Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4989

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4987 and PfGW456L13_4988 are separated by 122 nucleotidesPfGW456L13_4988 and PfGW456L13_4989 are separated by 40 nucleotidesPfGW456L13_4989 and PfGW456L13_4990 overlap by 27 nucleotides PfGW456L13_4987 - Glutathione peroxidase family protein, at 5,566,109 to 5,566,591 _4987 PfGW456L13_4988 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 5,566,714 to 5,567,199 _4988 PfGW456L13_4989 - hypothetical protein, at 5,567,240 to 5,567,560 _4989 PfGW456L13_4990 - Phosphate acetyltransferase (EC 2.3.1.8), at 5,567,534 to 5,569,654 _4990 Position (kb) 5567 5568Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5566.272 kb on + strand, within PfGW456L13_4987at 5566.272 kb on + strand, within PfGW456L13_4987at 5566.272 kb on + strand, within PfGW456L13_4987at 5566.273 kb on - strand, within PfGW456L13_4987at 5566.335 kb on + strand, within PfGW456L13_4987at 5566.335 kb on + strand, within PfGW456L13_4987at 5566.335 kb on + strand, within PfGW456L13_4987at 5566.336 kb on - strand, within PfGW456L13_4987at 5566.336 kb on - strand, within PfGW456L13_4987at 5566.336 kb on - strand, within PfGW456L13_4987at 5566.447 kb on - strand, within PfGW456L13_4987at 5566.467 kb on + strand, within PfGW456L13_4987at 5566.468 kb on - strand, within PfGW456L13_4987at 5566.541 kb on + strand, within PfGW456L13_4987at 5566.541 kb on + strand, within PfGW456L13_4987at 5566.541 kb on + strand, within PfGW456L13_4987at 5566.542 kb on - strand, within PfGW456L13_4987at 5566.542 kb on - strand, within PfGW456L13_4987at 5566.542 kb on - strand, within PfGW456L13_4987at 5566.570 kb on + strandat 5566.597 kb on - strandat 5566.693 kb on + strandat 5566.693 kb on + strandat 5566.694 kb on - strandat 5566.694 kb on - strandat 5566.988 kb on + strand, within PfGW456L13_4988at 5566.989 kb on - strand, within PfGW456L13_4988at 5566.998 kb on - strand, within PfGW456L13_4988at 5567.099 kb on + strand, within PfGW456L13_4988at 5567.100 kb on - strand, within PfGW456L13_4988at 5567.100 kb on - strand, within PfGW456L13_4988at 5567.160 kb on + strandat 5567.160 kb on + strandat 5567.160 kb on + strandat 5567.160 kb on + strandat 5567.161 kb on - strandat 5567.161 kb on - strandat 5567.162 kb on + strandat 5567.162 kb on + strandat 5567.162 kb on + strandat 5567.162 kb on + strandat 5567.163 kb on - strandat 5567.163 kb on - strandat 5567.163 kb on - strandat 5567.163 kb on - strandat 5567.163 kb on - strandat 5567.163 kb on - strandat 5567.182 kb on - strandat 5567.182 kb on - strandat 5567.431 kb on - strand, within PfGW456L13_4989at 5567.474 kb on - strand, within PfGW456L13_4989at 5567.514 kb on + strand, within PfGW456L13_4989at 5567.514 kb on + strand, within PfGW456L13_4989at 5567.514 kb on + strand, within PfGW456L13_4989at 5567.514 kb on + strand, within PfGW456L13_4989at 5567.514 kb on + strand, within PfGW456L13_4989at 5567.515 kb on - strand, within PfGW456L13_4989at 5567.515 kb on - strand, within PfGW456L13_4989at 5567.515 kb on - strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.516 kb on + strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strandat 5567.517 kb on - strandat 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.517 kb on - strand, within PfGW456L13_4989at 5567.832 kb on - strand, within PfGW456L13_4990at 5567.900 kb on + strand, within PfGW456L13_4990at 5567.900 kb on + strand, within PfGW456L13_4990at 5567.901 kb on - strand, within PfGW456L13_4990at 5568.298 kb on + strand, within PfGW456L13_4990at 5568.299 kb on - strand, within PfGW456L13_4990at 5568.299 kb on - strand, within PfGW456L13_4990at 5568.299 kb on - strand, within PfGW456L13_4990at 5568.502 kb on + strand, within PfGW456L13_4990at 5568.513 kb on - strand, within PfGW456L13_4990

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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5,566,272 + PfGW456L13_4987 0.34 -0.3
5,566,272 + PfGW456L13_4987 0.34 -0.9
5,566,272 + PfGW456L13_4987 0.34 +0.7
5,566,273 - PfGW456L13_4987 0.34 -0.4
5,566,335 + PfGW456L13_4987 0.47 +0.8
5,566,335 + PfGW456L13_4987 0.47 +0.4
5,566,335 + PfGW456L13_4987 0.47 -1.0
5,566,336 - PfGW456L13_4987 0.47 +0.9
5,566,336 - PfGW456L13_4987 0.47 +0.3
5,566,336 - PfGW456L13_4987 0.47 +0.2
5,566,447 - PfGW456L13_4987 0.70 -0.0
5,566,467 + PfGW456L13_4987 0.74 +1.4
5,566,468 - PfGW456L13_4987 0.74 -0.7
5,566,541 + PfGW456L13_4987 0.89 -0.1
5,566,541 + PfGW456L13_4987 0.89 +2.0
5,566,541 + PfGW456L13_4987 0.89 +1.8
5,566,542 - PfGW456L13_4987 0.90 -1.6
5,566,542 - PfGW456L13_4987 0.90 -2.1
5,566,542 - PfGW456L13_4987 0.90 +2.0
5,566,570 + +1.1
5,566,597 - +1.0
5,566,693 + +1.4
5,566,693 + -0.5
5,566,694 - -1.8
5,566,694 - +1.0
5,566,988 + PfGW456L13_4988 0.56 -2.7
5,566,989 - PfGW456L13_4988 0.57 +0.3
5,566,998 - PfGW456L13_4988 0.58 +1.6
5,567,099 + PfGW456L13_4988 0.79 -0.2
5,567,100 - PfGW456L13_4988 0.79 -0.3
5,567,100 - PfGW456L13_4988 0.79 +2.1
5,567,160 + +0.2
5,567,160 + +2.4
5,567,160 + -1.5
5,567,160 + -0.6
5,567,161 - -0.2
5,567,161 - +1.1
5,567,162 + +1.9
5,567,162 + -0.4
5,567,162 + -0.1
5,567,162 + -1.9
5,567,163 - -1.1
5,567,163 - +0.9
5,567,163 - +0.9
5,567,163 - -0.4
5,567,163 - -0.5
5,567,163 - -1.6
5,567,182 - -1.0
5,567,182 - +0.6
5,567,431 - PfGW456L13_4989 0.60 +0.9
5,567,474 - PfGW456L13_4989 0.73 +0.5
5,567,514 + PfGW456L13_4989 0.85 +0.3
5,567,514 + PfGW456L13_4989 0.85 +0.2
5,567,514 + PfGW456L13_4989 0.85 +1.8
5,567,514 + PfGW456L13_4989 0.85 +0.4
5,567,514 + PfGW456L13_4989 0.85 +0.9
5,567,515 - PfGW456L13_4989 0.86 -0.2
5,567,515 - PfGW456L13_4989 0.86 -1.2
5,567,515 - PfGW456L13_4989 0.86 -1.4
5,567,516 + PfGW456L13_4989 0.86 -0.4
5,567,516 + PfGW456L13_4989 0.86 -0.4
5,567,516 + PfGW456L13_4989 0.86 +0.9
5,567,516 + PfGW456L13_4989 0.86 -2.1
5,567,516 + PfGW456L13_4989 0.86 +2.3
5,567,516 + PfGW456L13_4989 0.86 -0.5
5,567,516 + PfGW456L13_4989 0.86 +1.1
5,567,516 + PfGW456L13_4989 0.86 +0.9
5,567,516 + PfGW456L13_4989 0.86 +0.4
5,567,516 + PfGW456L13_4989 0.86 -2.2
5,567,516 + PfGW456L13_4989 0.86 +0.3
5,567,516 + PfGW456L13_4989 0.86 -0.7
5,567,516 + PfGW456L13_4989 0.86 -1.0
5,567,516 + PfGW456L13_4989 0.86 -1.0
5,567,516 + PfGW456L13_4989 0.86 +0.3
5,567,516 + PfGW456L13_4989 0.86 -1.0
5,567,516 + PfGW456L13_4989 0.86 -0.9
5,567,516 + PfGW456L13_4989 0.86 -0.5
5,567,516 + PfGW456L13_4989 0.86 -0.1
5,567,516 + PfGW456L13_4989 0.86 +1.8
5,567,516 + PfGW456L13_4989 0.86 -0.3
5,567,516 + PfGW456L13_4989 0.86 +1.6
5,567,516 + PfGW456L13_4989 0.86 -0.9
5,567,516 + PfGW456L13_4989 0.86 -2.5
5,567,516 + PfGW456L13_4989 0.86 -1.7
5,567,516 + PfGW456L13_4989 0.86 -0.4
5,567,516 + PfGW456L13_4989 0.86 -0.8
5,567,516 + PfGW456L13_4989 0.86 -0.0
5,567,517 - PfGW456L13_4989 0.86 +1.1
5,567,517 - PfGW456L13_4989 0.86 +0.0
5,567,517 - PfGW456L13_4989 0.86 +1.0
5,567,517 - +0.9
5,567,517 - -0.1
5,567,517 - PfGW456L13_4989 0.86 +1.1
5,567,517 - PfGW456L13_4989 0.86 +1.0
5,567,517 - PfGW456L13_4989 0.86 +0.5
5,567,517 - PfGW456L13_4989 0.86 -0.9
5,567,517 - PfGW456L13_4989 0.86 +0.3
5,567,517 - PfGW456L13_4989 0.86 +1.2
5,567,517 - PfGW456L13_4989 0.86 +0.5
5,567,517 - PfGW456L13_4989 0.86 -0.5
5,567,517 - PfGW456L13_4989 0.86 +0.1
5,567,517 - PfGW456L13_4989 0.86 -0.0
5,567,517 - PfGW456L13_4989 0.86 +3.5
5,567,517 - PfGW456L13_4989 0.86 -0.8
5,567,517 - PfGW456L13_4989 0.86 -1.3
5,567,517 - PfGW456L13_4989 0.86 +0.0
5,567,517 - PfGW456L13_4989 0.86 -0.1
5,567,517 - PfGW456L13_4989 0.86 +0.7
5,567,517 - PfGW456L13_4989 0.86 +0.4
5,567,517 - PfGW456L13_4989 0.86 +0.5
5,567,517 - PfGW456L13_4989 0.86 +2.0
5,567,517 - PfGW456L13_4989 0.86 +0.5
5,567,832 - PfGW456L13_4990 0.14 +0.9
5,567,900 + PfGW456L13_4990 0.17 -0.1
5,567,900 + PfGW456L13_4990 0.17 -0.7
5,567,901 - PfGW456L13_4990 0.17 -0.5
5,568,298 + PfGW456L13_4990 0.36 +0.2
5,568,299 - PfGW456L13_4990 0.36 -1.4
5,568,299 - PfGW456L13_4990 0.36 -0.6
5,568,299 - PfGW456L13_4990 0.36 -2.5
5,568,502 + PfGW456L13_4990 0.46 +1.6
5,568,513 - PfGW456L13_4990 0.46 -1.5

Or see this region's nucleotide sequence