Strain Fitness in Pseudomonas sp. S08-1 around OH686_01895

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01890 and OH686_01895 overlap by 4 nucleotidesOH686_01895 and OH686_01900 are separated by 51 nucleotides OH686_01890: OH686_01890 - Osmosensitive K+ channel histidine kinase KdpD, at 402,461 to 405,112 _01890 OH686_01895: OH686_01895 - K+-transporting ATPase, C subunit, at 405,109 to 405,684 _01895 OH686_01900: OH686_01900 - K+-transporting ATPase, B subunit, at 405,736 to 407,784 _01900 Position (kb) 405 406Strain fitness (log2 ratio) -2 -1 0 1at 404.152 kb on + strand, within OH686_01890at 404.153 kb on - strand, within OH686_01890at 404.532 kb on + strand, within OH686_01890at 404.532 kb on + strand, within OH686_01890at 404.532 kb on + strand, within OH686_01890at 404.532 kb on + strand, within OH686_01890at 404.532 kb on + strand, within OH686_01890at 404.532 kb on + strand, within OH686_01890at 404.532 kb on + strand, within OH686_01890at 404.532 kb on + strand, within OH686_01890at 404.532 kb on + strand, within OH686_01890at 404.532 kb on + strand, within OH686_01890at 404.533 kb on - strand, within OH686_01890at 404.533 kb on - strand, within OH686_01890at 404.533 kb on - strand, within OH686_01890at 404.533 kb on - strand, within OH686_01890at 404.533 kb on - strand, within OH686_01890at 404.533 kb on - strand, within OH686_01890at 404.533 kb on - strand, within OH686_01890at 404.533 kb on - strand, within OH686_01890at 404.533 kb on - strand, within OH686_01890at 404.533 kb on - strand, within OH686_01890at 404.533 kb on - strand, within OH686_01890at 404.533 kb on - strand, within OH686_01890at 404.533 kb on - strand, within OH686_01890at 404.584 kb on + strand, within OH686_01890at 404.706 kb on + strand, within OH686_01890at 404.706 kb on + strand, within OH686_01890at 404.706 kb on + strand, within OH686_01890at 404.706 kb on + strand, within OH686_01890at 404.706 kb on + strand, within OH686_01890at 404.706 kb on + strand, within OH686_01890at 404.706 kb on + strand, within OH686_01890at 404.706 kb on + strand, within OH686_01890at 404.706 kb on + strand, within OH686_01890at 404.706 kb on + strand, within OH686_01890at 404.706 kb on + strand, within OH686_01890at 404.706 kb on + strand, within OH686_01890at 404.707 kb on - strand, within OH686_01890at 404.707 kb on - strand, within OH686_01890at 404.707 kb on - strand, within OH686_01890at 404.707 kb on - strand, within OH686_01890at 404.707 kb on - strand, within OH686_01890at 404.707 kb on - strand, within OH686_01890at 404.804 kb on + strand, within OH686_01890at 404.805 kb on - strand, within OH686_01890at 404.868 kb on + strandat 404.963 kb on + strandat 404.963 kb on + strandat 404.963 kb on + strandat 404.964 kb on - strandat 404.964 kb on - strandat 405.006 kb on + strandat 405.006 kb on + strandat 405.007 kb on - strandat 405.007 kb on - strandat 405.007 kb on - strandat 405.007 kb on - strandat 405.017 kb on + strandat 405.017 kb on + strandat 405.274 kb on + strand, within OH686_01895at 405.275 kb on - strand, within OH686_01895at 405.275 kb on - strand, within OH686_01895at 405.275 kb on - strand, within OH686_01895at 405.275 kb on - strand, within OH686_01895at 405.275 kb on - strand, within OH686_01895at 405.698 kb on + strandat 405.698 kb on + strandat 405.698 kb on + strandat 405.699 kb on - strandat 405.699 kb on - strandat 405.699 kb on - strandat 405.815 kb on + strandat 405.815 kb on + strandat 405.815 kb on + strandat 405.815 kb on + strandat 405.815 kb on + strandat 405.815 kb on + strandat 405.815 kb on + strandat 405.816 kb on - strandat 405.816 kb on - strandat 405.816 kb on - strandat 405.816 kb on - strandat 405.816 kb on - strandat 405.816 kb on - strandat 405.989 kb on + strand, within OH686_01900at 405.989 kb on + strand, within OH686_01900at 405.989 kb on + strand, within OH686_01900at 405.990 kb on - strand, within OH686_01900at 405.990 kb on - strand, within OH686_01900at 405.990 kb on - strand, within OH686_01900at 405.990 kb on - strand, within OH686_01900at 405.990 kb on - strand, within OH686_01900at 406.025 kb on + strand, within OH686_01900at 406.025 kb on + strand, within OH686_01900at 406.025 kb on + strand, within OH686_01900at 406.025 kb on + strand, within OH686_01900at 406.025 kb on + strand, within OH686_01900at 406.025 kb on + strand, within OH686_01900at 406.026 kb on - strand, within OH686_01900at 406.026 kb on - strand, within OH686_01900at 406.026 kb on - strand, within OH686_01900at 406.026 kb on - strand, within OH686_01900at 406.026 kb on - strand, within OH686_01900at 406.026 kb on - strand, within OH686_01900at 406.026 kb on - strand, within OH686_01900at 406.026 kb on - strand, within OH686_01900at 406.026 kb on - strand, within OH686_01900at 406.026 kb on - strand, within OH686_01900at 406.574 kb on + strand, within OH686_01900at 406.574 kb on + strand, within OH686_01900at 406.574 kb on + strand, within OH686_01900at 406.575 kb on - strand, within OH686_01900at 406.575 kb on - strand, within OH686_01900at 406.575 kb on - strand, within OH686_01900

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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404,152 + OH686_01890 0.64 -0.5
404,153 - OH686_01890 0.64 +0.8
404,532 + OH686_01890 0.78 +0.8
404,532 + OH686_01890 0.78 +0.9
404,532 + OH686_01890 0.78 +0.3
404,532 + OH686_01890 0.78 +0.2
404,532 + OH686_01890 0.78 +0.3
404,532 + OH686_01890 0.78 +0.4
404,532 + OH686_01890 0.78 -1.0
404,532 + OH686_01890 0.78 +0.1
404,532 + OH686_01890 0.78 +0.5
404,532 + OH686_01890 0.78 -0.4
404,533 - OH686_01890 0.78 -0.7
404,533 - OH686_01890 0.78 -1.6
404,533 - OH686_01890 0.78 -2.0
404,533 - OH686_01890 0.78 +0.7
404,533 - OH686_01890 0.78 +1.0
404,533 - OH686_01890 0.78 +0.9
404,533 - OH686_01890 0.78 +0.2
404,533 - OH686_01890 0.78 +0.3
404,533 - OH686_01890 0.78 -0.1
404,533 - OH686_01890 0.78 +0.9
404,533 - OH686_01890 0.78 -1.4
404,533 - OH686_01890 0.78 +0.0
404,533 - OH686_01890 0.78 +0.3
404,584 + OH686_01890 0.80 +0.4
404,706 + OH686_01890 0.85 +0.1
404,706 + OH686_01890 0.85 +0.5
404,706 + OH686_01890 0.85 -0.4
404,706 + OH686_01890 0.85 -0.2
404,706 + OH686_01890 0.85 -0.1
404,706 + OH686_01890 0.85 +0.2
404,706 + OH686_01890 0.85 +0.2
404,706 + OH686_01890 0.85 -0.9
404,706 + OH686_01890 0.85 +0.3
404,706 + OH686_01890 0.85 +0.5
404,706 + OH686_01890 0.85 +0.7
404,706 + OH686_01890 0.85 -0.2
404,707 - OH686_01890 0.85 +0.3
404,707 - OH686_01890 0.85 -0.1
404,707 - OH686_01890 0.85 -1.1
404,707 - OH686_01890 0.85 +0.4
404,707 - OH686_01890 0.85 -0.7
404,707 - OH686_01890 0.85 -0.1
404,804 + OH686_01890 0.88 +0.8
404,805 - OH686_01890 0.88 -1.1
404,868 + +0.9
404,963 + +0.2
404,963 + +0.9
404,963 + +0.2
404,964 - -0.1
404,964 - +0.9
405,006 + -0.1
405,006 + -0.2
405,007 - -0.6
405,007 - -0.9
405,007 - -0.4
405,007 - -0.9
405,017 + -0.9
405,017 + -0.2
405,274 + OH686_01895 0.29 -0.6
405,275 - OH686_01895 0.29 +1.6
405,275 - OH686_01895 0.29 -0.5
405,275 - OH686_01895 0.29 -2.5
405,275 - OH686_01895 0.29 +0.1
405,275 - OH686_01895 0.29 +0.8
405,698 + +1.0
405,698 + +0.3
405,698 + -1.0
405,699 - -0.2
405,699 - -0.7
405,699 - -0.1
405,815 + -0.4
405,815 + -0.5
405,815 + +0.4
405,815 + +0.1
405,815 + -0.9
405,815 + -1.4
405,815 + -0.9
405,816 - +0.4
405,816 - +1.3
405,816 - -0.3
405,816 - +0.4
405,816 - +0.1
405,816 - +0.6
405,989 + OH686_01900 0.12 -0.7
405,989 + OH686_01900 0.12 -0.7
405,989 + OH686_01900 0.12 +0.1
405,990 - OH686_01900 0.12 +0.4
405,990 - OH686_01900 0.12 +1.6
405,990 - OH686_01900 0.12 +0.1
405,990 - OH686_01900 0.12 +0.2
405,990 - OH686_01900 0.12 -0.2
406,025 + OH686_01900 0.14 +0.3
406,025 + OH686_01900 0.14 -0.0
406,025 + OH686_01900 0.14 -0.5
406,025 + OH686_01900 0.14 +0.1
406,025 + OH686_01900 0.14 -0.0
406,025 + OH686_01900 0.14 -1.1
406,026 - OH686_01900 0.14 -1.3
406,026 - OH686_01900 0.14 +0.4
406,026 - OH686_01900 0.14 -0.2
406,026 - OH686_01900 0.14 +0.1
406,026 - OH686_01900 0.14 -0.9
406,026 - OH686_01900 0.14 +0.2
406,026 - OH686_01900 0.14 +0.5
406,026 - OH686_01900 0.14 +0.1
406,026 - OH686_01900 0.14 +0.2
406,026 - OH686_01900 0.14 +1.0
406,574 + OH686_01900 0.41 +1.1
406,574 + OH686_01900 0.41 -0.0
406,574 + OH686_01900 0.41 -1.8
406,575 - OH686_01900 0.41 +0.6
406,575 - OH686_01900 0.41 +0.1
406,575 - OH686_01900 0.41 -0.7

Or see this region's nucleotide sequence