Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4399

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4398 and EX28DRAFT_4399 are separated by 173 nucleotidesEX28DRAFT_4399 and EX28DRAFT_4400 are separated by 21 nucleotides EX28DRAFT_4398: EX28DRAFT_4398 - fructose-1,6-bisphosphatase, class II, at 60,354 to 61,364 _4398 EX28DRAFT_4399: EX28DRAFT_4399 - glycerol kinase, at 61,538 to 63,046 _4399 EX28DRAFT_4400: EX28DRAFT_4400 - MIP family channel proteins, at 63,068 to 63,913 _4400 Position (kb) 61 62 63 64Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 60.572 kb on + strand, within EX28DRAFT_4398at 60.894 kb on - strand, within EX28DRAFT_4398at 61.009 kb on + strand, within EX28DRAFT_4398at 61.009 kb on + strand, within EX28DRAFT_4398at 61.010 kb on - strand, within EX28DRAFT_4398at 61.010 kb on - strand, within EX28DRAFT_4398at 61.010 kb on - strand, within EX28DRAFT_4398at 61.010 kb on - strand, within EX28DRAFT_4398at 61.010 kb on - strand, within EX28DRAFT_4398at 61.013 kb on + strand, within EX28DRAFT_4398at 61.121 kb on + strand, within EX28DRAFT_4398at 61.122 kb on - strand, within EX28DRAFT_4398at 61.122 kb on - strand, within EX28DRAFT_4398at 61.125 kb on + strand, within EX28DRAFT_4398at 61.165 kb on + strand, within EX28DRAFT_4398at 61.166 kb on - strand, within EX28DRAFT_4398at 61.166 kb on - strand, within EX28DRAFT_4398at 61.166 kb on - strand, within EX28DRAFT_4398at 61.301 kb on + strandat 61.301 kb on + strandat 61.301 kb on + strandat 61.302 kb on - strandat 61.302 kb on - strandat 61.302 kb on - strandat 61.487 kb on - strandat 61.539 kb on + strandat 61.607 kb on - strandat 61.799 kb on - strand, within EX28DRAFT_4399at 61.887 kb on + strand, within EX28DRAFT_4399at 62.016 kb on + strand, within EX28DRAFT_4399at 62.016 kb on + strand, within EX28DRAFT_4399at 62.016 kb on + strand, within EX28DRAFT_4399at 62.017 kb on - strand, within EX28DRAFT_4399at 62.053 kb on - strand, within EX28DRAFT_4399at 62.145 kb on + strand, within EX28DRAFT_4399at 62.233 kb on + strand, within EX28DRAFT_4399at 62.233 kb on + strand, within EX28DRAFT_4399at 62.250 kb on + strand, within EX28DRAFT_4399at 62.250 kb on + strand, within EX28DRAFT_4399at 62.250 kb on + strand, within EX28DRAFT_4399at 62.251 kb on - strand, within EX28DRAFT_4399at 62.363 kb on - strand, within EX28DRAFT_4399at 62.497 kb on - strand, within EX28DRAFT_4399at 62.578 kb on + strand, within EX28DRAFT_4399at 62.600 kb on + strand, within EX28DRAFT_4399at 62.640 kb on + strand, within EX28DRAFT_4399at 62.677 kb on - strand, within EX28DRAFT_4399at 62.677 kb on - strand, within EX28DRAFT_4399at 62.751 kb on + strand, within EX28DRAFT_4399at 62.752 kb on - strand, within EX28DRAFT_4399at 62.755 kb on + strand, within EX28DRAFT_4399at 62.755 kb on + strand, within EX28DRAFT_4399at 63.049 kb on + strandat 63.049 kb on + strandat 63.049 kb on + strandat 63.049 kb on + strandat 63.050 kb on - strandat 63.050 kb on - strandat 63.050 kb on - strandat 63.138 kb on - strandat 63.152 kb on + strandat 63.153 kb on - strand, within EX28DRAFT_4400at 63.166 kb on + strand, within EX28DRAFT_4400at 63.166 kb on + strand, within EX28DRAFT_4400at 63.166 kb on + strand, within EX28DRAFT_4400at 63.167 kb on - strand, within EX28DRAFT_4400at 63.219 kb on + strand, within EX28DRAFT_4400at 63.553 kb on + strand, within EX28DRAFT_4400at 63.553 kb on + strand, within EX28DRAFT_4400at 63.587 kb on - strand, within EX28DRAFT_4400at 63.588 kb on + strand, within EX28DRAFT_4400at 63.588 kb on + strand, within EX28DRAFT_4400at 63.589 kb on - strand, within EX28DRAFT_4400at 63.591 kb on + strand, within EX28DRAFT_4400at 63.592 kb on - strand, within EX28DRAFT_4400at 63.600 kb on + strand, within EX28DRAFT_4400at 63.656 kb on + strand, within EX28DRAFT_4400at 63.657 kb on - strand, within EX28DRAFT_4400at 63.657 kb on - strand, within EX28DRAFT_4400at 63.744 kb on + strand, within EX28DRAFT_4400at 63.744 kb on + strand, within EX28DRAFT_4400at 63.744 kb on + strand, within EX28DRAFT_4400at 63.745 kb on - strand, within EX28DRAFT_4400at 63.778 kb on + strand, within EX28DRAFT_4400at 63.893 kb on + strandat 63.948 kb on - strandat 63.948 kb on - strandat 63.988 kb on - strandat 63.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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60,572 + EX28DRAFT_4398 0.22 +0.0
60,894 - EX28DRAFT_4398 0.53 +0.5
61,009 + EX28DRAFT_4398 0.65 -0.4
61,009 + EX28DRAFT_4398 0.65 -0.2
61,010 - EX28DRAFT_4398 0.65 -1.8
61,010 - EX28DRAFT_4398 0.65 +1.1
61,010 - EX28DRAFT_4398 0.65 -0.2
61,010 - EX28DRAFT_4398 0.65 +1.6
61,010 - EX28DRAFT_4398 0.65 +0.6
61,013 + EX28DRAFT_4398 0.65 +1.4
61,121 + EX28DRAFT_4398 0.76 +1.0
61,122 - EX28DRAFT_4398 0.76 -0.9
61,122 - EX28DRAFT_4398 0.76 +0.3
61,125 + EX28DRAFT_4398 0.76 +0.5
61,165 + EX28DRAFT_4398 0.80 +0.7
61,166 - EX28DRAFT_4398 0.80 +0.1
61,166 - EX28DRAFT_4398 0.80 +0.6
61,166 - EX28DRAFT_4398 0.80 -0.5
61,301 + +0.3
61,301 + +2.0
61,301 + +0.5
61,302 - -0.3
61,302 - -1.1
61,302 - -0.5
61,487 - +1.7
61,539 + -3.1
61,607 - +0.1
61,799 - EX28DRAFT_4399 0.17 +0.8
61,887 + EX28DRAFT_4399 0.23 +2.1
62,016 + EX28DRAFT_4399 0.32 +0.2
62,016 + EX28DRAFT_4399 0.32 +0.5
62,016 + EX28DRAFT_4399 0.32 +0.8
62,017 - EX28DRAFT_4399 0.32 +1.8
62,053 - EX28DRAFT_4399 0.34 -0.0
62,145 + EX28DRAFT_4399 0.40 -1.4
62,233 + EX28DRAFT_4399 0.46 -1.4
62,233 + EX28DRAFT_4399 0.46 +0.7
62,250 + EX28DRAFT_4399 0.47 +1.5
62,250 + EX28DRAFT_4399 0.47 -1.7
62,250 + EX28DRAFT_4399 0.47 -1.8
62,251 - EX28DRAFT_4399 0.47 +0.7
62,363 - EX28DRAFT_4399 0.55 +0.4
62,497 - EX28DRAFT_4399 0.64 -0.2
62,578 + EX28DRAFT_4399 0.69 +0.2
62,600 + EX28DRAFT_4399 0.70 +0.0
62,640 + EX28DRAFT_4399 0.73 +0.2
62,677 - EX28DRAFT_4399 0.75 +0.8
62,677 - EX28DRAFT_4399 0.75 -1.8
62,751 + EX28DRAFT_4399 0.80 +0.8
62,752 - EX28DRAFT_4399 0.80 +0.0
62,755 + EX28DRAFT_4399 0.81 +0.9
62,755 + EX28DRAFT_4399 0.81 +1.3
63,049 + +0.1
63,049 + +0.8
63,049 + +0.3
63,049 + +0.9
63,050 - -0.6
63,050 - -0.3
63,050 - -0.2
63,138 - -0.8
63,152 + -2.0
63,153 - EX28DRAFT_4400 0.10 +0.4
63,166 + EX28DRAFT_4400 0.12 +0.7
63,166 + EX28DRAFT_4400 0.12 +0.8
63,166 + EX28DRAFT_4400 0.12 +1.0
63,167 - EX28DRAFT_4400 0.12 -1.4
63,219 + EX28DRAFT_4400 0.18 +1.2
63,553 + EX28DRAFT_4400 0.57 +2.3
63,553 + EX28DRAFT_4400 0.57 -1.9
63,587 - EX28DRAFT_4400 0.61 -0.1
63,588 + EX28DRAFT_4400 0.61 +1.6
63,588 + EX28DRAFT_4400 0.61 +0.7
63,589 - EX28DRAFT_4400 0.62 -0.8
63,591 + EX28DRAFT_4400 0.62 +0.6
63,592 - EX28DRAFT_4400 0.62 -0.3
63,600 + EX28DRAFT_4400 0.63 -1.6
63,656 + EX28DRAFT_4400 0.70 +2.3
63,657 - EX28DRAFT_4400 0.70 -0.5
63,657 - EX28DRAFT_4400 0.70 -2.3
63,744 + EX28DRAFT_4400 0.80 -0.5
63,744 + EX28DRAFT_4400 0.80 +0.1
63,744 + EX28DRAFT_4400 0.80 +1.2
63,745 - EX28DRAFT_4400 0.80 +0.4
63,778 + EX28DRAFT_4400 0.84 +0.5
63,893 + -0.1
63,948 - +0.5
63,948 - +0.8
63,988 - -0.9
63,988 - +1.1

Or see this region's nucleotide sequence