Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4513 and EX28DRAFT_4514 are separated by 10 nucleotides EX28DRAFT_4514 and EX28DRAFT_4515 overlap by 76 nucleotides EX28DRAFT_4515 and EX28DRAFT_4516 are separated by 262 nucleotides
EX28DRAFT_4513: EX28DRAFT_4513 - Trk-type K+ transport systems, membrane components, at 79,713 to 81,164
_4513
EX28DRAFT_4514: EX28DRAFT_4514 - Flavodoxin, at 81,175 to 81,720
_4514
EX28DRAFT_4515: EX28DRAFT_4515 - hypothetical protein, at 81,645 to 81,830
_4515
EX28DRAFT_4516: EX28DRAFT_4516 - 16S, at 82,093 to 82,150
_4516
Position (kb) 81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 80.650 kb on + strand, within EX28DRAFT_4513 at 80.726 kb on - strand, within EX28DRAFT_4513 at 80.738 kb on + strand, within EX28DRAFT_4513 at 80.787 kb on - strand, within EX28DRAFT_4513 at 80.787 kb on - strand, within EX28DRAFT_4513 at 80.859 kb on - strand, within EX28DRAFT_4513 at 80.859 kb on - strand, within EX28DRAFT_4513 at 80.859 kb on - strand, within EX28DRAFT_4513 at 81.095 kb on + strand at 81.146 kb on + strand at 81.695 kb on + strand at 81.714 kb on + strand at 81.714 kb on + strand at 81.715 kb on - strand at 81.715 kb on - strand at 81.718 kb on + strand at 81.718 kb on + strand at 81.718 kb on + strand at 81.726 kb on - strand, within EX28DRAFT_4515 at 81.785 kb on - strand, within EX28DRAFT_4515 at 81.793 kb on - strand, within EX28DRAFT_4515
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 80,650 + EX28DRAFT_4513 0.65 +1.3 80,726 - EX28DRAFT_4513 0.70 -0.1 80,738 + EX28DRAFT_4513 0.71 -3.1 80,787 - EX28DRAFT_4513 0.74 +0.4 80,787 - EX28DRAFT_4513 0.74 -2.8 80,859 - EX28DRAFT_4513 0.79 -0.8 80,859 - EX28DRAFT_4513 0.79 -0.8 80,859 - EX28DRAFT_4513 0.79 -0.9 81,095 + +0.3 81,146 + +0.5 81,695 + -0.4 81,714 + +0.2 81,714 + +0.5 81,715 - -1.2 81,715 - +0.2 81,718 + +1.0 81,718 + +0.8 81,718 + -0.6 81,726 - EX28DRAFT_4515 0.44 -0.0 81,785 - EX28DRAFT_4515 0.75 -2.1 81,793 - EX28DRAFT_4515 0.80 -1.4
Or see this region's nucleotide sequence