Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS06825 and ABID97_RS06830 are separated by 155 nucleotides ABID97_RS06830 and ABID97_RS06835 are separated by 54 nucleotides
ABID97_RS06825: ABID97_RS06825 - LysR family transcriptional regulator, at 1,439,530 to 1,440,489
_RS06825
ABID97_RS06830: ABID97_RS06830 - aldehyde dehydrogenase family protein, at 1,440,645 to 1,442,096
_RS06830
ABID97_RS06835: ABID97_RS06835 - ABC transporter substrate-binding protein, at 1,442,151 to 1,443,116
_RS06835
Position (kb)
1440
1441
1442
1443 Strain fitness (log2 ratio)
-1
0
1
2 at 1439.703 kb on - strand, within ABID97_RS06825 at 1440.479 kb on + strand at 1440.479 kb on + strand at 1440.479 kb on + strand at 1440.479 kb on + strand at 1440.479 kb on + strand at 1440.479 kb on + strand at 1440.479 kb on + strand at 1440.480 kb on - strand at 1440.480 kb on - strand at 1440.480 kb on - strand at 1440.599 kb on - strand at 1440.681 kb on + strand at 1440.681 kb on + strand at 1440.762 kb on + strand at 1440.763 kb on - strand at 1441.743 kb on + strand, within ABID97_RS06830 at 1441.743 kb on + strand, within ABID97_RS06830 at 1442.062 kb on - strand at 1442.133 kb on + strand at 1442.134 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 1,439,703 - ABID97_RS06825 0.18 +0.6 1,440,479 + +1.9 1,440,479 + +1.8 1,440,479 + +2.5 1,440,479 + +2.1 1,440,479 + +1.4 1,440,479 + +2.2 1,440,479 + +1.7 1,440,480 - +0.1 1,440,480 - +0.2 1,440,480 - +0.6 1,440,599 - +0.6 1,440,681 + +0.3 1,440,681 + +0.7 1,440,762 + +0.6 1,440,763 - -0.0 1,441,743 + ABID97_RS06830 0.76 +1.2 1,441,743 + ABID97_RS06830 0.76 +1.2 1,442,062 - +1.0 1,442,133 + +0.1 1,442,134 - +0.2
Or see this region's nucleotide sequence