Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3820

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3819 and PfGW456L13_3820 overlap by 27 nucleotidesPfGW456L13_3820 and PfGW456L13_3821 overlap by 17 nucleotides PfGW456L13_3819 - Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10), at 4,286,560 to 4,287,924 _3819 PfGW456L13_3820 - hypothetical protein, at 4,287,898 to 4,288,209 _3820 PfGW456L13_3821 - benABC operon transcriptional activator BenR, at 4,288,193 to 4,289,152 _3821 Position (kb) 4287 4288 4289Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4286.918 kb on + strand, within PfGW456L13_3819at 4286.918 kb on + strand, within PfGW456L13_3819at 4286.918 kb on + strand, within PfGW456L13_3819at 4286.918 kb on + strand, within PfGW456L13_3819at 4286.918 kb on + strand, within PfGW456L13_3819at 4286.919 kb on - strand, within PfGW456L13_3819at 4286.919 kb on - strand, within PfGW456L13_3819at 4286.919 kb on - strand, within PfGW456L13_3819at 4286.993 kb on + strand, within PfGW456L13_3819at 4286.993 kb on + strand, within PfGW456L13_3819at 4286.994 kb on - strand, within PfGW456L13_3819at 4286.994 kb on - strand, within PfGW456L13_3819at 4287.005 kb on + strand, within PfGW456L13_3819at 4287.089 kb on + strand, within PfGW456L13_3819at 4287.090 kb on - strand, within PfGW456L13_3819at 4287.090 kb on - strand, within PfGW456L13_3819at 4287.155 kb on + strand, within PfGW456L13_3819at 4287.155 kb on + strand, within PfGW456L13_3819at 4287.155 kb on + strand, within PfGW456L13_3819at 4287.251 kb on + strand, within PfGW456L13_3819at 4287.251 kb on + strand, within PfGW456L13_3819at 4287.252 kb on - strand, within PfGW456L13_3819at 4287.323 kb on + strand, within PfGW456L13_3819at 4287.323 kb on + strand, within PfGW456L13_3819at 4287.323 kb on + strand, within PfGW456L13_3819at 4287.324 kb on - strand, within PfGW456L13_3819at 4287.324 kb on - strand, within PfGW456L13_3819at 4287.324 kb on - strand, within PfGW456L13_3819at 4287.324 kb on - strand, within PfGW456L13_3819at 4287.329 kb on + strand, within PfGW456L13_3819at 4287.329 kb on + strand, within PfGW456L13_3819at 4287.329 kb on + strand, within PfGW456L13_3819at 4287.329 kb on + strand, within PfGW456L13_3819at 4287.329 kb on + strand, within PfGW456L13_3819at 4287.329 kb on + strand, within PfGW456L13_3819at 4287.330 kb on - strand, within PfGW456L13_3819at 4287.330 kb on - strand, within PfGW456L13_3819at 4287.330 kb on - strand, within PfGW456L13_3819at 4287.330 kb on - strand, within PfGW456L13_3819at 4287.330 kb on - strand, within PfGW456L13_3819at 4287.330 kb on - strand, within PfGW456L13_3819at 4287.608 kb on + strand, within PfGW456L13_3819at 4287.608 kb on + strand, within PfGW456L13_3819at 4287.608 kb on + strand, within PfGW456L13_3819at 4287.609 kb on - strand, within PfGW456L13_3819at 4287.609 kb on - strand, within PfGW456L13_3819at 4287.609 kb on - strand, within PfGW456L13_3819at 4287.609 kb on - strand, within PfGW456L13_3819at 4287.740 kb on + strand, within PfGW456L13_3819at 4287.740 kb on + strand, within PfGW456L13_3819at 4287.741 kb on - strand, within PfGW456L13_3819at 4287.782 kb on + strand, within PfGW456L13_3819at 4287.783 kb on - strand, within PfGW456L13_3819at 4287.783 kb on - strand, within PfGW456L13_3819at 4287.966 kb on + strand, within PfGW456L13_3820at 4287.967 kb on - strand, within PfGW456L13_3820at 4288.037 kb on + strand, within PfGW456L13_3820at 4288.131 kb on + strandat 4288.131 kb on + strand, within PfGW456L13_3820at 4288.132 kb on - strand, within PfGW456L13_3820at 4288.132 kb on - strand, within PfGW456L13_3820at 4288.136 kb on + strand, within PfGW456L13_3820at 4288.136 kb on + strand, within PfGW456L13_3820at 4288.136 kb on + strand, within PfGW456L13_3820at 4288.137 kb on - strand, within PfGW456L13_3820at 4288.137 kb on - strand, within PfGW456L13_3820at 4288.137 kb on - strand, within PfGW456L13_3820at 4288.169 kb on + strand, within PfGW456L13_3820at 4288.169 kb on + strand, within PfGW456L13_3820at 4288.246 kb on - strandat 4288.367 kb on + strand, within PfGW456L13_3821at 4288.368 kb on - strand, within PfGW456L13_3821at 4288.368 kb on - strand, within PfGW456L13_3821at 4288.368 kb on - strand, within PfGW456L13_3821at 4288.368 kb on - strand, within PfGW456L13_3821at 4288.371 kb on + strand, within PfGW456L13_3821at 4288.371 kb on + strand, within PfGW456L13_3821at 4288.414 kb on - strand, within PfGW456L13_3821at 4288.491 kb on + strand, within PfGW456L13_3821at 4288.492 kb on - strand, within PfGW456L13_3821at 4288.593 kb on + strand, within PfGW456L13_3821at 4288.593 kb on + strand, within PfGW456L13_3821at 4288.593 kb on + strand, within PfGW456L13_3821at 4288.593 kb on + strand, within PfGW456L13_3821at 4288.593 kb on + strand, within PfGW456L13_3821at 4288.593 kb on + strand, within PfGW456L13_3821at 4288.593 kb on + strand, within PfGW456L13_3821at 4288.725 kb on + strand, within PfGW456L13_3821at 4288.807 kb on - strand, within PfGW456L13_3821at 4288.807 kb on - strand, within PfGW456L13_3821at 4288.863 kb on + strand, within PfGW456L13_3821at 4288.863 kb on + strand, within PfGW456L13_3821at 4288.863 kb on + strand, within PfGW456L13_3821at 4288.863 kb on + strand, within PfGW456L13_3821at 4288.864 kb on - strand, within PfGW456L13_3821at 4288.864 kb on - strand, within PfGW456L13_3821at 4288.864 kb on - strand, within PfGW456L13_3821at 4288.864 kb on - strand, within PfGW456L13_3821at 4288.864 kb on - strand, within PfGW456L13_3821at 4288.864 kb on - strand, within PfGW456L13_3821at 4288.864 kb on - strand, within PfGW456L13_3821at 4288.864 kb on - strand, within PfGW456L13_3821at 4288.864 kb on - strand, within PfGW456L13_3821at 4288.864 kb on - strand, within PfGW456L13_3821at 4288.864 kb on - strand, within PfGW456L13_3821at 4288.923 kb on + strand, within PfGW456L13_3821at 4288.923 kb on + strand, within PfGW456L13_3821at 4288.923 kb on + strand, within PfGW456L13_3821at 4288.923 kb on + strand, within PfGW456L13_3821at 4288.923 kb on + strand, within PfGW456L13_3821at 4288.923 kb on + strand, within PfGW456L13_3821at 4288.923 kb on + strand, within PfGW456L13_3821at 4288.923 kb on + strand, within PfGW456L13_3821at 4288.923 kb on + strand, within PfGW456L13_3821at 4288.924 kb on - strand, within PfGW456L13_3821at 4288.924 kb on - strandat 4288.924 kb on - strand, within PfGW456L13_3821at 4288.924 kb on - strand, within PfGW456L13_3821at 4288.924 kb on - strand, within PfGW456L13_3821at 4288.924 kb on - strand, within PfGW456L13_3821at 4288.924 kb on - strand, within PfGW456L13_3821at 4288.924 kb on - strand, within PfGW456L13_3821at 4288.924 kb on - strand, within PfGW456L13_3821at 4288.927 kb on + strand, within PfGW456L13_3821at 4288.927 kb on + strand, within PfGW456L13_3821at 4288.927 kb on + strand, within PfGW456L13_3821at 4288.927 kb on + strand, within PfGW456L13_3821at 4288.927 kb on + strand, within PfGW456L13_3821at 4288.927 kb on + strand, within PfGW456L13_3821at 4288.927 kb on + strand, within PfGW456L13_3821at 4288.927 kb on + strand, within PfGW456L13_3821at 4288.927 kb on + strand, within PfGW456L13_3821at 4288.928 kb on - strand, within PfGW456L13_3821at 4288.928 kb on - strand, within PfGW456L13_3821at 4288.928 kb on - strand, within PfGW456L13_3821at 4288.928 kb on - strand, within PfGW456L13_3821at 4288.928 kb on - strand, within PfGW456L13_3821at 4288.928 kb on - strand, within PfGW456L13_3821at 4288.968 kb on + strand, within PfGW456L13_3821at 4288.969 kb on - strand, within PfGW456L13_3821at 4289.114 kb on + strandat 4289.115 kb on - strandat 4289.173 kb on + strandat 4289.174 kb on - strandat 4289.175 kb on + strandat 4289.175 kb on + strandat 4289.176 kb on - strandat 4289.176 kb on - strandat 4289.176 kb on - strandat 4289.176 kb on - strandat 4289.176 kb on - strandat 4289.176 kb on - strandat 4289.176 kb on - strandat 4289.176 kb on - strandat 4289.195 kb on + strandat 4289.195 kb on + strandat 4289.196 kb on - strandat 4289.196 kb on - strandat 4289.196 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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4,286,918 + PfGW456L13_3819 0.26 +1.5
4,286,918 + PfGW456L13_3819 0.26 -0.2
4,286,918 + PfGW456L13_3819 0.26 +0.1
4,286,918 + PfGW456L13_3819 0.26 +0.5
4,286,918 + PfGW456L13_3819 0.26 -2.9
4,286,919 - PfGW456L13_3819 0.26 +1.8
4,286,919 - PfGW456L13_3819 0.26 -0.6
4,286,919 - PfGW456L13_3819 0.26 -0.9
4,286,993 + PfGW456L13_3819 0.32 -1.3
4,286,993 + PfGW456L13_3819 0.32 +1.0
4,286,994 - PfGW456L13_3819 0.32 +0.7
4,286,994 - PfGW456L13_3819 0.32 -0.3
4,287,005 + PfGW456L13_3819 0.33 +1.4
4,287,089 + PfGW456L13_3819 0.39 +1.1
4,287,090 - PfGW456L13_3819 0.39 -0.1
4,287,090 - PfGW456L13_3819 0.39 +1.5
4,287,155 + PfGW456L13_3819 0.44 -0.7
4,287,155 + PfGW456L13_3819 0.44 -0.9
4,287,155 + PfGW456L13_3819 0.44 +1.7
4,287,251 + PfGW456L13_3819 0.51 -0.5
4,287,251 + PfGW456L13_3819 0.51 -0.5
4,287,252 - PfGW456L13_3819 0.51 +0.8
4,287,323 + PfGW456L13_3819 0.56 +0.6
4,287,323 + PfGW456L13_3819 0.56 +1.4
4,287,323 + PfGW456L13_3819 0.56 +0.9
4,287,324 - PfGW456L13_3819 0.56 -0.9
4,287,324 - PfGW456L13_3819 0.56 -1.5
4,287,324 - PfGW456L13_3819 0.56 +0.7
4,287,324 - PfGW456L13_3819 0.56 -0.3
4,287,329 + PfGW456L13_3819 0.56 +0.4
4,287,329 + PfGW456L13_3819 0.56 +1.1
4,287,329 + PfGW456L13_3819 0.56 -1.5
4,287,329 + PfGW456L13_3819 0.56 -1.7
4,287,329 + PfGW456L13_3819 0.56 +0.6
4,287,329 + PfGW456L13_3819 0.56 -0.5
4,287,330 - PfGW456L13_3819 0.56 +0.9
4,287,330 - PfGW456L13_3819 0.56 +0.3
4,287,330 - PfGW456L13_3819 0.56 +0.8
4,287,330 - PfGW456L13_3819 0.56 -2.3
4,287,330 - PfGW456L13_3819 0.56 -2.8
4,287,330 - PfGW456L13_3819 0.56 +1.8
4,287,608 + PfGW456L13_3819 0.77 -2.3
4,287,608 + PfGW456L13_3819 0.77 +0.1
4,287,608 + PfGW456L13_3819 0.77 -0.3
4,287,609 - PfGW456L13_3819 0.77 -2.4
4,287,609 - PfGW456L13_3819 0.77 -1.1
4,287,609 - PfGW456L13_3819 0.77 -0.5
4,287,609 - PfGW456L13_3819 0.77 +0.7
4,287,740 + PfGW456L13_3819 0.86 +0.6
4,287,740 + PfGW456L13_3819 0.86 +1.5
4,287,741 - PfGW456L13_3819 0.87 -0.6
4,287,782 + PfGW456L13_3819 0.90 +1.7
4,287,783 - PfGW456L13_3819 0.90 +1.3
4,287,783 - PfGW456L13_3819 0.90 -0.3
4,287,966 + PfGW456L13_3820 0.22 +0.7
4,287,967 - PfGW456L13_3820 0.22 -1.1
4,288,037 + PfGW456L13_3820 0.45 +2.0
4,288,131 + -0.3
4,288,131 + PfGW456L13_3820 0.75 +1.6
4,288,132 - PfGW456L13_3820 0.75 +0.2
4,288,132 - PfGW456L13_3820 0.75 +0.3
4,288,136 + PfGW456L13_3820 0.76 +0.9
4,288,136 + PfGW456L13_3820 0.76 +0.3
4,288,136 + PfGW456L13_3820 0.76 +0.6
4,288,137 - PfGW456L13_3820 0.77 -0.1
4,288,137 - PfGW456L13_3820 0.77 -2.6
4,288,137 - PfGW456L13_3820 0.77 +1.1
4,288,169 + PfGW456L13_3820 0.87 -0.5
4,288,169 + PfGW456L13_3820 0.87 +0.1
4,288,246 - +0.3
4,288,367 + PfGW456L13_3821 0.18 -0.1
4,288,368 - PfGW456L13_3821 0.18 +0.4
4,288,368 - PfGW456L13_3821 0.18 -2.3
4,288,368 - PfGW456L13_3821 0.18 -2.9
4,288,368 - PfGW456L13_3821 0.18 +0.5
4,288,371 + PfGW456L13_3821 0.19 -0.4
4,288,371 + PfGW456L13_3821 0.19 +0.4
4,288,414 - PfGW456L13_3821 0.23 +0.9
4,288,491 + PfGW456L13_3821 0.31 +2.0
4,288,492 - PfGW456L13_3821 0.31 -0.4
4,288,593 + PfGW456L13_3821 0.42 -0.3
4,288,593 + PfGW456L13_3821 0.42 +1.3
4,288,593 + PfGW456L13_3821 0.42 -2.0
4,288,593 + PfGW456L13_3821 0.42 +0.5
4,288,593 + PfGW456L13_3821 0.42 +0.7
4,288,593 + PfGW456L13_3821 0.42 -0.0
4,288,593 + PfGW456L13_3821 0.42 +2.8
4,288,725 + PfGW456L13_3821 0.55 +0.8
4,288,807 - PfGW456L13_3821 0.64 -0.0
4,288,807 - PfGW456L13_3821 0.64 +1.4
4,288,863 + PfGW456L13_3821 0.70 -2.1
4,288,863 + PfGW456L13_3821 0.70 -0.3
4,288,863 + PfGW456L13_3821 0.70 +1.0
4,288,863 + PfGW456L13_3821 0.70 -0.6
4,288,864 - PfGW456L13_3821 0.70 -0.7
4,288,864 - PfGW456L13_3821 0.70 +0.3
4,288,864 - PfGW456L13_3821 0.70 +2.2
4,288,864 - PfGW456L13_3821 0.70 -0.8
4,288,864 - PfGW456L13_3821 0.70 -1.6
4,288,864 - PfGW456L13_3821 0.70 -0.3
4,288,864 - PfGW456L13_3821 0.70 +1.0
4,288,864 - PfGW456L13_3821 0.70 -0.6
4,288,864 - PfGW456L13_3821 0.70 -0.8
4,288,864 - PfGW456L13_3821 0.70 -2.3
4,288,864 - PfGW456L13_3821 0.70 -2.1
4,288,923 + PfGW456L13_3821 0.76 +0.6
4,288,923 + PfGW456L13_3821 0.76 +0.3
4,288,923 + PfGW456L13_3821 0.76 -0.5
4,288,923 + PfGW456L13_3821 0.76 +0.6
4,288,923 + PfGW456L13_3821 0.76 +0.2
4,288,923 + PfGW456L13_3821 0.76 +0.1
4,288,923 + PfGW456L13_3821 0.76 -0.7
4,288,923 + PfGW456L13_3821 0.76 +2.8
4,288,923 + PfGW456L13_3821 0.76 -0.3
4,288,924 - PfGW456L13_3821 0.76 +0.7
4,288,924 - -0.0
4,288,924 - PfGW456L13_3821 0.76 -0.1
4,288,924 - PfGW456L13_3821 0.76 +0.9
4,288,924 - PfGW456L13_3821 0.76 +0.4
4,288,924 - PfGW456L13_3821 0.76 -0.4
4,288,924 - PfGW456L13_3821 0.76 +1.3
4,288,924 - PfGW456L13_3821 0.76 +0.1
4,288,924 - PfGW456L13_3821 0.76 -0.6
4,288,927 + PfGW456L13_3821 0.76 -0.5
4,288,927 + PfGW456L13_3821 0.76 +1.1
4,288,927 + PfGW456L13_3821 0.76 -0.0
4,288,927 + PfGW456L13_3821 0.76 -1.7
4,288,927 + PfGW456L13_3821 0.76 -1.9
4,288,927 + PfGW456L13_3821 0.76 -0.3
4,288,927 + PfGW456L13_3821 0.76 -1.4
4,288,927 + PfGW456L13_3821 0.76 -1.2
4,288,927 + PfGW456L13_3821 0.76 -1.4
4,288,928 - PfGW456L13_3821 0.77 -0.3
4,288,928 - PfGW456L13_3821 0.77 +1.9
4,288,928 - PfGW456L13_3821 0.77 -0.5
4,288,928 - PfGW456L13_3821 0.77 -2.6
4,288,928 - PfGW456L13_3821 0.77 +1.0
4,288,928 - PfGW456L13_3821 0.77 -2.2
4,288,968 + PfGW456L13_3821 0.81 -0.5
4,288,969 - PfGW456L13_3821 0.81 -0.0
4,289,114 + +0.7
4,289,115 - -0.5
4,289,173 + -0.6
4,289,174 - +1.0
4,289,175 + +1.1
4,289,175 + -1.1
4,289,176 - +0.9
4,289,176 - -1.8
4,289,176 - -2.3
4,289,176 - +1.8
4,289,176 - +1.7
4,289,176 - -1.8
4,289,176 - -1.2
4,289,176 - +0.2
4,289,195 + +0.2
4,289,195 + -1.3
4,289,196 - -2.2
4,289,196 - -0.1
4,289,196 - +1.3

Or see this region's nucleotide sequence