Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_77

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_76 and PfGW456L13_77 are separated by 111 nucleotidesPfGW456L13_77 and PfGW456L13_78 are separated by 156 nucleotidesPfGW456L13_78 and PfGW456L13_79 overlap by 4 nucleotides PfGW456L13_76 - Outer membrane receptor proteins, mostly Fe transport, at 85,633 to 87,750 _76 PfGW456L13_77 - Uncharacterized iron-regulated membrane protein; Iron-uptake factor PiuB, at 87,862 to 89,241 _77 PfGW456L13_78 - ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component, at 89,398 to 90,186 _78 PfGW456L13_79 - ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component, at 90,183 to 91,142 _79 Position (kb) 87 88 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 86.893 kb on + strand, within PfGW456L13_76at 87.022 kb on + strand, within PfGW456L13_76at 87.023 kb on - strand, within PfGW456L13_76at 87.058 kb on + strand, within PfGW456L13_76at 87.160 kb on + strand, within PfGW456L13_76at 87.160 kb on + strand, within PfGW456L13_76at 87.160 kb on + strand, within PfGW456L13_76at 87.160 kb on + strand, within PfGW456L13_76at 87.160 kb on + strand, within PfGW456L13_76at 87.160 kb on + strand, within PfGW456L13_76at 87.160 kb on + strand, within PfGW456L13_76at 87.161 kb on - strand, within PfGW456L13_76at 87.196 kb on + strand, within PfGW456L13_76at 87.197 kb on - strand, within PfGW456L13_76at 87.197 kb on - strand, within PfGW456L13_76at 87.197 kb on - strand, within PfGW456L13_76at 87.217 kb on + strand, within PfGW456L13_76at 87.217 kb on + strand, within PfGW456L13_76at 87.218 kb on - strand, within PfGW456L13_76at 87.218 kb on - strand, within PfGW456L13_76at 87.218 kb on - strand, within PfGW456L13_76at 87.218 kb on - strand, within PfGW456L13_76at 87.218 kb on - strand, within PfGW456L13_76at 87.233 kb on - strand, within PfGW456L13_76at 87.233 kb on - strand, within PfGW456L13_76at 87.253 kb on - strand, within PfGW456L13_76at 87.313 kb on + strand, within PfGW456L13_76at 87.314 kb on - strand, within PfGW456L13_76at 87.314 kb on - strand, within PfGW456L13_76at 87.355 kb on + strand, within PfGW456L13_76at 87.355 kb on + strand, within PfGW456L13_76at 87.355 kb on + strand, within PfGW456L13_76at 87.356 kb on - strand, within PfGW456L13_76at 87.356 kb on - strand, within PfGW456L13_76at 87.433 kb on + strand, within PfGW456L13_76at 87.434 kb on - strand, within PfGW456L13_76at 87.687 kb on + strandat 87.832 kb on + strandat 87.833 kb on - strandat 87.886 kb on + strandat 87.887 kb on - strandat 87.913 kb on + strandat 87.914 kb on - strandat 87.970 kb on + strandat 87.970 kb on + strandat 87.971 kb on - strandat 88.003 kb on + strand, within PfGW456L13_77at 88.003 kb on + strand, within PfGW456L13_77at 88.003 kb on + strand, within PfGW456L13_77at 88.003 kb on + strand, within PfGW456L13_77at 88.003 kb on + strand, within PfGW456L13_77at 88.003 kb on + strand, within PfGW456L13_77at 88.004 kb on - strand, within PfGW456L13_77at 88.004 kb on - strand, within PfGW456L13_77at 88.082 kb on - strand, within PfGW456L13_77at 88.082 kb on - strand, within PfGW456L13_77at 88.105 kb on + strandat 88.190 kb on - strand, within PfGW456L13_77at 88.409 kb on + strand, within PfGW456L13_77at 88.409 kb on + strand, within PfGW456L13_77at 88.514 kb on - strand, within PfGW456L13_77at 88.514 kb on - strand, within PfGW456L13_77at 88.514 kb on - strand, within PfGW456L13_77at 88.727 kb on + strand, within PfGW456L13_77at 88.728 kb on - strand, within PfGW456L13_77at 88.728 kb on - strand, within PfGW456L13_77at 88.728 kb on - strand, within PfGW456L13_77at 88.728 kb on - strand, within PfGW456L13_77at 88.765 kb on + strand, within PfGW456L13_77at 88.861 kb on + strand, within PfGW456L13_77at 88.861 kb on + strand, within PfGW456L13_77at 88.862 kb on - strand, within PfGW456L13_77at 88.886 kb on + strand, within PfGW456L13_77at 88.886 kb on + strand, within PfGW456L13_77at 88.886 kb on + strand, within PfGW456L13_77at 88.887 kb on - strand, within PfGW456L13_77at 88.982 kb on + strand, within PfGW456L13_77at 88.983 kb on - strand, within PfGW456L13_77at 89.274 kb on + strandat 89.274 kb on + strandat 89.274 kb on + strandat 89.275 kb on - strandat 89.335 kb on + strandat 89.336 kb on - strandat 89.336 kb on - strandat 90.034 kb on + strand, within PfGW456L13_78at 90.034 kb on + strand, within PfGW456L13_78at 90.035 kb on - strand, within PfGW456L13_78at 90.035 kb on - strand, within PfGW456L13_78at 90.055 kb on - strand, within PfGW456L13_78

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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86,893 + PfGW456L13_76 0.59 +2.1
87,022 + PfGW456L13_76 0.66 -0.7
87,023 - PfGW456L13_76 0.66 +1.3
87,058 + PfGW456L13_76 0.67 +0.7
87,160 + PfGW456L13_76 0.72 -0.1
87,160 + PfGW456L13_76 0.72 +1.4
87,160 + PfGW456L13_76 0.72 -0.6
87,160 + PfGW456L13_76 0.72 -0.4
87,160 + PfGW456L13_76 0.72 +1.2
87,160 + PfGW456L13_76 0.72 -0.1
87,160 + PfGW456L13_76 0.72 -0.5
87,161 - PfGW456L13_76 0.72 -1.8
87,196 + PfGW456L13_76 0.74 +0.6
87,197 - PfGW456L13_76 0.74 -0.8
87,197 - PfGW456L13_76 0.74 +1.3
87,197 - PfGW456L13_76 0.74 -0.1
87,217 + PfGW456L13_76 0.75 -0.5
87,217 + PfGW456L13_76 0.75 -1.5
87,218 - PfGW456L13_76 0.75 -0.6
87,218 - PfGW456L13_76 0.75 +1.1
87,218 - PfGW456L13_76 0.75 -1.0
87,218 - PfGW456L13_76 0.75 +1.0
87,218 - PfGW456L13_76 0.75 +0.4
87,233 - PfGW456L13_76 0.76 +0.9
87,233 - PfGW456L13_76 0.76 +0.5
87,253 - PfGW456L13_76 0.76 +1.0
87,313 + PfGW456L13_76 0.79 -1.4
87,314 - PfGW456L13_76 0.79 -2.0
87,314 - PfGW456L13_76 0.79 -0.1
87,355 + PfGW456L13_76 0.81 -2.3
87,355 + PfGW456L13_76 0.81 +1.8
87,355 + PfGW456L13_76 0.81 +0.0
87,356 - PfGW456L13_76 0.81 +0.6
87,356 - PfGW456L13_76 0.81 -0.7
87,433 + PfGW456L13_76 0.85 -0.5
87,434 - PfGW456L13_76 0.85 -2.6
87,687 + +0.3
87,832 + -0.5
87,833 - -0.1
87,886 + +0.3
87,887 - -2.0
87,913 + -0.8
87,914 - -0.5
87,970 + -1.2
87,970 + +2.5
87,971 - +0.6
88,003 + PfGW456L13_77 0.10 +0.3
88,003 + PfGW456L13_77 0.10 +1.5
88,003 + PfGW456L13_77 0.10 +1.6
88,003 + PfGW456L13_77 0.10 +2.6
88,003 + PfGW456L13_77 0.10 +0.6
88,003 + PfGW456L13_77 0.10 +1.2
88,004 - PfGW456L13_77 0.10 -0.8
88,004 - PfGW456L13_77 0.10 +1.0
88,082 - PfGW456L13_77 0.16 +1.6
88,082 - PfGW456L13_77 0.16 -2.0
88,105 + +2.5
88,190 - PfGW456L13_77 0.24 +1.0
88,409 + PfGW456L13_77 0.40 +0.6
88,409 + PfGW456L13_77 0.40 -0.4
88,514 - PfGW456L13_77 0.47 -3.2
88,514 - PfGW456L13_77 0.47 +1.6
88,514 - PfGW456L13_77 0.47 -0.1
88,727 + PfGW456L13_77 0.63 +0.7
88,728 - PfGW456L13_77 0.63 -1.2
88,728 - PfGW456L13_77 0.63 +0.2
88,728 - PfGW456L13_77 0.63 +0.2
88,728 - PfGW456L13_77 0.63 -0.2
88,765 + PfGW456L13_77 0.65 -1.7
88,861 + PfGW456L13_77 0.72 +1.4
88,861 + PfGW456L13_77 0.72 -0.0
88,862 - PfGW456L13_77 0.72 +0.3
88,886 + PfGW456L13_77 0.74 -0.2
88,886 + PfGW456L13_77 0.74 +0.2
88,886 + PfGW456L13_77 0.74 +1.1
88,887 - PfGW456L13_77 0.74 +1.9
88,982 + PfGW456L13_77 0.81 -0.0
88,983 - PfGW456L13_77 0.81 -0.2
89,274 + -1.5
89,274 + -2.8
89,274 + +0.4
89,275 - +0.9
89,335 + -2.6
89,336 - -2.4
89,336 - -1.1
90,034 + PfGW456L13_78 0.81 -1.8
90,034 + PfGW456L13_78 0.81 -0.9
90,035 - PfGW456L13_78 0.81 -0.3
90,035 - PfGW456L13_78 0.81 +0.6
90,055 - PfGW456L13_78 0.83 -0.3

Or see this region's nucleotide sequence