Strain Fitness in Pseudomonas sp. S08-1 around OH686_12685

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_12675 and OH686_12680 are separated by 154 nucleotidesOH686_12680 and OH686_12685 are separated by 16 nucleotidesOH686_12685 and OH686_12690 are separated by 84 nucleotidesOH686_12690 and OH686_12695 are separated by 53 nucleotidesOH686_12695 and OH686_12700 are separated by 12 nucleotides OH686_12675: OH686_12675 - Chromosome (plasmid) partitioning protein ParB, at 2,665,209 to 2,665,919 _12675 OH686_12680: OH686_12680 - ATP synthase protein I, at 2,666,074 to 2,666,481 _12680 OH686_12685: OH686_12685 - ATP synthase F0, A subunit, at 2,666,498 to 2,667,367 _12685 OH686_12690: OH686_12690 - ATP synthase F0, C subunit, at 2,667,452 to 2,667,709 _12690 OH686_12695: OH686_12695 - ATP synthase F0, B subunit, at 2,667,763 to 2,668,233 _12695 OH686_12700: OH686_12700 - ATP synthase F1, delta subunit, at 2,668,246 to 2,668,782 _12700 Position (kb) 2666 2667 2668Strain fitness (log2 ratio) -1 0 1at 2665.814 kb on - strand, within OH686_12675at 2665.814 kb on - strand, within OH686_12675at 2665.872 kb on + strandat 2665.873 kb on - strandat 2665.942 kb on + strandat 2665.942 kb on + strandat 2665.942 kb on + strandat 2665.943 kb on - strandat 2665.943 kb on - strandat 2665.943 kb on - strandat 2665.996 kb on + strandat 2665.998 kb on + strandat 2665.998 kb on + strandat 2665.998 kb on + strandat 2666.027 kb on + strandat 2666.045 kb on + strandat 2666.045 kb on + strandat 2666.045 kb on + strandat 2666.479 kb on + strandat 2666.479 kb on + strandat 2666.479 kb on + strandat 2666.479 kb on + strandat 2666.479 kb on + strandat 2666.479 kb on + strandat 2667.365 kb on + strandat 2667.365 kb on + strandat 2667.365 kb on + strandat 2667.365 kb on + strandat 2667.365 kb on + strandat 2667.384 kb on + strandat 2667.406 kb on + strandat 2667.419 kb on + strandat 2667.434 kb on + strandat 2667.707 kb on + strandat 2667.707 kb on + strandat 2667.728 kb on + strandat 2667.728 kb on + strandat 2667.728 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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2,665,814 - OH686_12675 0.85 +0.1
2,665,814 - OH686_12675 0.85 -1.1
2,665,872 + -0.7
2,665,873 - +1.1
2,665,942 + -0.4
2,665,942 + -0.5
2,665,942 + -0.3
2,665,943 - -1.1
2,665,943 - -0.7
2,665,943 - +1.0
2,665,996 + +0.4
2,665,998 + -1.5
2,665,998 + -0.1
2,665,998 + +1.7
2,666,027 + -0.6
2,666,045 + +0.2
2,666,045 + +0.7
2,666,045 + +1.2
2,666,479 + -1.2
2,666,479 + +0.5
2,666,479 + -0.1
2,666,479 + -0.4
2,666,479 + -1.3
2,666,479 + -0.7
2,667,365 + +1.0
2,667,365 + -0.5
2,667,365 + -0.1
2,667,365 + -1.4
2,667,365 + +0.7
2,667,384 + -0.3
2,667,406 + -0.0
2,667,419 + -0.6
2,667,434 + +0.7
2,667,707 + +0.1
2,667,707 + -1.4
2,667,728 + -1.5
2,667,728 + -0.2
2,667,728 + +0.3

Or see this region's nucleotide sequence