Experiment: Sorgoleone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_21370 and OH686_21375 are separated by 273 nucleotides OH686_21375 and OH686_21380 are separated by 133 nucleotides OH686_21380 and OH686_21385 overlap by 13 nucleotides OH686_21385 and OH686_21390 are separated by 82 nucleotides OH686_21390 and OH686_21395 overlap by 4 nucleotides OH686_21395 and OH686_21400 overlap by 4 nucleotides
OH686_21370: OH686_21370 - tRNA-Arg, at 4,376,606 to 4,376,682
_21370
OH686_21375: OH686_21375 - hypothetical protein, at 4,376,956 to 4,377,225
_21375
OH686_21380: OH686_21380 - hypothetical protein, at 4,377,359 to 4,377,610
_21380
OH686_21385: OH686_21385 - hypothetical protein, at 4,377,598 to 4,377,918
_21385
OH686_21390: OH686_21390 - hypothetical protein, at 4,378,001 to 4,378,228
_21390
OH686_21395: OH686_21395 - hypothetical protein, at 4,378,225 to 4,378,737
_21395
OH686_21400: OH686_21400 - Phage protein, at 4,378,734 to 4,379,420
_21400
Position (kb) 4377
4378 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4376.613 kb on + strand at 4376.614 kb on - strand, within OH686_21370 at 4376.614 kb on - strand, within OH686_21370 at 4376.626 kb on + strand, within OH686_21370 at 4376.626 kb on + strand, within OH686_21370 at 4376.642 kb on + strand, within OH686_21370 at 4376.642 kb on + strand, within OH686_21370 at 4376.643 kb on - strand, within OH686_21370 at 4376.643 kb on - strand, within OH686_21370 at 4376.687 kb on + strand at 4376.687 kb on + strand at 4376.687 kb on + strand at 4376.687 kb on + strand at 4376.687 kb on + strand at 4376.687 kb on + strand at 4376.687 kb on + strand at 4376.687 kb on + strand at 4376.687 kb on + strand at 4376.687 kb on + strand at 4376.688 kb on - strand at 4376.688 kb on - strand at 4376.688 kb on - strand at 4376.688 kb on - strand at 4376.688 kb on - strand at 4376.688 kb on - strand at 4376.688 kb on - strand at 4376.688 kb on - strand at 4376.904 kb on + strand at 4376.905 kb on - strand at 4376.908 kb on + strand at 4376.908 kb on + strand at 4376.908 kb on + strand at 4376.908 kb on + strand at 4376.908 kb on + strand at 4376.909 kb on - strand at 4376.909 kb on - strand at 4376.909 kb on - strand at 4376.909 kb on - strand at 4376.909 kb on - strand at 4376.909 kb on - strand at 4376.909 kb on - strand at 4376.909 kb on - strand at 4376.954 kb on + strand at 4376.954 kb on + strand at 4377.254 kb on + strand at 4377.254 kb on + strand at 4377.254 kb on + strand at 4377.254 kb on + strand at 4377.345 kb on + strand at 4377.345 kb on + strand at 4377.345 kb on + strand at 4377.360 kb on + strand at 4377.394 kb on + strand, within OH686_21380 at 4377.394 kb on + strand, within OH686_21380 at 4377.394 kb on + strand, within OH686_21380 at 4377.394 kb on + strand, within OH686_21380 at 4377.438 kb on + strand, within OH686_21380 at 4377.507 kb on + strand, within OH686_21380 at 4377.507 kb on + strand, within OH686_21380 at 4377.610 kb on + strand at 4377.610 kb on + strand at 4377.610 kb on + strand at 4377.610 kb on + strand at 4377.610 kb on + strand at 4377.610 kb on + strand at 4377.610 kb on + strand at 4377.610 kb on + strand at 4377.610 kb on + strand at 4377.610 kb on + strand at 4377.610 kb on + strand at 4377.610 kb on + strand at 4377.610 kb on + strand at 4377.611 kb on - strand at 4377.611 kb on - strand at 4377.611 kb on - strand at 4377.611 kb on - strand at 4377.677 kb on + strand, within OH686_21385 at 4377.677 kb on + strand, within OH686_21385 at 4377.677 kb on + strand, within OH686_21385 at 4377.677 kb on + strand, within OH686_21385 at 4377.677 kb on + strand, within OH686_21385 at 4377.677 kb on + strand, within OH686_21385 at 4377.677 kb on + strand, within OH686_21385 at 4377.678 kb on - strand, within OH686_21385 at 4377.678 kb on - strand, within OH686_21385 at 4377.718 kb on + strand, within OH686_21385 at 4377.718 kb on + strand, within OH686_21385 at 4377.719 kb on - strand, within OH686_21385 at 4377.719 kb on - strand, within OH686_21385 at 4377.719 kb on - strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.770 kb on + strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.771 kb on - strand, within OH686_21385 at 4377.821 kb on + strand, within OH686_21385 at 4377.821 kb on + strand, within OH686_21385 at 4377.821 kb on + strand, within OH686_21385 at 4377.821 kb on + strand, within OH686_21385 at 4377.821 kb on + strand, within OH686_21385 at 4377.822 kb on - strand, within OH686_21385 at 4377.822 kb on - strand, within OH686_21385 at 4377.822 kb on - strand, within OH686_21385 at 4377.822 kb on - strand, within OH686_21385 at 4377.822 kb on - strand, within OH686_21385 at 4377.866 kb on + strand, within OH686_21385 at 4377.866 kb on + strand, within OH686_21385 at 4377.866 kb on + strand, within OH686_21385 at 4377.866 kb on + strand, within OH686_21385 at 4377.867 kb on - strand, within OH686_21385 at 4377.872 kb on + strand, within OH686_21385 at 4377.872 kb on + strand, within OH686_21385 at 4377.872 kb on + strand, within OH686_21385 at 4377.872 kb on + strand, within OH686_21385 at 4377.872 kb on + strand, within OH686_21385 at 4377.872 kb on + strand, within OH686_21385 at 4377.873 kb on - strand, within OH686_21385 at 4377.873 kb on - strand, within OH686_21385 at 4377.873 kb on - strand, within OH686_21385 at 4377.873 kb on - strand, within OH686_21385 at 4377.873 kb on - strand, within OH686_21385 at 4377.873 kb on - strand, within OH686_21385 at 4377.873 kb on - strand, within OH686_21385 at 4377.905 kb on + strand at 4377.905 kb on + strand at 4377.905 kb on + strand at 4377.905 kb on + strand at 4377.905 kb on + strand at 4377.905 kb on + strand at 4377.906 kb on - strand at 4377.906 kb on - strand at 4377.906 kb on - strand at 4377.906 kb on - strand at 4377.906 kb on - strand at 4377.906 kb on - strand at 4377.906 kb on - strand at 4377.988 kb on + strand at 4377.988 kb on + strand at 4377.988 kb on + strand at 4377.988 kb on + strand at 4378.164 kb on + strand, within OH686_21390 at 4378.631 kb on + strand, within OH686_21395 at 4378.631 kb on + strand, within OH686_21395 at 4378.631 kb on + strand, within OH686_21395 at 4378.631 kb on + strand, within OH686_21395 at 4378.632 kb on - strand, within OH686_21395 at 4378.632 kb on - strand, within OH686_21395 at 4378.692 kb on + strand at 4378.692 kb on + strand at 4378.715 kb on + strand at 4378.715 kb on + strand at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.879 kb on + strand, within OH686_21400 at 4378.880 kb on - strand, within OH686_21400 at 4378.880 kb on - strand, within OH686_21400 at 4378.880 kb on - strand, within OH686_21400 at 4378.880 kb on - strand, within OH686_21400 at 4378.880 kb on - strand, within OH686_21400 at 4378.880 kb on - strand, within OH686_21400 at 4378.880 kb on - strand, within OH686_21400 at 4378.880 kb on - strand, within OH686_21400 at 4378.880 kb on - strand, within OH686_21400 at 4378.880 kb on - strand, within OH686_21400 at 4378.880 kb on - strand, within OH686_21400 at 4378.906 kb on + strand, within OH686_21400 at 4378.906 kb on + strand, within OH686_21400 at 4378.906 kb on + strand, within OH686_21400 at 4378.906 kb on + strand, within OH686_21400 at 4378.907 kb on - strand, within OH686_21400 at 4378.907 kb on - strand, within OH686_21400 at 4378.907 kb on - strand, within OH686_21400 at 4378.907 kb on - strand, within OH686_21400 at 4378.907 kb on - strand, within OH686_21400 at 4378.907 kb on - strand, within OH686_21400 at 4378.907 kb on - strand, within OH686_21400 at 4378.907 kb on - strand, within OH686_21400 at 4378.907 kb on - strand, within OH686_21400
Per-strain Table
Position Strand Gene LocusTag Fraction Sorgoleone (C) remove 4,376,613 + -1.5 4,376,614 - OH686_21370 0.10 -1.5 4,376,614 - OH686_21370 0.10 -0.8 4,376,626 + OH686_21370 0.26 -0.2 4,376,626 + OH686_21370 0.26 +0.6 4,376,642 + OH686_21370 0.47 -0.8 4,376,642 + OH686_21370 0.47 -1.2 4,376,643 - OH686_21370 0.48 -2.6 4,376,643 - OH686_21370 0.48 -2.4 4,376,687 + -0.7 4,376,687 + -0.4 4,376,687 + +0.8 4,376,687 + -0.2 4,376,687 + -0.1 4,376,687 + +0.4 4,376,687 + +0.5 4,376,687 + -0.7 4,376,687 + -0.5 4,376,687 + +0.4 4,376,688 - -0.4 4,376,688 - -0.3 4,376,688 - +0.5 4,376,688 - +0.1 4,376,688 - -1.0 4,376,688 - +0.5 4,376,688 - +0.7 4,376,688 - -0.2 4,376,904 + +0.6 4,376,905 - -0.2 4,376,908 + +0.6 4,376,908 + -0.3 4,376,908 + -0.5 4,376,908 + +0.7 4,376,908 + +0.2 4,376,909 - +0.6 4,376,909 - +1.9 4,376,909 - -0.7 4,376,909 - +0.7 4,376,909 - -0.6 4,376,909 - -0.6 4,376,909 - +0.8 4,376,909 - +0.7 4,376,954 + +0.3 4,376,954 + -0.2 4,377,254 + +0.4 4,377,254 + +0.6 4,377,254 + +0.4 4,377,254 + -0.8 4,377,345 + +0.1 4,377,345 + +0.2 4,377,345 + +0.4 4,377,360 + -0.4 4,377,394 + OH686_21380 0.14 -1.0 4,377,394 + OH686_21380 0.14 +0.7 4,377,394 + OH686_21380 0.14 +0.8 4,377,394 + OH686_21380 0.14 -0.1 4,377,438 + OH686_21380 0.31 +0.1 4,377,507 + OH686_21380 0.59 +1.7 4,377,507 + OH686_21380 0.59 -1.9 4,377,610 + -0.3 4,377,610 + +0.2 4,377,610 + -0.6 4,377,610 + -0.3 4,377,610 + -0.0 4,377,610 + +0.2 4,377,610 + -0.2 4,377,610 + -0.1 4,377,610 + +0.6 4,377,610 + -0.1 4,377,610 + -0.4 4,377,610 + -0.0 4,377,610 + -0.2 4,377,611 - +0.4 4,377,611 - -0.9 4,377,611 - +0.4 4,377,611 - -0.1 4,377,677 + OH686_21385 0.25 +0.2 4,377,677 + OH686_21385 0.25 -0.5 4,377,677 + OH686_21385 0.25 -1.3 4,377,677 + OH686_21385 0.25 +0.7 4,377,677 + OH686_21385 0.25 -0.3 4,377,677 + OH686_21385 0.25 -1.1 4,377,677 + OH686_21385 0.25 +0.8 4,377,678 - OH686_21385 0.25 +1.2 4,377,678 - OH686_21385 0.25 -0.4 4,377,718 + OH686_21385 0.37 +0.1 4,377,718 + OH686_21385 0.37 -0.2 4,377,719 - OH686_21385 0.38 +0.8 4,377,719 - OH686_21385 0.38 -0.1 4,377,719 - OH686_21385 0.38 -0.1 4,377,770 + OH686_21385 0.54 -0.5 4,377,770 + OH686_21385 0.54 +0.8 4,377,770 + OH686_21385 0.54 +0.2 4,377,770 + OH686_21385 0.54 -1.5 4,377,770 + OH686_21385 0.54 +0.1 4,377,770 + OH686_21385 0.54 -0.2 4,377,770 + OH686_21385 0.54 +0.7 4,377,770 + OH686_21385 0.54 +0.3 4,377,770 + OH686_21385 0.54 -0.1 4,377,770 + OH686_21385 0.54 -0.6 4,377,770 + OH686_21385 0.54 +0.7 4,377,770 + OH686_21385 0.54 +0.4 4,377,770 + OH686_21385 0.54 +0.1 4,377,770 + OH686_21385 0.54 -0.2 4,377,770 + OH686_21385 0.54 -0.2 4,377,770 + OH686_21385 0.54 +0.7 4,377,770 + OH686_21385 0.54 -0.2 4,377,771 - OH686_21385 0.54 -0.1 4,377,771 - OH686_21385 0.54 -0.5 4,377,771 - OH686_21385 0.54 -0.2 4,377,771 - OH686_21385 0.54 -0.3 4,377,771 - OH686_21385 0.54 -0.1 4,377,771 - OH686_21385 0.54 -0.9 4,377,771 - OH686_21385 0.54 -0.3 4,377,771 - OH686_21385 0.54 -0.4 4,377,771 - OH686_21385 0.54 +0.2 4,377,771 - OH686_21385 0.54 +0.6 4,377,771 - OH686_21385 0.54 -0.3 4,377,771 - OH686_21385 0.54 -0.4 4,377,771 - OH686_21385 0.54 -0.9 4,377,771 - OH686_21385 0.54 +0.2 4,377,821 + OH686_21385 0.69 +0.2 4,377,821 + OH686_21385 0.69 -0.3 4,377,821 + OH686_21385 0.69 -0.3 4,377,821 + OH686_21385 0.69 -1.0 4,377,821 + OH686_21385 0.69 +0.2 4,377,822 - OH686_21385 0.70 -1.1 4,377,822 - OH686_21385 0.70 -0.7 4,377,822 - OH686_21385 0.70 -0.4 4,377,822 - OH686_21385 0.70 -0.1 4,377,822 - OH686_21385 0.70 -0.3 4,377,866 + OH686_21385 0.83 +0.3 4,377,866 + OH686_21385 0.83 -0.1 4,377,866 + OH686_21385 0.83 +1.0 4,377,866 + OH686_21385 0.83 -0.0 4,377,867 - OH686_21385 0.84 -0.4 4,377,872 + OH686_21385 0.85 +0.2 4,377,872 + OH686_21385 0.85 -0.7 4,377,872 + OH686_21385 0.85 -1.1 4,377,872 + OH686_21385 0.85 -0.1 4,377,872 + OH686_21385 0.85 +0.2 4,377,872 + OH686_21385 0.85 +0.4 4,377,873 - OH686_21385 0.86 +0.0 4,377,873 - OH686_21385 0.86 -0.0 4,377,873 - OH686_21385 0.86 +0.4 4,377,873 - OH686_21385 0.86 -0.1 4,377,873 - OH686_21385 0.86 -0.4 4,377,873 - OH686_21385 0.86 +1.0 4,377,873 - OH686_21385 0.86 -0.5 4,377,905 + +1.2 4,377,905 + -0.0 4,377,905 + -0.9 4,377,905 + -0.2 4,377,905 + +0.7 4,377,905 + +0.2 4,377,906 - +1.0 4,377,906 - -0.5 4,377,906 - +0.2 4,377,906 - -0.0 4,377,906 - -1.1 4,377,906 - +0.3 4,377,906 - -0.0 4,377,988 + +0.6 4,377,988 + -0.7 4,377,988 + +0.9 4,377,988 + +0.7 4,378,164 + OH686_21390 0.71 -0.6 4,378,631 + OH686_21395 0.79 -0.6 4,378,631 + OH686_21395 0.79 +0.2 4,378,631 + OH686_21395 0.79 +1.2 4,378,631 + OH686_21395 0.79 -0.9 4,378,632 - OH686_21395 0.79 -0.0 4,378,632 - OH686_21395 0.79 +0.0 4,378,692 + +0.7 4,378,692 + +0.1 4,378,715 + -0.4 4,378,715 + +0.5 4,378,879 + OH686_21400 0.21 +1.3 4,378,879 + OH686_21400 0.21 -0.5 4,378,879 + OH686_21400 0.21 +0.0 4,378,879 + OH686_21400 0.21 -0.3 4,378,879 + OH686_21400 0.21 -0.2 4,378,879 + OH686_21400 0.21 -0.4 4,378,879 + OH686_21400 0.21 -0.1 4,378,879 + OH686_21400 0.21 -0.5 4,378,879 + OH686_21400 0.21 +0.3 4,378,879 + OH686_21400 0.21 +0.3 4,378,879 + OH686_21400 0.21 -0.0 4,378,879 + OH686_21400 0.21 +0.4 4,378,879 + OH686_21400 0.21 +0.3 4,378,879 + OH686_21400 0.21 +0.1 4,378,879 + OH686_21400 0.21 +0.4 4,378,879 + OH686_21400 0.21 +0.9 4,378,880 - OH686_21400 0.21 +0.1 4,378,880 - OH686_21400 0.21 -0.6 4,378,880 - OH686_21400 0.21 +0.9 4,378,880 - OH686_21400 0.21 +0.1 4,378,880 - OH686_21400 0.21 +0.4 4,378,880 - OH686_21400 0.21 -0.2 4,378,880 - OH686_21400 0.21 +0.4 4,378,880 - OH686_21400 0.21 -0.1 4,378,880 - OH686_21400 0.21 -1.3 4,378,880 - OH686_21400 0.21 -0.5 4,378,880 - OH686_21400 0.21 -1.2 4,378,906 + OH686_21400 0.25 -0.4 4,378,906 + OH686_21400 0.25 +0.7 4,378,906 + OH686_21400 0.25 -0.2 4,378,906 + OH686_21400 0.25 -0.4 4,378,907 - OH686_21400 0.25 +0.2 4,378,907 - OH686_21400 0.25 -0.5 4,378,907 - OH686_21400 0.25 -0.5 4,378,907 - OH686_21400 0.25 +0.0 4,378,907 - OH686_21400 0.25 +1.1 4,378,907 - OH686_21400 0.25 +0.4 4,378,907 - OH686_21400 0.25 -0.4 4,378,907 - OH686_21400 0.25 +0.6 4,378,907 - OH686_21400 0.25 -0.4
Or see this region's nucleotide sequence