Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4414

Experiment: D-Galactose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4413 and PfGW456L13_4414 overlap by 44 nucleotidesPfGW456L13_4414 and PfGW456L13_4415 are separated by 192 nucleotidesPfGW456L13_4415 and PfGW456L13_4416 are separated by 27 nucleotides PfGW456L13_4413 - Potassium uptake protein TrkH, at 4,926,574 to 4,928,028 _4413 PfGW456L13_4414 - Transcriptional regulator, AraC family, at 4,927,985 to 4,929,013 _4414 PfGW456L13_4415 - FIG027190: Putative transmembrane protein, at 4,929,206 to 4,929,517 _4415 PfGW456L13_4416 - Metal-dependent phosphohydrolase, HD subdomain, at 4,929,545 to 4,930,135 _4416 Position (kb) 4927 4928 4929 4930Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4927.138 kb on + strand, within PfGW456L13_4413at 4927.138 kb on + strand, within PfGW456L13_4413at 4927.339 kb on + strand, within PfGW456L13_4413at 4927.339 kb on + strand, within PfGW456L13_4413at 4927.339 kb on + strand, within PfGW456L13_4413at 4927.339 kb on + strand, within PfGW456L13_4413at 4927.339 kb on + strand, within PfGW456L13_4413at 4927.339 kb on + strand, within PfGW456L13_4413at 4927.340 kb on - strand, within PfGW456L13_4413at 4927.340 kb on - strand, within PfGW456L13_4413at 4927.444 kb on + strand, within PfGW456L13_4413at 4927.445 kb on - strand, within PfGW456L13_4413at 4927.445 kb on - strand, within PfGW456L13_4413at 4927.582 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.654 kb on + strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.655 kb on - strand, within PfGW456L13_4413at 4927.677 kb on + strandat 4927.717 kb on + strand, within PfGW456L13_4413at 4927.718 kb on - strand, within PfGW456L13_4413at 4927.718 kb on - strand, within PfGW456L13_4413at 4928.004 kb on + strandat 4928.136 kb on + strand, within PfGW456L13_4414at 4928.136 kb on + strand, within PfGW456L13_4414at 4928.137 kb on - strand, within PfGW456L13_4414at 4928.137 kb on - strand, within PfGW456L13_4414at 4928.137 kb on - strand, within PfGW456L13_4414at 4928.137 kb on - strand, within PfGW456L13_4414at 4928.175 kb on + strand, within PfGW456L13_4414at 4928.227 kb on + strand, within PfGW456L13_4414at 4928.379 kb on + strand, within PfGW456L13_4414at 4928.380 kb on - strand, within PfGW456L13_4414at 4928.476 kb on - strand, within PfGW456L13_4414at 4928.515 kb on + strand, within PfGW456L13_4414at 4928.516 kb on - strand, within PfGW456L13_4414at 4928.516 kb on - strand, within PfGW456L13_4414at 4928.516 kb on - strand, within PfGW456L13_4414at 4928.517 kb on + strand, within PfGW456L13_4414at 4928.517 kb on + strand, within PfGW456L13_4414at 4928.517 kb on + strand, within PfGW456L13_4414at 4928.517 kb on + strand, within PfGW456L13_4414at 4928.518 kb on - strand, within PfGW456L13_4414at 4928.543 kb on - strand, within PfGW456L13_4414at 4928.575 kb on + strand, within PfGW456L13_4414at 4928.576 kb on - strand, within PfGW456L13_4414at 4928.576 kb on - strand, within PfGW456L13_4414at 4928.682 kb on + strand, within PfGW456L13_4414at 4928.739 kb on + strand, within PfGW456L13_4414at 4929.057 kb on + strandat 4929.057 kb on + strandat 4929.058 kb on - strandat 4929.058 kb on - strandat 4929.058 kb on - strandat 4929.076 kb on - strandat 4929.082 kb on - strandat 4929.098 kb on + strandat 4929.099 kb on - strandat 4929.099 kb on - strandat 4929.141 kb on + strandat 4929.141 kb on + strandat 4929.141 kb on + strandat 4929.142 kb on - strandat 4929.151 kb on + strandat 4929.151 kb on + strandat 4929.152 kb on - strandat 4929.152 kb on - strandat 4929.156 kb on + strandat 4929.245 kb on + strand, within PfGW456L13_4415at 4929.245 kb on + strand, within PfGW456L13_4415at 4929.251 kb on + strand, within PfGW456L13_4415at 4929.252 kb on - strand, within PfGW456L13_4415at 4929.254 kb on + strand, within PfGW456L13_4415at 4929.254 kb on + strand, within PfGW456L13_4415at 4929.254 kb on + strand, within PfGW456L13_4415at 4929.254 kb on + strand, within PfGW456L13_4415at 4929.255 kb on - strand, within PfGW456L13_4415at 4929.291 kb on + strand, within PfGW456L13_4415at 4929.292 kb on - strand, within PfGW456L13_4415at 4929.316 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.455 kb on + strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.456 kb on - strand, within PfGW456L13_4415at 4929.482 kb on + strand, within PfGW456L13_4415at 4929.515 kb on + strandat 4929.515 kb on + strandat 4929.516 kb on - strandat 4929.627 kb on - strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.764 kb on + strand, within PfGW456L13_4416at 4929.765 kb on - strand, within PfGW456L13_4416at 4929.765 kb on - strand, within PfGW456L13_4416at 4929.765 kb on - strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.812 kb on + strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.813 kb on - strand, within PfGW456L13_4416at 4929.906 kb on - strand, within PfGW456L13_4416at 4929.906 kb on - strand, within PfGW456L13_4416at 4929.906 kb on - strand, within PfGW456L13_4416at 4929.908 kb on + strand, within PfGW456L13_4416at 4929.908 kb on + strand, within PfGW456L13_4416at 4929.908 kb on + strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4929.909 kb on - strand, within PfGW456L13_4416at 4930.001 kb on + strand, within PfGW456L13_4416at 4930.001 kb on + strand, within PfGW456L13_4416at 4930.001 kb on + strand, within PfGW456L13_4416at 4930.002 kb on - strand, within PfGW456L13_4416at 4930.002 kb on - strand, within PfGW456L13_4416at 4930.002 kb on - strand, within PfGW456L13_4416

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
remove
4,927,138 + PfGW456L13_4413 0.39 -1.6
4,927,138 + PfGW456L13_4413 0.39 +3.1
4,927,339 + PfGW456L13_4413 0.53 +0.9
4,927,339 + PfGW456L13_4413 0.53 -0.9
4,927,339 + PfGW456L13_4413 0.53 +3.9
4,927,339 + PfGW456L13_4413 0.53 +0.0
4,927,339 + PfGW456L13_4413 0.53 -0.2
4,927,339 + PfGW456L13_4413 0.53 +0.7
4,927,340 - PfGW456L13_4413 0.53 +1.3
4,927,340 - PfGW456L13_4413 0.53 -0.7
4,927,444 + PfGW456L13_4413 0.60 +2.6
4,927,445 - PfGW456L13_4413 0.60 -2.1
4,927,445 - PfGW456L13_4413 0.60 -0.4
4,927,582 + PfGW456L13_4413 0.69 -1.2
4,927,654 + PfGW456L13_4413 0.74 -1.2
4,927,654 + PfGW456L13_4413 0.74 -1.0
4,927,654 + PfGW456L13_4413 0.74 -1.2
4,927,654 + PfGW456L13_4413 0.74 +0.2
4,927,654 + PfGW456L13_4413 0.74 -0.2
4,927,654 + PfGW456L13_4413 0.74 -0.8
4,927,654 + PfGW456L13_4413 0.74 +1.4
4,927,655 - PfGW456L13_4413 0.74 -1.8
4,927,655 - PfGW456L13_4413 0.74 +0.4
4,927,655 - PfGW456L13_4413 0.74 -2.2
4,927,655 - PfGW456L13_4413 0.74 -0.1
4,927,655 - PfGW456L13_4413 0.74 -1.3
4,927,655 - PfGW456L13_4413 0.74 +0.8
4,927,655 - PfGW456L13_4413 0.74 +0.6
4,927,655 - PfGW456L13_4413 0.74 -0.8
4,927,655 - PfGW456L13_4413 0.74 -0.1
4,927,677 + +1.6
4,927,717 + PfGW456L13_4413 0.79 +1.1
4,927,718 - PfGW456L13_4413 0.79 +1.0
4,927,718 - PfGW456L13_4413 0.79 +0.0
4,928,004 + +1.7
4,928,136 + PfGW456L13_4414 0.15 +0.2
4,928,136 + PfGW456L13_4414 0.15 +0.9
4,928,137 - PfGW456L13_4414 0.15 -0.4
4,928,137 - PfGW456L13_4414 0.15 +0.2
4,928,137 - PfGW456L13_4414 0.15 -0.1
4,928,137 - PfGW456L13_4414 0.15 +0.9
4,928,175 + PfGW456L13_4414 0.18 -0.8
4,928,227 + PfGW456L13_4414 0.24 -1.6
4,928,379 + PfGW456L13_4414 0.38 -0.9
4,928,380 - PfGW456L13_4414 0.38 -1.3
4,928,476 - PfGW456L13_4414 0.48 -2.0
4,928,515 + PfGW456L13_4414 0.52 +0.4
4,928,516 - PfGW456L13_4414 0.52 -2.3
4,928,516 - PfGW456L13_4414 0.52 -1.2
4,928,516 - PfGW456L13_4414 0.52 +0.3
4,928,517 + PfGW456L13_4414 0.52 +0.6
4,928,517 + PfGW456L13_4414 0.52 -0.3
4,928,517 + PfGW456L13_4414 0.52 +0.3
4,928,517 + PfGW456L13_4414 0.52 -0.7
4,928,518 - PfGW456L13_4414 0.52 +0.1
4,928,543 - PfGW456L13_4414 0.54 +0.4
4,928,575 + PfGW456L13_4414 0.57 -0.0
4,928,576 - PfGW456L13_4414 0.57 -0.6
4,928,576 - PfGW456L13_4414 0.57 -0.2
4,928,682 + PfGW456L13_4414 0.68 -0.1
4,928,739 + PfGW456L13_4414 0.73 -1.3
4,929,057 + -1.3
4,929,057 + -1.0
4,929,058 - -0.3
4,929,058 - +0.4
4,929,058 - -0.2
4,929,076 - -0.8
4,929,082 - +2.8
4,929,098 + -0.2
4,929,099 - -0.2
4,929,099 - -0.4
4,929,141 + -0.7
4,929,141 + -0.8
4,929,141 + +2.5
4,929,142 - -0.7
4,929,151 + -2.2
4,929,151 + -0.7
4,929,152 - -0.2
4,929,152 - +2.1
4,929,156 + -2.6
4,929,245 + PfGW456L13_4415 0.12 -0.4
4,929,245 + PfGW456L13_4415 0.12 +1.3
4,929,251 + PfGW456L13_4415 0.14 +1.2
4,929,252 - PfGW456L13_4415 0.15 -1.0
4,929,254 + PfGW456L13_4415 0.15 +0.6
4,929,254 + PfGW456L13_4415 0.15 +1.8
4,929,254 + PfGW456L13_4415 0.15 +1.8
4,929,254 + PfGW456L13_4415 0.15 +1.3
4,929,255 - PfGW456L13_4415 0.16 -0.9
4,929,291 + PfGW456L13_4415 0.27 +0.0
4,929,292 - PfGW456L13_4415 0.28 +0.7
4,929,316 + PfGW456L13_4415 0.35 -0.2
4,929,455 + PfGW456L13_4415 0.80 +0.9
4,929,455 + PfGW456L13_4415 0.80 +1.0
4,929,455 + PfGW456L13_4415 0.80 -1.4
4,929,455 + PfGW456L13_4415 0.80 -0.7
4,929,455 + PfGW456L13_4415 0.80 -1.4
4,929,455 + PfGW456L13_4415 0.80 -0.3
4,929,456 - PfGW456L13_4415 0.80 +0.4
4,929,456 - PfGW456L13_4415 0.80 -1.2
4,929,456 - PfGW456L13_4415 0.80 +0.1
4,929,456 - PfGW456L13_4415 0.80 +1.2
4,929,456 - PfGW456L13_4415 0.80 -1.0
4,929,456 - PfGW456L13_4415 0.80 -2.7
4,929,456 - PfGW456L13_4415 0.80 +0.6
4,929,456 - PfGW456L13_4415 0.80 -0.2
4,929,456 - PfGW456L13_4415 0.80 +0.4
4,929,456 - PfGW456L13_4415 0.80 +0.8
4,929,456 - PfGW456L13_4415 0.80 +0.4
4,929,456 - PfGW456L13_4415 0.80 +0.6
4,929,456 - PfGW456L13_4415 0.80 +2.2
4,929,482 + PfGW456L13_4415 0.88 +0.3
4,929,515 + +1.0
4,929,515 + -0.6
4,929,516 - -0.4
4,929,627 - PfGW456L13_4416 0.14 -0.6
4,929,764 + PfGW456L13_4416 0.37 -1.0
4,929,764 + PfGW456L13_4416 0.37 -0.5
4,929,764 + PfGW456L13_4416 0.37 +0.6
4,929,764 + PfGW456L13_4416 0.37 -2.1
4,929,764 + PfGW456L13_4416 0.37 +1.8
4,929,764 + PfGW456L13_4416 0.37 -1.8
4,929,764 + PfGW456L13_4416 0.37 +0.7
4,929,764 + PfGW456L13_4416 0.37 -1.8
4,929,764 + PfGW456L13_4416 0.37 +1.4
4,929,764 + PfGW456L13_4416 0.37 -0.2
4,929,764 + PfGW456L13_4416 0.37 -2.7
4,929,764 + PfGW456L13_4416 0.37 +0.8
4,929,765 - PfGW456L13_4416 0.37 +0.1
4,929,765 - PfGW456L13_4416 0.37 +0.5
4,929,765 - PfGW456L13_4416 0.37 +1.0
4,929,812 + PfGW456L13_4416 0.45 +0.9
4,929,812 + PfGW456L13_4416 0.45 +0.8
4,929,812 + PfGW456L13_4416 0.45 +2.0
4,929,812 + PfGW456L13_4416 0.45 -1.1
4,929,812 + PfGW456L13_4416 0.45 -1.9
4,929,813 - PfGW456L13_4416 0.45 +0.2
4,929,813 - PfGW456L13_4416 0.45 -1.2
4,929,813 - PfGW456L13_4416 0.45 -0.0
4,929,813 - PfGW456L13_4416 0.45 +0.1
4,929,813 - PfGW456L13_4416 0.45 +0.2
4,929,813 - PfGW456L13_4416 0.45 +1.1
4,929,906 - PfGW456L13_4416 0.61 +0.7
4,929,906 - PfGW456L13_4416 0.61 -0.6
4,929,906 - PfGW456L13_4416 0.61 +0.0
4,929,908 + PfGW456L13_4416 0.61 -0.8
4,929,908 + PfGW456L13_4416 0.61 -3.0
4,929,908 + PfGW456L13_4416 0.61 -1.0
4,929,909 - PfGW456L13_4416 0.62 -1.4
4,929,909 - PfGW456L13_4416 0.62 -0.4
4,929,909 - PfGW456L13_4416 0.62 -0.5
4,929,909 - PfGW456L13_4416 0.62 -2.4
4,929,909 - PfGW456L13_4416 0.62 -0.0
4,929,909 - PfGW456L13_4416 0.62 +1.9
4,929,909 - PfGW456L13_4416 0.62 +0.1
4,929,909 - PfGW456L13_4416 0.62 -0.0
4,929,909 - PfGW456L13_4416 0.62 -3.0
4,929,909 - PfGW456L13_4416 0.62 +0.1
4,929,909 - PfGW456L13_4416 0.62 +0.9
4,929,909 - PfGW456L13_4416 0.62 +0.6
4,929,909 - PfGW456L13_4416 0.62 -0.1
4,930,001 + PfGW456L13_4416 0.77 -1.9
4,930,001 + PfGW456L13_4416 0.77 -1.1
4,930,001 + PfGW456L13_4416 0.77 +0.9
4,930,002 - PfGW456L13_4416 0.77 -3.1
4,930,002 - PfGW456L13_4416 0.77 +0.7
4,930,002 - PfGW456L13_4416 0.77 +0.3

Or see this region's nucleotide sequence