Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13330

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13320 and ABID97_RS13325 are separated by 31 nucleotidesABID97_RS13325 and ABID97_RS13330 are separated by 17 nucleotidesABID97_RS13330 and ABID97_RS13335 are separated by 84 nucleotides ABID97_RS13320: ABID97_RS13320 - LysR family transcriptional regulator, at 2,774,149 to 2,775,036 _RS13320 ABID97_RS13325: ABID97_RS13325 - antibiotic biosynthesis monooxygenase, at 2,775,068 to 2,775,385 _RS13325 ABID97_RS13330: ABID97_RS13330 - FMN-binding negative transcriptional regulator, at 2,775,403 to 2,776,035 _RS13330 ABID97_RS13335: ABID97_RS13335 - PLP-dependent aminotransferase family protein, at 2,776,120 to 2,777,598 _RS13335 Position (kb) 2775 2776 2777Strain fitness (log2 ratio) -1 0 1at 2774.448 kb on - strand, within ABID97_RS13320at 2774.726 kb on + strand, within ABID97_RS13320at 2774.736 kb on + strand, within ABID97_RS13320at 2774.737 kb on - strand, within ABID97_RS13320at 2775.009 kb on - strandat 2775.231 kb on + strand, within ABID97_RS13325at 2775.381 kb on + strandat 2775.382 kb on - strandat 2775.382 kb on - strandat 2775.585 kb on - strand, within ABID97_RS13330at 2775.785 kb on + strand, within ABID97_RS13330at 2776.031 kb on + strandat 2776.069 kb on - strandat 2776.300 kb on + strand, within ABID97_RS13335at 2776.562 kb on - strand, within ABID97_RS13335at 2776.600 kb on + strand, within ABID97_RS13335at 2776.649 kb on - strand, within ABID97_RS13335at 2776.900 kb on + strand, within ABID97_RS13335at 2776.901 kb on - strand, within ABID97_RS13335at 2776.901 kb on - strand, within ABID97_RS13335

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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2,774,448 - ABID97_RS13320 0.34 +0.0
2,774,726 + ABID97_RS13320 0.65 +0.5
2,774,736 + ABID97_RS13320 0.66 +0.4
2,774,737 - ABID97_RS13320 0.66 -0.1
2,775,009 - +0.0
2,775,231 + ABID97_RS13325 0.51 -0.1
2,775,381 + -0.7
2,775,382 - -0.1
2,775,382 - -0.1
2,775,585 - ABID97_RS13330 0.29 -1.1
2,775,785 + ABID97_RS13330 0.60 -0.1
2,776,031 + +0.8
2,776,069 - +0.1
2,776,300 + ABID97_RS13335 0.12 -1.0
2,776,562 - ABID97_RS13335 0.30 +0.3
2,776,600 + ABID97_RS13335 0.32 -0.0
2,776,649 - ABID97_RS13335 0.36 +0.3
2,776,900 + ABID97_RS13335 0.53 +1.2
2,776,901 - ABID97_RS13335 0.53 +0.5
2,776,901 - ABID97_RS13335 0.53 -0.3

Or see this region's nucleotide sequence