Strain Fitness in Variovorax sp. OAS795 around ABID97_RS04080

Experiment: D-Xylose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS04070 and ABID97_RS04075 are separated by 97 nucleotidesABID97_RS04075 and ABID97_RS04080 overlap by 4 nucleotidesABID97_RS04080 and ABID97_RS04085 are separated by 28 nucleotides ABID97_RS04070: ABID97_RS04070 - aldehyde dehydrogenase family protein, at 834,450 to 835,988 _RS04070 ABID97_RS04075: ABID97_RS04075 - amino acid ABC transporter substrate-binding protein, at 836,086 to 836,988 _RS04075 ABID97_RS04080: ABID97_RS04080 - pyridoxal phosphate-dependent aminotransferase, at 836,985 to 838,229 _RS04080 ABID97_RS04085: ABID97_RS04085 - thiamine pyrophosphate-binding protein, at 838,258 to 839,931 _RS04085 Position (kb) 836 837 838 839Strain fitness (log2 ratio) -1 0 1at 836.242 kb on + strand, within ABID97_RS04075at 836.242 kb on + strand, within ABID97_RS04075at 836.242 kb on + strand, within ABID97_RS04075at 836.242 kb on + strand, within ABID97_RS04075at 836.243 kb on - strand, within ABID97_RS04075at 836.266 kb on + strand, within ABID97_RS04075at 836.266 kb on + strand, within ABID97_RS04075at 836.267 kb on - strand, within ABID97_RS04075at 836.335 kb on + strand, within ABID97_RS04075at 836.336 kb on - strand, within ABID97_RS04075at 836.336 kb on - strand, within ABID97_RS04075at 836.336 kb on - strand, within ABID97_RS04075at 836.458 kb on + strand, within ABID97_RS04075at 836.458 kb on + strand, within ABID97_RS04075at 836.458 kb on + strand, within ABID97_RS04075at 836.459 kb on - strand, within ABID97_RS04075at 836.459 kb on - strand, within ABID97_RS04075at 836.731 kb on + strand, within ABID97_RS04075at 836.863 kb on + strand, within ABID97_RS04075at 836.863 kb on + strand, within ABID97_RS04075at 836.864 kb on - strand, within ABID97_RS04075at 837.216 kb on + strand, within ABID97_RS04080at 837.396 kb on + strand, within ABID97_RS04080at 837.397 kb on - strand, within ABID97_RS04080at 837.408 kb on + strand, within ABID97_RS04080at 837.646 kb on - strand, within ABID97_RS04080at 837.661 kb on - strand, within ABID97_RS04080at 837.999 kb on + strand, within ABID97_RS04080at 837.999 kb on + strand, within ABID97_RS04080at 838.000 kb on - strand, within ABID97_RS04080at 838.000 kb on - strand, within ABID97_RS04080at 838.000 kb on - strand, within ABID97_RS04080at 838.000 kb on - strand, within ABID97_RS04080at 838.001 kb on + strand, within ABID97_RS04080at 838.001 kb on + strand, within ABID97_RS04080at 838.001 kb on + strand, within ABID97_RS04080at 838.001 kb on + strand, within ABID97_RS04080at 838.397 kb on + strandat 838.397 kb on + strandat 838.808 kb on - strand, within ABID97_RS04085at 838.952 kb on - strand, within ABID97_RS04085at 838.999 kb on + strand, within ABID97_RS04085at 839.000 kb on - strand, within ABID97_RS04085at 839.111 kb on - strand, within ABID97_RS04085

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
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836,242 + ABID97_RS04075 0.17 +0.2
836,242 + ABID97_RS04075 0.17 -0.5
836,242 + ABID97_RS04075 0.17 -0.4
836,242 + ABID97_RS04075 0.17 -0.6
836,243 - ABID97_RS04075 0.17 -0.7
836,266 + ABID97_RS04075 0.20 -0.1
836,266 + ABID97_RS04075 0.20 +0.3
836,267 - ABID97_RS04075 0.20 +0.1
836,335 + ABID97_RS04075 0.28 -0.1
836,336 - ABID97_RS04075 0.28 -0.4
836,336 - ABID97_RS04075 0.28 -0.3
836,336 - ABID97_RS04075 0.28 -0.4
836,458 + ABID97_RS04075 0.41 -0.4
836,458 + ABID97_RS04075 0.41 -0.3
836,458 + ABID97_RS04075 0.41 +0.1
836,459 - ABID97_RS04075 0.41 +0.2
836,459 - ABID97_RS04075 0.41 +1.0
836,731 + ABID97_RS04075 0.71 +0.4
836,863 + ABID97_RS04075 0.86 +0.2
836,863 + ABID97_RS04075 0.86 +0.0
836,864 - ABID97_RS04075 0.86 +0.3
837,216 + ABID97_RS04080 0.19 -0.1
837,396 + ABID97_RS04080 0.33 -0.7
837,397 - ABID97_RS04080 0.33 +0.0
837,408 + ABID97_RS04080 0.34 -1.7
837,646 - ABID97_RS04080 0.53 -1.3
837,661 - ABID97_RS04080 0.54 +0.7
837,999 + ABID97_RS04080 0.81 +0.1
837,999 + ABID97_RS04080 0.81 -0.1
838,000 - ABID97_RS04080 0.82 -0.0
838,000 - ABID97_RS04080 0.82 +0.1
838,000 - ABID97_RS04080 0.82 +0.2
838,000 - ABID97_RS04080 0.82 +0.9
838,001 + ABID97_RS04080 0.82 +0.1
838,001 + ABID97_RS04080 0.82 -0.8
838,001 + ABID97_RS04080 0.82 -1.0
838,001 + ABID97_RS04080 0.82 +1.1
838,397 + -0.2
838,397 + -0.6
838,808 - ABID97_RS04085 0.33 -1.5
838,952 - ABID97_RS04085 0.41 -0.4
838,999 + ABID97_RS04085 0.44 +0.0
839,000 - ABID97_RS04085 0.44 +0.4
839,111 - ABID97_RS04085 0.51 -0.3

Or see this region's nucleotide sequence