Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16575

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS16565 and ABID97_RS16570 are separated by 134 nucleotidesABID97_RS16570 and ABID97_RS16575 overlap by 1 nucleotidesABID97_RS16575 and ABID97_RS16580 overlap by 4 nucleotides ABID97_RS16565: ABID97_RS16565 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,426,423 to 3,427,628 _RS16565 ABID97_RS16570: ABID97_RS16570 - hypothetical protein, at 3,427,763 to 3,428,179 _RS16570 ABID97_RS16575: ABID97_RS16575 - DNA polymerase III subunit chi, at 3,428,179 to 3,428,622 _RS16575 ABID97_RS16580: ABID97_RS16580 - leucyl aminopeptidase, at 3,428,619 to 3,430,148 _RS16580 Position (kb) 3428 3429Strain fitness (log2 ratio) -1 0 1 2 3at 3427.216 kb on + strand, within ABID97_RS16565at 3427.217 kb on - strand, within ABID97_RS16565at 3427.217 kb on - strand, within ABID97_RS16565at 3427.653 kb on + strandat 3427.654 kb on - strandat 3427.654 kb on - strandat 3427.752 kb on + strandat 3427.753 kb on - strandat 3427.764 kb on + strandat 3427.764 kb on + strandat 3427.765 kb on - strandat 3428.161 kb on + strandat 3428.161 kb on + strandat 3428.162 kb on - strandat 3428.162 kb on - strandat 3428.726 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
3,427,216 + ABID97_RS16565 0.66 +1.2
3,427,217 - ABID97_RS16565 0.66 +1.0
3,427,217 - ABID97_RS16565 0.66 +0.9
3,427,653 + +0.8
3,427,654 - -0.2
3,427,654 - +0.8
3,427,752 + -0.2
3,427,753 - -0.1
3,427,764 + -0.0
3,427,764 + +2.8
3,427,765 - -0.2
3,428,161 + +0.0
3,428,161 + -0.5
3,428,162 - +0.4
3,428,162 - +0.3
3,428,726 - -0.1

Or see this region's nucleotide sequence