Strain Fitness in Pseudomonas sp. S08-1 around OH686_01395

Experiment: Sorgoleone (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_01385 and OH686_01390 are separated by 584 nucleotidesOH686_01390 and OH686_01395 overlap by 4 nucleotidesOH686_01395 and OH686_01400 are separated by 8 nucleotidesOH686_01400 and OH686_01405 are separated by 43 nucleotidesOH686_01405 and OH686_01410 are separated by 18 nucleotides OH686_01385: OH686_01385 - hypothetical protein, at 308,393 to 308,800 _01385 OH686_01390: OH686_01390 - hypothetical protein' product='hypothetical protein, at 309,385 to 309,621 _01390 OH686_01395: OH686_01395 - hypothetical protein' product='hypothetical protein, at 309,618 to 310,016 _01395 OH686_01400: OH686_01400 - hypothetical protein' product='hypothetical protein, at 310,025 to 310,537 _01400 OH686_01405: OH686_01405 - hypothetical protein, at 310,581 to 310,985 _01405 OH686_01410: OH686_01410 - hypothetical protein, at 311,004 to 311,498 _01410 Position (kb) 309 310 311Strain fitness (log2 ratio) -2 -1 0 1 2at 308.706 kb on + strand, within OH686_01385at 308.706 kb on + strand, within OH686_01385at 308.717 kb on + strand, within OH686_01385at 308.718 kb on - strand, within OH686_01385at 308.763 kb on + strandat 308.801 kb on + strandat 308.801 kb on + strandat 308.802 kb on - strandat 308.802 kb on - strandat 308.883 kb on + strandat 308.883 kb on + strandat 308.883 kb on + strandat 308.884 kb on - strandat 308.888 kb on - strandat 308.888 kb on - strandat 308.897 kb on - strandat 308.897 kb on - strandat 308.965 kb on + strandat 309.014 kb on + strandat 309.035 kb on + strandat 309.036 kb on - strandat 309.038 kb on - strandat 309.039 kb on + strandat 309.040 kb on - strandat 309.062 kb on - strandat 309.064 kb on - strandat 309.066 kb on - strandat 309.086 kb on + strandat 309.086 kb on + strandat 309.087 kb on - strandat 309.182 kb on - strandat 309.234 kb on + strandat 309.240 kb on + strandat 309.240 kb on + strandat 309.266 kb on + strandat 309.313 kb on - strandat 309.369 kb on + strandat 309.369 kb on + strandat 309.372 kb on - strandat 309.547 kb on + strand, within OH686_01390at 309.551 kb on + strand, within OH686_01390at 309.552 kb on - strand, within OH686_01390at 309.558 kb on + strand, within OH686_01390at 309.739 kb on + strand, within OH686_01395at 309.740 kb on - strand, within OH686_01395at 309.830 kb on + strand, within OH686_01395at 309.840 kb on + strand, within OH686_01395at 309.842 kb on + strand, within OH686_01395at 309.854 kb on + strand, within OH686_01395at 309.899 kb on - strand, within OH686_01395at 310.020 kb on + strandat 310.021 kb on - strandat 310.134 kb on + strand, within OH686_01400at 310.221 kb on + strand, within OH686_01400at 310.293 kb on - strand, within OH686_01400at 310.406 kb on - strand, within OH686_01400at 310.446 kb on - strand, within OH686_01400at 310.535 kb on + strandat 310.536 kb on - strandat 310.605 kb on + strandat 310.668 kb on + strand, within OH686_01405at 310.668 kb on + strand, within OH686_01405at 310.668 kb on + strand, within OH686_01405at 310.668 kb on + strand, within OH686_01405at 310.668 kb on + strand, within OH686_01405at 310.669 kb on - strand, within OH686_01405at 310.671 kb on + strand, within OH686_01405at 310.672 kb on - strand, within OH686_01405at 310.672 kb on - strand, within OH686_01405at 310.676 kb on - strand, within OH686_01405at 310.695 kb on + strand, within OH686_01405at 310.696 kb on - strand, within OH686_01405at 310.797 kb on + strand, within OH686_01405at 310.797 kb on + strand, within OH686_01405at 310.798 kb on - strand, within OH686_01405at 310.798 kb on - strand, within OH686_01405at 310.798 kb on - strand, within OH686_01405at 310.798 kb on - strand, within OH686_01405at 310.798 kb on - strand, within OH686_01405at 310.798 kb on - strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.799 kb on + strand, within OH686_01405at 310.800 kb on - strand, within OH686_01405at 310.800 kb on - strand, within OH686_01405at 310.800 kb on - strand, within OH686_01405at 310.800 kb on - strand, within OH686_01405at 310.800 kb on - strand, within OH686_01405at 310.800 kb on - strand, within OH686_01405at 310.854 kb on + strand, within OH686_01405at 310.854 kb on + strand, within OH686_01405at 310.855 kb on - strand, within OH686_01405at 310.881 kb on + strand, within OH686_01405at 310.881 kb on + strand, within OH686_01405at 310.881 kb on + strand, within OH686_01405at 310.882 kb on - strand, within OH686_01405at 310.882 kb on - strand, within OH686_01405at 310.882 kb on - strand, within OH686_01405at 310.882 kb on - strand, within OH686_01405at 310.882 kb on - strand, within OH686_01405at 310.883 kb on + strand, within OH686_01405at 310.883 kb on + strand, within OH686_01405at 310.883 kb on + strand, within OH686_01405at 310.884 kb on - strand, within OH686_01405at 310.884 kb on - strand, within OH686_01405at 310.884 kb on - strand, within OH686_01405at 310.884 kb on - strand, within OH686_01405at 310.994 kb on + strandat 310.994 kb on + strandat 310.995 kb on - strandat 310.995 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sorgoleone (C)
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308,706 + OH686_01385 0.77 -0.5
308,706 + OH686_01385 0.77 +0.3
308,717 + OH686_01385 0.79 -0.2
308,718 - OH686_01385 0.80 -0.5
308,763 + -0.3
308,801 + -0.4
308,801 + -0.4
308,802 - -0.3
308,802 - +1.9
308,883 + +0.3
308,883 + +0.1
308,883 + -0.3
308,884 - +0.6
308,888 - +0.7
308,888 - +0.2
308,897 - -0.0
308,897 - +0.1
308,965 + +0.7
309,014 + +0.3
309,035 + +0.4
309,036 - +0.3
309,038 - +0.3
309,039 + -0.1
309,040 - -1.6
309,062 - -0.4
309,064 - -0.1
309,066 - +0.8
309,086 + +0.8
309,086 + -2.0
309,087 - +0.4
309,182 - +0.2
309,234 + -0.7
309,240 + -0.1
309,240 + -0.4
309,266 + +0.4
309,313 - +0.4
309,369 + +1.1
309,369 + -0.2
309,372 - -0.3
309,547 + OH686_01390 0.68 -0.0
309,551 + OH686_01390 0.70 -0.4
309,552 - OH686_01390 0.70 +0.1
309,558 + OH686_01390 0.73 -1.2
309,739 + OH686_01395 0.30 -0.1
309,740 - OH686_01395 0.31 +0.5
309,830 + OH686_01395 0.53 -0.4
309,840 + OH686_01395 0.56 -0.3
309,842 + OH686_01395 0.56 -0.3
309,854 + OH686_01395 0.59 -1.7
309,899 - OH686_01395 0.70 -0.0
310,020 + +1.0
310,021 - -0.8
310,134 + OH686_01400 0.21 +0.3
310,221 + OH686_01400 0.38 +0.5
310,293 - OH686_01400 0.52 +0.0
310,406 - OH686_01400 0.74 +0.7
310,446 - OH686_01400 0.82 -0.0
310,535 + -0.3
310,536 - -1.0
310,605 + +0.1
310,668 + OH686_01405 0.21 -2.0
310,668 + OH686_01405 0.21 +0.1
310,668 + OH686_01405 0.21 +0.1
310,668 + OH686_01405 0.21 +0.1
310,668 + OH686_01405 0.21 -1.0
310,669 - OH686_01405 0.22 +0.4
310,671 + OH686_01405 0.22 -2.7
310,672 - OH686_01405 0.22 -0.8
310,672 - OH686_01405 0.22 -0.5
310,676 - OH686_01405 0.23 +0.6
310,695 + OH686_01405 0.28 -2.7
310,696 - OH686_01405 0.28 +0.2
310,797 + OH686_01405 0.53 +0.2
310,797 + OH686_01405 0.53 +0.2
310,798 - OH686_01405 0.54 -0.2
310,798 - OH686_01405 0.54 +0.6
310,798 - OH686_01405 0.54 -0.4
310,798 - OH686_01405 0.54 +0.0
310,798 - OH686_01405 0.54 +0.4
310,798 - OH686_01405 0.54 +0.6
310,799 + OH686_01405 0.54 +0.9
310,799 + OH686_01405 0.54 -0.2
310,799 + OH686_01405 0.54 -0.4
310,799 + OH686_01405 0.54 -0.5
310,799 + OH686_01405 0.54 +0.6
310,799 + OH686_01405 0.54 +0.2
310,799 + OH686_01405 0.54 +1.2
310,800 - OH686_01405 0.54 +0.1
310,800 - OH686_01405 0.54 +1.0
310,800 - OH686_01405 0.54 +0.3
310,800 - OH686_01405 0.54 +0.0
310,800 - OH686_01405 0.54 +0.6
310,800 - OH686_01405 0.54 +0.9
310,854 + OH686_01405 0.67 -0.7
310,854 + OH686_01405 0.67 -0.2
310,855 - OH686_01405 0.68 +0.3
310,881 + OH686_01405 0.74 -0.2
310,881 + OH686_01405 0.74 +0.2
310,881 + OH686_01405 0.74 +0.3
310,882 - OH686_01405 0.74 +0.4
310,882 - OH686_01405 0.74 -1.4
310,882 - OH686_01405 0.74 -0.5
310,882 - OH686_01405 0.74 -0.1
310,882 - OH686_01405 0.74 +0.1
310,883 + OH686_01405 0.75 +0.2
310,883 + OH686_01405 0.75 -0.9
310,883 + OH686_01405 0.75 +0.3
310,884 - OH686_01405 0.75 +0.5
310,884 - OH686_01405 0.75 +1.1
310,884 - OH686_01405 0.75 +0.8
310,884 - OH686_01405 0.75 -0.0
310,994 + -0.2
310,994 + +0.4
310,995 - -0.3
310,995 - +0.5

Or see this region's nucleotide sequence