Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4463

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4462 and EX28DRAFT_4463 are separated by 12 nucleotidesEX28DRAFT_4463 and EX28DRAFT_4464 are separated by 197 nucleotides EX28DRAFT_4462: EX28DRAFT_4462 - WzyE protein, at 29,513 to 30,865 _4462 EX28DRAFT_4463: EX28DRAFT_4463 - Teichoic acid biosynthesis proteins, at 30,878 to 31,618 _4463 EX28DRAFT_4464: EX28DRAFT_4464 - Gamma-aminobutyrate permease and related permeases, at 31,816 to 33,201 _4464 Position (kb) 30 31 32Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 30.791 kb on + strandat 30.867 kb on + strandat 30.876 kb on + strandat 30.876 kb on + strandat 30.886 kb on + strandat 30.887 kb on - strandat 30.887 kb on - strandat 30.994 kb on + strand, within EX28DRAFT_4463at 31.083 kb on - strand, within EX28DRAFT_4463at 31.279 kb on + strand, within EX28DRAFT_4463at 31.442 kb on + strand, within EX28DRAFT_4463at 31.442 kb on + strand, within EX28DRAFT_4463at 31.442 kb on + strand, within EX28DRAFT_4463at 31.443 kb on - strand, within EX28DRAFT_4463at 31.443 kb on - strand, within EX28DRAFT_4463at 31.443 kb on - strand, within EX28DRAFT_4463at 31.463 kb on + strand, within EX28DRAFT_4463at 31.464 kb on - strand, within EX28DRAFT_4463at 31.641 kb on - strandat 31.675 kb on - strandat 31.754 kb on - strandat 31.754 kb on - strandat 31.754 kb on - strandat 31.783 kb on - strandat 31.838 kb on + strandat 31.838 kb on + strandat 31.874 kb on + strandat 31.960 kb on + strand, within EX28DRAFT_4464at 31.961 kb on - strand, within EX28DRAFT_4464at 31.961 kb on - strand, within EX28DRAFT_4464at 31.962 kb on + strand, within EX28DRAFT_4464at 31.963 kb on - strand, within EX28DRAFT_4464at 31.963 kb on - strand, within EX28DRAFT_4464at 32.062 kb on + strand, within EX28DRAFT_4464at 32.063 kb on - strand, within EX28DRAFT_4464at 32.064 kb on + strand, within EX28DRAFT_4464at 32.064 kb on + strand, within EX28DRAFT_4464at 32.064 kb on + strand, within EX28DRAFT_4464at 32.065 kb on - strand, within EX28DRAFT_4464at 32.065 kb on - strand, within EX28DRAFT_4464at 32.109 kb on + strand, within EX28DRAFT_4464at 32.109 kb on + strand, within EX28DRAFT_4464at 32.110 kb on - strand, within EX28DRAFT_4464at 32.156 kb on - strand, within EX28DRAFT_4464at 32.452 kb on + strand, within EX28DRAFT_4464at 32.475 kb on + strand, within EX28DRAFT_4464

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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30,791 + -0.4
30,867 + +0.2
30,876 + -0.3
30,876 + -0.2
30,886 + +0.5
30,887 - -2.3
30,887 - +0.0
30,994 + EX28DRAFT_4463 0.16 -3.5
31,083 - EX28DRAFT_4463 0.28 -0.5
31,279 + EX28DRAFT_4463 0.54 -1.5
31,442 + EX28DRAFT_4463 0.76 -1.6
31,442 + EX28DRAFT_4463 0.76 -2.1
31,442 + EX28DRAFT_4463 0.76 -2.2
31,443 - EX28DRAFT_4463 0.76 -0.1
31,443 - EX28DRAFT_4463 0.76 -2.5
31,443 - EX28DRAFT_4463 0.76 -1.8
31,463 + EX28DRAFT_4463 0.79 -1.9
31,464 - EX28DRAFT_4463 0.79 -3.3
31,641 - -0.4
31,675 - +1.7
31,754 - -1.1
31,754 - +0.5
31,754 - +0.6
31,783 - +0.3
31,838 + +0.6
31,838 + -0.6
31,874 + -2.8
31,960 + EX28DRAFT_4464 0.10 -0.9
31,961 - EX28DRAFT_4464 0.10 +1.0
31,961 - EX28DRAFT_4464 0.10 +0.0
31,962 + EX28DRAFT_4464 0.11 -0.1
31,963 - EX28DRAFT_4464 0.11 -1.1
31,963 - EX28DRAFT_4464 0.11 +0.9
32,062 + EX28DRAFT_4464 0.18 +1.0
32,063 - EX28DRAFT_4464 0.18 -3.8
32,064 + EX28DRAFT_4464 0.18 -0.7
32,064 + EX28DRAFT_4464 0.18 +1.7
32,064 + EX28DRAFT_4464 0.18 +0.7
32,065 - EX28DRAFT_4464 0.18 +0.3
32,065 - EX28DRAFT_4464 0.18 -0.1
32,109 + EX28DRAFT_4464 0.21 +0.5
32,109 + EX28DRAFT_4464 0.21 +0.8
32,110 - EX28DRAFT_4464 0.21 +1.0
32,156 - EX28DRAFT_4464 0.25 +0.9
32,452 + EX28DRAFT_4464 0.46 +0.0
32,475 + EX28DRAFT_4464 0.48 -1.5

Or see this region's nucleotide sequence