Experiment: Sorgoleone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_12675 and OH686_12680 are separated by 154 nucleotides OH686_12680 and OH686_12685 are separated by 16 nucleotides OH686_12685 and OH686_12690 are separated by 84 nucleotides OH686_12690 and OH686_12695 are separated by 53 nucleotides OH686_12695 and OH686_12700 are separated by 12 nucleotides
OH686_12675: OH686_12675 - Chromosome (plasmid) partitioning protein ParB, at 2,665,209 to 2,665,919
_12675
OH686_12680: OH686_12680 - ATP synthase protein I, at 2,666,074 to 2,666,481
_12680
OH686_12685: OH686_12685 - ATP synthase F0, A subunit, at 2,666,498 to 2,667,367
_12685
OH686_12690: OH686_12690 - ATP synthase F0, C subunit, at 2,667,452 to 2,667,709
_12690
OH686_12695: OH686_12695 - ATP synthase F0, B subunit, at 2,667,763 to 2,668,233
_12695
OH686_12700: OH686_12700 - ATP synthase F1, delta subunit, at 2,668,246 to 2,668,782
_12700
Position (kb)
2666
2667
2668 Strain fitness (log2 ratio)
-1
0
1 at 2665.814 kb on - strand, within OH686_12675 at 2665.814 kb on - strand, within OH686_12675 at 2665.872 kb on + strand at 2665.873 kb on - strand at 2665.942 kb on + strand at 2665.942 kb on + strand at 2665.942 kb on + strand at 2665.943 kb on - strand at 2665.943 kb on - strand at 2665.943 kb on - strand at 2665.996 kb on + strand at 2665.998 kb on + strand at 2665.998 kb on + strand at 2665.998 kb on + strand at 2666.027 kb on + strand at 2666.045 kb on + strand at 2666.045 kb on + strand at 2666.045 kb on + strand at 2666.479 kb on + strand at 2666.479 kb on + strand at 2666.479 kb on + strand at 2666.479 kb on + strand at 2666.479 kb on + strand at 2666.479 kb on + strand at 2667.365 kb on + strand at 2667.365 kb on + strand at 2667.365 kb on + strand at 2667.365 kb on + strand at 2667.365 kb on + strand at 2667.384 kb on + strand at 2667.406 kb on + strand at 2667.419 kb on + strand at 2667.434 kb on + strand at 2667.707 kb on + strand at 2667.707 kb on + strand at 2667.728 kb on + strand at 2667.728 kb on + strand at 2667.728 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sorgoleone (C) remove 2,665,814 - OH686_12675 0.85 +0.1 2,665,814 - OH686_12675 0.85 -1.1 2,665,872 + -0.7 2,665,873 - +1.1 2,665,942 + -0.4 2,665,942 + -0.5 2,665,942 + -0.3 2,665,943 - -1.1 2,665,943 - -0.7 2,665,943 - +1.0 2,665,996 + +0.4 2,665,998 + -1.5 2,665,998 + -0.1 2,665,998 + +1.7 2,666,027 + -0.6 2,666,045 + +0.2 2,666,045 + +0.7 2,666,045 + +1.2 2,666,479 + -1.2 2,666,479 + +0.5 2,666,479 + -0.1 2,666,479 + -0.4 2,666,479 + -1.3 2,666,479 + -0.7 2,667,365 + +1.0 2,667,365 + -0.5 2,667,365 + -0.1 2,667,365 + -1.4 2,667,365 + +0.7 2,667,384 + -0.3 2,667,406 + -0.0 2,667,419 + -0.6 2,667,434 + +0.7 2,667,707 + +0.1 2,667,707 + -1.4 2,667,728 + -1.5 2,667,728 + -0.2 2,667,728 + +0.3
Or see this region's nucleotide sequence