Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS16565 and ABID97_RS16570 are separated by 134 nucleotides ABID97_RS16570 and ABID97_RS16575 overlap by 1 nucleotides ABID97_RS16575 and ABID97_RS16580 overlap by 4 nucleotides
ABID97_RS16565: ABID97_RS16565 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,426,423 to 3,427,628
_RS16565
ABID97_RS16570: ABID97_RS16570 - hypothetical protein, at 3,427,763 to 3,428,179
_RS16570
ABID97_RS16575: ABID97_RS16575 - DNA polymerase III subunit chi, at 3,428,179 to 3,428,622
_RS16575
ABID97_RS16580: ABID97_RS16580 - leucyl aminopeptidase, at 3,428,619 to 3,430,148
_RS16580
Position (kb)
3428
3429 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3427.216 kb on + strand, within ABID97_RS16565 at 3427.217 kb on - strand, within ABID97_RS16565 at 3427.217 kb on - strand, within ABID97_RS16565 at 3427.653 kb on + strand at 3427.654 kb on - strand at 3427.654 kb on - strand at 3427.752 kb on + strand at 3427.753 kb on - strand at 3427.764 kb on + strand at 3427.764 kb on + strand at 3427.765 kb on - strand at 3428.161 kb on + strand at 3428.161 kb on + strand at 3428.162 kb on - strand at 3428.162 kb on - strand at 3428.726 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 3,427,216 + ABID97_RS16565 0.66 +1.2 3,427,217 - ABID97_RS16565 0.66 +1.0 3,427,217 - ABID97_RS16565 0.66 +0.9 3,427,653 + +0.8 3,427,654 - -0.2 3,427,654 - +0.8 3,427,752 + -0.2 3,427,753 - -0.1 3,427,764 + -0.0 3,427,764 + +2.8 3,427,765 - -0.2 3,428,161 + +0.0 3,428,161 + -0.5 3,428,162 - +0.4 3,428,162 - +0.3 3,428,726 - -0.1
Or see this region's nucleotide sequence