Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3352 and PfGW456L13_3353 are separated by 25 nucleotides PfGW456L13_3353 and PfGW456L13_3354 are separated by 147 nucleotides PfGW456L13_3354 and PfGW456L13_3355 overlap by 34 nucleotides
PfGW456L13_3352 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 3,765,108 to 3,767,276
_3352
PfGW456L13_3353 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 3,767,302 to 3,767,757
_3353
PfGW456L13_3354 - hypothetical protein, at 3,767,905 to 3,768,021
_3354
PfGW456L13_3355 - NnrS protein involved in response to NO, at 3,767,988 to 3,769,142
_3355
Position (kb)
3767
3768
3769 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3767.091 kb on + strand at 3767.092 kb on - strand at 3767.117 kb on + strand at 3767.845 kb on - strand at 3767.895 kb on - strand at 3767.925 kb on + strand, within PfGW456L13_3354 at 3767.926 kb on - strand, within PfGW456L13_3354 at 3767.926 kb on - strand at 3767.926 kb on - strand, within PfGW456L13_3354 at 3767.989 kb on + strand at 3767.989 kb on + strand at 3767.990 kb on - strand at 3768.047 kb on + strand at 3768.048 kb on - strand at 3768.048 kb on - strand at 3768.151 kb on - strand, within PfGW456L13_3355 at 3768.151 kb on - strand, within PfGW456L13_3355 at 3768.325 kb on + strand, within PfGW456L13_3355 at 3768.326 kb on - strand, within PfGW456L13_3355 at 3768.326 kb on - strand, within PfGW456L13_3355 at 3768.334 kb on + strand, within PfGW456L13_3355 at 3768.669 kb on - strand, within PfGW456L13_3355 at 3768.717 kb on + strand, within PfGW456L13_3355 at 3768.718 kb on - strand, within PfGW456L13_3355
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 3,767,091 + +1.3 3,767,092 - -0.4 3,767,117 + -1.6 3,767,845 - -0.5 3,767,895 - +0.3 3,767,925 + PfGW456L13_3354 0.17 -1.7 3,767,926 - PfGW456L13_3354 0.18 +0.0 3,767,926 - +1.9 3,767,926 - PfGW456L13_3354 0.18 +0.0 3,767,989 + -0.1 3,767,989 + -0.1 3,767,990 - -0.1 3,768,047 + +2.6 3,768,048 - -1.3 3,768,048 - +0.2 3,768,151 - PfGW456L13_3355 0.14 +0.7 3,768,151 - PfGW456L13_3355 0.14 +1.4 3,768,325 + PfGW456L13_3355 0.29 -0.4 3,768,326 - PfGW456L13_3355 0.29 +0.7 3,768,326 - PfGW456L13_3355 0.29 +0.8 3,768,334 + PfGW456L13_3355 0.30 -0.3 3,768,669 - PfGW456L13_3355 0.59 +1.5 3,768,717 + PfGW456L13_3355 0.63 -1.9 3,768,718 - PfGW456L13_3355 0.63 -1.1
Or see this region's nucleotide sequence