Strain Fitness in Variovorax sp. OAS795 around ABID97_RS11865

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS11860 and ABID97_RS11865 overlap by 82 nucleotidesABID97_RS11865 and ABID97_RS11870 overlap by 4 nucleotides ABID97_RS11860: ABID97_RS11860 - UDP-glucuronic acid decarboxylase family protein, at 2,449,323 to 2,450,372 _RS11860 ABID97_RS11865: ABID97_RS11865 - beta-xylosidase, at 2,450,291 to 2,451,247 _RS11865 ABID97_RS11870: ABID97_RS11870 - inositol-3-phosphate synthase, at 2,451,244 to 2,452,395 _RS11870 Position (kb) 2450 2451 2452Strain fitness (log2 ratio) -1 0 1at 2449.323 kb on - strandat 2449.548 kb on + strand, within ABID97_RS11860at 2449.696 kb on - strand, within ABID97_RS11860at 2449.863 kb on + strand, within ABID97_RS11860at 2449.947 kb on + strand, within ABID97_RS11860at 2450.742 kb on + strand, within ABID97_RS11865at 2450.746 kb on - strand, within ABID97_RS11865at 2450.880 kb on - strand, within ABID97_RS11865at 2451.573 kb on - strand, within ABID97_RS11870

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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2,449,323 - -0.7
2,449,548 + ABID97_RS11860 0.21 -0.4
2,449,696 - ABID97_RS11860 0.36 -0.8
2,449,863 + ABID97_RS11860 0.51 -0.6
2,449,947 + ABID97_RS11860 0.59 -0.7
2,450,742 + ABID97_RS11865 0.47 +0.2
2,450,746 - ABID97_RS11865 0.48 -0.1
2,450,880 - ABID97_RS11865 0.62 -0.3
2,451,573 - ABID97_RS11870 0.29 -0.2

Or see this region's nucleotide sequence