Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4404

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4402 and PfGW456L13_4403 are separated by 11 nucleotidesPfGW456L13_4403 and PfGW456L13_4404 are separated by 0 nucleotidesPfGW456L13_4404 and PfGW456L13_4405 are separated by 13 nucleotidesPfGW456L13_4405 and PfGW456L13_4406 are separated by 87 nucleotides PfGW456L13_4402 - Segregation and condensation protein B, at 4,918,122 to 4,919,093 _4402 PfGW456L13_4403 - Segregation and condensation protein A, at 4,919,105 to 4,919,923 _4403 PfGW456L13_4404 - Hypothetical YciO protein, TsaC/YrdC paralog, at 4,919,924 to 4,920,553 _4404 PfGW456L13_4405 - COG0613, Predicted metal-dependent phosphoesterases (PHP family), at 4,920,567 to 4,921,430 _4405 PfGW456L13_4406 - Intracellular septation protein IspA, at 4,921,518 to 4,922,114 _4406 Position (kb) 4919 4920 4921Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4919.517 kb on + strand, within PfGW456L13_4403at 4919.517 kb on + strand, within PfGW456L13_4403at 4919.682 kb on + strand, within PfGW456L13_4403at 4919.683 kb on - strand, within PfGW456L13_4403at 4919.683 kb on - strand, within PfGW456L13_4403at 4919.691 kb on + strand, within PfGW456L13_4403at 4919.691 kb on + strand, within PfGW456L13_4403at 4919.691 kb on + strand, within PfGW456L13_4403at 4919.754 kb on + strand, within PfGW456L13_4403at 4919.755 kb on - strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.820 kb on + strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.821 kb on - strand, within PfGW456L13_4403at 4919.856 kb on + strandat 4919.856 kb on + strandat 4919.856 kb on + strandat 4919.857 kb on - strandat 4919.857 kb on - strandat 4919.857 kb on - strandat 4919.857 kb on - strandat 4919.912 kb on + strandat 4919.912 kb on + strandat 4919.912 kb on + strandat 4919.913 kb on - strandat 4919.925 kb on + strandat 4919.925 kb on + strandat 4919.925 kb on + strandat 4919.925 kb on + strandat 4919.925 kb on + strandat 4919.925 kb on + strandat 4919.925 kb on + strandat 4919.925 kb on + strandat 4919.925 kb on + strandat 4919.926 kb on - strandat 4920.125 kb on + strand, within PfGW456L13_4404at 4920.262 kb on + strand, within PfGW456L13_4404at 4920.262 kb on + strand, within PfGW456L13_4404at 4920.262 kb on + strand, within PfGW456L13_4404at 4920.262 kb on + strand, within PfGW456L13_4404at 4920.262 kb on + strand, within PfGW456L13_4404at 4920.262 kb on + strand, within PfGW456L13_4404at 4920.263 kb on - strand, within PfGW456L13_4404at 4920.263 kb on - strandat 4920.263 kb on - strand, within PfGW456L13_4404at 4920.263 kb on - strand, within PfGW456L13_4404at 4920.263 kb on - strand, within PfGW456L13_4404at 4920.265 kb on - strand, within PfGW456L13_4404at 4920.265 kb on - strand, within PfGW456L13_4404at 4920.265 kb on - strand, within PfGW456L13_4404at 4920.265 kb on - strand, within PfGW456L13_4404at 4920.410 kb on + strand, within PfGW456L13_4404at 4920.411 kb on - strand, within PfGW456L13_4404at 4920.434 kb on + strand, within PfGW456L13_4404at 4920.434 kb on + strand, within PfGW456L13_4404at 4920.434 kb on + strand, within PfGW456L13_4404at 4920.434 kb on + strand, within PfGW456L13_4404at 4920.434 kb on + strand, within PfGW456L13_4404at 4920.434 kb on + strand, within PfGW456L13_4404at 4920.434 kb on + strand, within PfGW456L13_4404at 4920.434 kb on + strand, within PfGW456L13_4404at 4920.434 kb on + strand, within PfGW456L13_4404at 4920.435 kb on - strand, within PfGW456L13_4404at 4920.435 kb on - strand, within PfGW456L13_4404at 4920.435 kb on - strand, within PfGW456L13_4404at 4920.441 kb on + strand, within PfGW456L13_4404at 4920.441 kb on + strand, within PfGW456L13_4404at 4920.441 kb on + strand, within PfGW456L13_4404at 4920.442 kb on - strand, within PfGW456L13_4404at 4920.459 kb on + strand, within PfGW456L13_4404at 4920.560 kb on + strandat 4920.560 kb on + strandat 4920.561 kb on - strandat 4920.581 kb on + strandat 4920.581 kb on + strandat 4920.581 kb on + strandat 4920.581 kb on + strandat 4920.582 kb on - strandat 4920.582 kb on - strandat 4920.609 kb on + strandat 4920.755 kb on - strand, within PfGW456L13_4405at 4920.794 kb on + strand, within PfGW456L13_4405at 4920.794 kb on + strand, within PfGW456L13_4405at 4920.794 kb on + strand, within PfGW456L13_4405at 4920.795 kb on - strand, within PfGW456L13_4405at 4920.795 kb on - strand, within PfGW456L13_4405at 4920.795 kb on - strand, within PfGW456L13_4405at 4920.795 kb on - strand, within PfGW456L13_4405at 4920.796 kb on + strand, within PfGW456L13_4405at 4920.797 kb on - strand, within PfGW456L13_4405at 4920.797 kb on - strand, within PfGW456L13_4405at 4920.797 kb on - strand, within PfGW456L13_4405at 4920.797 kb on - strand, within PfGW456L13_4405at 4920.797 kb on - strand, within PfGW456L13_4405at 4920.797 kb on - strand, within PfGW456L13_4405at 4920.839 kb on - strand, within PfGW456L13_4405at 4921.209 kb on - strand, within PfGW456L13_4405at 4921.209 kb on - strandat 4921.209 kb on - strand, within PfGW456L13_4405at 4921.406 kb on + strandat 4921.441 kb on - strandat 4921.441 kb on - strandat 4921.441 kb on - strandat 4921.450 kb on + strandat 4921.451 kb on - strandat 4921.451 kb on - strandat 4921.474 kb on + strandat 4921.474 kb on + strandat 4921.475 kb on - strandat 4921.475 kb on - strandat 4921.475 kb on - strandat 4921.483 kb on + strandat 4921.483 kb on + strandat 4921.484 kb on - strandat 4921.484 kb on - strandat 4921.484 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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4,919,517 + PfGW456L13_4403 0.50 -1.4
4,919,517 + PfGW456L13_4403 0.50 -1.7
4,919,682 + PfGW456L13_4403 0.70 +0.4
4,919,683 - PfGW456L13_4403 0.71 -1.3
4,919,683 - PfGW456L13_4403 0.71 +0.2
4,919,691 + PfGW456L13_4403 0.72 +0.4
4,919,691 + PfGW456L13_4403 0.72 +0.3
4,919,691 + PfGW456L13_4403 0.72 -0.4
4,919,754 + PfGW456L13_4403 0.79 -0.1
4,919,755 - PfGW456L13_4403 0.79 -2.8
4,919,820 + PfGW456L13_4403 0.87 +1.8
4,919,820 + PfGW456L13_4403 0.87 -0.9
4,919,820 + PfGW456L13_4403 0.87 -0.8
4,919,820 + PfGW456L13_4403 0.87 +0.1
4,919,820 + PfGW456L13_4403 0.87 -2.4
4,919,820 + PfGW456L13_4403 0.87 -0.2
4,919,820 + PfGW456L13_4403 0.87 +1.3
4,919,820 + PfGW456L13_4403 0.87 +1.4
4,919,820 + PfGW456L13_4403 0.87 -2.7
4,919,820 + PfGW456L13_4403 0.87 -1.2
4,919,820 + PfGW456L13_4403 0.87 -1.2
4,919,820 + PfGW456L13_4403 0.87 -1.4
4,919,820 + PfGW456L13_4403 0.87 +1.9
4,919,820 + PfGW456L13_4403 0.87 -0.6
4,919,821 - PfGW456L13_4403 0.87 +0.1
4,919,821 - PfGW456L13_4403 0.87 +0.6
4,919,821 - PfGW456L13_4403 0.87 -0.2
4,919,821 - PfGW456L13_4403 0.87 +0.6
4,919,821 - PfGW456L13_4403 0.87 +1.0
4,919,821 - PfGW456L13_4403 0.87 -0.3
4,919,821 - PfGW456L13_4403 0.87 +1.7
4,919,821 - PfGW456L13_4403 0.87 -0.1
4,919,821 - PfGW456L13_4403 0.87 -0.9
4,919,821 - PfGW456L13_4403 0.87 +0.9
4,919,821 - PfGW456L13_4403 0.87 -0.2
4,919,821 - PfGW456L13_4403 0.87 +1.5
4,919,821 - PfGW456L13_4403 0.87 -0.0
4,919,821 - PfGW456L13_4403 0.87 -1.0
4,919,821 - PfGW456L13_4403 0.87 +0.6
4,919,821 - PfGW456L13_4403 0.87 +1.3
4,919,821 - PfGW456L13_4403 0.87 +0.8
4,919,856 + -0.8
4,919,856 + +0.3
4,919,856 + +0.6
4,919,857 - -0.5
4,919,857 - +1.3
4,919,857 - -2.9
4,919,857 - -0.9
4,919,912 + -0.4
4,919,912 + -0.0
4,919,912 + +0.9
4,919,913 - -0.3
4,919,925 + -0.4
4,919,925 + +0.4
4,919,925 + +1.0
4,919,925 + -0.3
4,919,925 + -1.2
4,919,925 + +0.2
4,919,925 + -1.6
4,919,925 + +0.4
4,919,925 + -1.7
4,919,926 - -0.8
4,920,125 + PfGW456L13_4404 0.32 +1.2
4,920,262 + PfGW456L13_4404 0.54 -1.6
4,920,262 + PfGW456L13_4404 0.54 -0.1
4,920,262 + PfGW456L13_4404 0.54 -2.0
4,920,262 + PfGW456L13_4404 0.54 +0.1
4,920,262 + PfGW456L13_4404 0.54 +1.2
4,920,262 + PfGW456L13_4404 0.54 +1.2
4,920,263 - PfGW456L13_4404 0.54 -0.0
4,920,263 - +0.6
4,920,263 - PfGW456L13_4404 0.54 +1.1
4,920,263 - PfGW456L13_4404 0.54 -0.7
4,920,263 - PfGW456L13_4404 0.54 +0.7
4,920,265 - PfGW456L13_4404 0.54 +0.2
4,920,265 - PfGW456L13_4404 0.54 +0.7
4,920,265 - PfGW456L13_4404 0.54 -0.3
4,920,265 - PfGW456L13_4404 0.54 -0.0
4,920,410 + PfGW456L13_4404 0.77 +0.2
4,920,411 - PfGW456L13_4404 0.77 -1.3
4,920,434 + PfGW456L13_4404 0.81 -1.9
4,920,434 + PfGW456L13_4404 0.81 -1.7
4,920,434 + PfGW456L13_4404 0.81 -1.2
4,920,434 + PfGW456L13_4404 0.81 -0.9
4,920,434 + PfGW456L13_4404 0.81 -1.4
4,920,434 + PfGW456L13_4404 0.81 +0.6
4,920,434 + PfGW456L13_4404 0.81 -0.9
4,920,434 + PfGW456L13_4404 0.81 -0.3
4,920,434 + PfGW456L13_4404 0.81 +1.1
4,920,435 - PfGW456L13_4404 0.81 -1.8
4,920,435 - PfGW456L13_4404 0.81 -1.3
4,920,435 - PfGW456L13_4404 0.81 -0.9
4,920,441 + PfGW456L13_4404 0.82 +1.3
4,920,441 + PfGW456L13_4404 0.82 -1.8
4,920,441 + PfGW456L13_4404 0.82 -1.4
4,920,442 - PfGW456L13_4404 0.82 -0.4
4,920,459 + PfGW456L13_4404 0.85 -0.9
4,920,560 + +0.1
4,920,560 + +0.1
4,920,561 - +0.6
4,920,581 + -0.4
4,920,581 + +0.2
4,920,581 + -1.4
4,920,581 + -0.1
4,920,582 - -0.6
4,920,582 - +0.9
4,920,609 + +1.9
4,920,755 - PfGW456L13_4405 0.22 -0.8
4,920,794 + PfGW456L13_4405 0.26 +1.1
4,920,794 + PfGW456L13_4405 0.26 +1.5
4,920,794 + PfGW456L13_4405 0.26 -0.2
4,920,795 - PfGW456L13_4405 0.26 +1.0
4,920,795 - PfGW456L13_4405 0.26 +0.1
4,920,795 - PfGW456L13_4405 0.26 +0.8
4,920,795 - PfGW456L13_4405 0.26 -0.9
4,920,796 + PfGW456L13_4405 0.27 +0.2
4,920,797 - PfGW456L13_4405 0.27 -2.8
4,920,797 - PfGW456L13_4405 0.27 +0.8
4,920,797 - PfGW456L13_4405 0.27 +0.7
4,920,797 - PfGW456L13_4405 0.27 +1.4
4,920,797 - PfGW456L13_4405 0.27 +0.4
4,920,797 - PfGW456L13_4405 0.27 +0.7
4,920,839 - PfGW456L13_4405 0.31 -0.9
4,921,209 - PfGW456L13_4405 0.74 -0.7
4,921,209 - -0.2
4,921,209 - PfGW456L13_4405 0.74 -0.9
4,921,406 + +1.6
4,921,441 - -0.9
4,921,441 - +0.2
4,921,441 - -1.5
4,921,450 + +0.2
4,921,451 - -1.8
4,921,451 - -0.9
4,921,474 + +1.9
4,921,474 + +1.0
4,921,475 - -2.3
4,921,475 - -0.3
4,921,475 - -0.7
4,921,483 + +0.3
4,921,483 + +0.8
4,921,484 - -1.3
4,921,484 - -1.4
4,921,484 - -1.4

Or see this region's nucleotide sequence