554,782 + ABID97_RS17200 0.18 -1.2
3,554,782 + ABID97_RS17200 0.18 -2.2
3,554,783 - ABID97_RS17200 0.18 -0.9
3,554,783 - ABID97_RS17200 0.18 -0.9
3,554,869 + ABID97_RS17200 0.22 -1.4
3,554,869 + ABID97_RS17200 0.22 -1.4
3,554,869 + ABID97_RS17200 0.22 -1.7
3,554,870 - ABID97_RS17200 0.22 -2.0
3,554,870 - ABID97_RS17200 0.22 +0.2
3,554,870 - ABID97_RS17200 0.22 -1.6
3,554,870 - ABID97_RS17200 0.22 -1.2
3,555,172 + ABID97_RS17200 0.36 -1.7
3,555,172 + ABID97_RS17200 0.36 -1.7
3,555,173 - ABID97_RS17200 0.36 -1.9
3,555,173 - ABID97_RS17200 0.36 -0.6
3,555,173 - ABID97_RS17200 0.36 -1.6
3,555,173 - ABID97_RS17200 0.36 -1.1
3,555,181 + ABID97_RS17200 0.36 -1.1
3,555,181 + ABID97_RS17200 0.36 -1.4
3,555,217 + ABID97_RS17200 0.38 -1.4
3,555,217 + ABID97_RS17200 0.38 -2.3
3,555,217 + ABID97_RS17200 0.38 -1.0
3,555,217 + ABID97_RS17200 0.38 -1.7

Or see this region's nucleotide sequence