Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4375 and EX28DRAFT_4376 overlap by 4 nucleotides EX28DRAFT_4376 and EX28DRAFT_4377 are separated by 12 nucleotides EX28DRAFT_4377 and EX28DRAFT_4378 overlap by 641 nucleotides EX28DRAFT_4378 and EX28DRAFT_4379 are separated by 955 nucleotides
EX28DRAFT_4375: EX28DRAFT_4375 - formate dehydrogenase, gamma subunit, at 39,614 to 40,249
_4375
EX28DRAFT_4376: EX28DRAFT_4376 - formate dehydrogenase, beta subunit, Fe-S containing, at 40,246 to 41,148
_4376
EX28DRAFT_4377: EX28DRAFT_4377 - formate dehydrogenase (quinone-dependent) catalytic subunit, at 41,161 to 44,211
_4377
EX28DRAFT_4378: EX28DRAFT_4378 - RNA, at 43,571 to 43,629
_4378
EX28DRAFT_4379: EX28DRAFT_4379 - formate dehydrogenase family accessory protein FdhD, at 44,585 to 45,421
_4379
Position (kb) 41
42
43
44
45 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 40.221 kb on + strand at 40.323 kb on - strand at 40.472 kb on + strand, within EX28DRAFT_4376 at 40.473 kb on - strand, within EX28DRAFT_4376 at 40.473 kb on - strand, within EX28DRAFT_4376 at 40.575 kb on + strand, within EX28DRAFT_4376 at 40.576 kb on - strand, within EX28DRAFT_4376 at 40.787 kb on + strand, within EX28DRAFT_4376 at 40.788 kb on - strand, within EX28DRAFT_4376 at 40.848 kb on + strand, within EX28DRAFT_4376 at 40.848 kb on + strand, within EX28DRAFT_4376 at 40.849 kb on - strand, within EX28DRAFT_4376 at 40.849 kb on - strand, within EX28DRAFT_4376 at 40.952 kb on + strand, within EX28DRAFT_4376 at 40.953 kb on - strand, within EX28DRAFT_4376 at 40.953 kb on - strand, within EX28DRAFT_4376 at 41.023 kb on - strand, within EX28DRAFT_4376 at 41.141 kb on + strand at 41.142 kb on - strand at 41.149 kb on - strand at 41.277 kb on - strand at 41.370 kb on + strand at 41.370 kb on + strand at 41.371 kb on - strand at 41.371 kb on - strand at 41.502 kb on - strand, within EX28DRAFT_4377 at 41.661 kb on - strand, within EX28DRAFT_4377 at 41.691 kb on + strand, within EX28DRAFT_4377 at 41.691 kb on + strand, within EX28DRAFT_4377 at 41.873 kb on + strand, within EX28DRAFT_4377 at 42.167 kb on + strand, within EX28DRAFT_4377 at 42.221 kb on + strand, within EX28DRAFT_4377 at 42.221 kb on + strand, within EX28DRAFT_4377 at 42.221 kb on + strand, within EX28DRAFT_4377 at 42.222 kb on - strand, within EX28DRAFT_4377 at 42.228 kb on + strand, within EX28DRAFT_4377 at 42.228 kb on + strand, within EX28DRAFT_4377 at 42.238 kb on + strand, within EX28DRAFT_4377 at 42.238 kb on + strand, within EX28DRAFT_4377 at 42.239 kb on - strand, within EX28DRAFT_4377 at 42.594 kb on - strand, within EX28DRAFT_4377 at 42.594 kb on - strand, within EX28DRAFT_4377 at 42.608 kb on + strand, within EX28DRAFT_4377 at 42.711 kb on - strand, within EX28DRAFT_4377 at 42.722 kb on + strand, within EX28DRAFT_4377 at 42.727 kb on + strand, within EX28DRAFT_4377 at 42.727 kb on + strand, within EX28DRAFT_4377 at 42.728 kb on - strand, within EX28DRAFT_4377 at 42.771 kb on - strand, within EX28DRAFT_4377 at 42.771 kb on - strand, within EX28DRAFT_4377 at 42.812 kb on + strand, within EX28DRAFT_4377 at 42.942 kb on + strand, within EX28DRAFT_4377 at 43.032 kb on + strand, within EX28DRAFT_4377 at 43.236 kb on - strand, within EX28DRAFT_4377 at 43.298 kb on + strand, within EX28DRAFT_4377 at 43.299 kb on - strand, within EX28DRAFT_4377 at 43.311 kb on - strand, within EX28DRAFT_4377 at 43.344 kb on - strand, within EX28DRAFT_4377 at 43.397 kb on + strand, within EX28DRAFT_4377 at 43.398 kb on - strand, within EX28DRAFT_4377 at 43.398 kb on - strand, within EX28DRAFT_4377 at 43.800 kb on + strand, within EX28DRAFT_4377 at 43.800 kb on + strand, within EX28DRAFT_4377 at 43.804 kb on - strand, within EX28DRAFT_4377 at 43.804 kb on - strand, within EX28DRAFT_4377 at 43.804 kb on - strand, within EX28DRAFT_4377 at 43.990 kb on - strand at 44.007 kb on + strand at 44.026 kb on - strand at 44.027 kb on + strand at 44.027 kb on + strand at 44.027 kb on + strand at 44.027 kb on + strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.028 kb on - strand at 44.058 kb on - strand at 44.062 kb on - strand at 44.067 kb on + strand at 44.067 kb on + strand at 44.067 kb on + strand at 44.068 kb on - strand at 44.071 kb on - strand at 44.097 kb on + strand at 44.097 kb on + strand at 44.097 kb on + strand at 44.099 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.238 kb on + strand at 44.239 kb on - strand at 44.239 kb on - strand at 44.239 kb on - strand at 44.239 kb on - strand at 44.242 kb on + strand at 44.242 kb on + strand at 44.242 kb on + strand at 44.242 kb on + strand at 44.242 kb on + strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.243 kb on - strand at 44.246 kb on + strand at 44.246 kb on + strand at 44.247 kb on - strand at 44.247 kb on - strand at 44.252 kb on + strand at 44.357 kb on - strand at 44.381 kb on + strand at 44.382 kb on - strand at 44.382 kb on - strand at 44.382 kb on - strand at 44.382 kb on - strand at 44.449 kb on + strand at 44.466 kb on + strand at 44.467 kb on - strand at 44.483 kb on + strand at 44.487 kb on + strand at 44.514 kb on + strand at 44.515 kb on - strand at 44.515 kb on - strand at 44.517 kb on + strand at 44.518 kb on - strand at 44.518 kb on - strand at 44.523 kb on + strand at 44.523 kb on + strand at 44.547 kb on + strand at 44.635 kb on - strand at 44.828 kb on + strand, within EX28DRAFT_4379 at 44.829 kb on - strand, within EX28DRAFT_4379 at 44.829 kb on - strand, within EX28DRAFT_4379 at 45.060 kb on + strand, within EX28DRAFT_4379 at 45.060 kb on + strand, within EX28DRAFT_4379
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 40,221 + +0.2 40,323 - -2.0 40,472 + EX28DRAFT_4376 0.25 -0.6 40,473 - EX28DRAFT_4376 0.25 -0.3 40,473 - EX28DRAFT_4376 0.25 -0.8 40,575 + EX28DRAFT_4376 0.36 -1.1 40,576 - EX28DRAFT_4376 0.37 +1.0 40,787 + EX28DRAFT_4376 0.60 +1.2 40,788 - EX28DRAFT_4376 0.60 +0.5 40,848 + EX28DRAFT_4376 0.67 -2.0 40,848 + EX28DRAFT_4376 0.67 -0.5 40,849 - EX28DRAFT_4376 0.67 -0.9 40,849 - EX28DRAFT_4376 0.67 -0.2 40,952 + EX28DRAFT_4376 0.78 +0.1 40,953 - EX28DRAFT_4376 0.78 -0.6 40,953 - EX28DRAFT_4376 0.78 -2.9 41,023 - EX28DRAFT_4376 0.86 +1.4 41,141 + -0.6 41,142 - -0.6 41,149 - +1.2 41,277 - -0.0 41,370 + -0.7 41,370 + +0.1 41,371 - +0.8 41,371 - -0.9 41,502 - EX28DRAFT_4377 0.11 +0.5 41,661 - EX28DRAFT_4377 0.16 +0.4 41,691 + EX28DRAFT_4377 0.17 -0.3 41,691 + EX28DRAFT_4377 0.17 -1.3 41,873 + EX28DRAFT_4377 0.23 -0.1 42,167 + EX28DRAFT_4377 0.33 +2.3 42,221 + EX28DRAFT_4377 0.35 +0.1 42,221 + EX28DRAFT_4377 0.35 -1.9 42,221 + EX28DRAFT_4377 0.35 -0.6 42,222 - EX28DRAFT_4377 0.35 -0.4 42,228 + EX28DRAFT_4377 0.35 -0.5 42,228 + EX28DRAFT_4377 0.35 -0.4 42,238 + EX28DRAFT_4377 0.35 -0.6 42,238 + EX28DRAFT_4377 0.35 +0.8 42,239 - EX28DRAFT_4377 0.35 -0.4 42,594 - EX28DRAFT_4377 0.47 -0.3 42,594 - EX28DRAFT_4377 0.47 -3.3 42,608 + EX28DRAFT_4377 0.47 -0.2 42,711 - EX28DRAFT_4377 0.51 -1.5 42,722 + EX28DRAFT_4377 0.51 -0.2 42,727 + EX28DRAFT_4377 0.51 +0.5 42,727 + EX28DRAFT_4377 0.51 -0.3 42,728 - EX28DRAFT_4377 0.51 -0.2 42,771 - EX28DRAFT_4377 0.53 +0.5 42,771 - EX28DRAFT_4377 0.53 +1.7 42,812 + EX28DRAFT_4377 0.54 +2.3 42,942 + EX28DRAFT_4377 0.58 -0.6 43,032 + EX28DRAFT_4377 0.61 -0.6 43,236 - EX28DRAFT_4377 0.68 +0.2 43,298 + EX28DRAFT_4377 0.70 -1.7 43,299 - EX28DRAFT_4377 0.70 +0.3 43,311 - EX28DRAFT_4377 0.70 -0.6 43,344 - EX28DRAFT_4377 0.72 +1.5 43,397 + EX28DRAFT_4377 0.73 -1.3 43,398 - EX28DRAFT_4377 0.73 +0.5 43,398 - EX28DRAFT_4377 0.73 +0.3 43,800 + EX28DRAFT_4377 0.86 +0.3 43,800 + EX28DRAFT_4377 0.86 +0.3 43,804 - EX28DRAFT_4377 0.87 -1.0 43,804 - EX28DRAFT_4377 0.87 -0.7 43,804 - EX28DRAFT_4377 0.87 -2.8 43,990 - -0.3 44,007 + +0.1 44,026 - -0.1 44,027 + -0.6 44,027 + +0.4 44,027 + +0.1 44,027 + -0.2 44,028 - +0.5 44,028 - +0.3 44,028 - -0.3 44,028 - +0.1 44,028 - -0.1 44,028 - +0.8 44,028 - +1.0 44,028 - -0.2 44,058 - +1.1 44,062 - +0.4 44,067 + +0.3 44,067 + -2.2 44,067 + -1.4 44,068 - -1.1 44,071 - +0.9 44,097 + +0.7 44,097 + +1.6 44,097 + -2.8 44,099 + +0.5 44,238 + +0.9 44,238 + -0.7 44,238 + +0.6 44,238 + +1.0 44,238 + +0.3 44,238 + -0.8 44,238 + +0.1 44,238 + +0.0 44,239 - +0.0 44,239 - +0.2 44,239 - +0.8 44,239 - -0.2 44,242 + +0.3 44,242 + -2.0 44,242 + -1.1 44,242 + +1.3 44,242 + +0.3 44,243 - -2.8 44,243 - +0.2 44,243 - +1.0 44,243 - -1.8 44,243 - +1.3 44,243 - +1.3 44,243 - +0.1 44,243 - +1.8 44,243 - +2.0 44,243 - +0.9 44,246 + -0.5 44,246 + -0.3 44,247 - -1.0 44,247 - +0.7 44,252 + -0.7 44,357 - +1.7 44,381 + -0.8 44,382 - +0.5 44,382 - -0.6 44,382 - -0.1 44,382 - +2.4 44,449 + -0.7 44,466 + -1.4 44,467 - -2.6 44,483 + +0.5 44,487 + -1.2 44,514 + -0.4 44,515 - +0.1 44,515 - -0.4 44,517 + -0.4 44,518 - -0.1 44,518 - +0.5 44,523 + -0.1 44,523 + +0.2 44,547 + -0.6 44,635 - +0.9 44,828 + EX28DRAFT_4379 0.29 -1.3 44,829 - EX28DRAFT_4379 0.29 -0.6 44,829 - EX28DRAFT_4379 0.29 -0.4 45,060 + EX28DRAFT_4379 0.57 -3.9 45,060 + EX28DRAFT_4379 0.57 +0.0
Or see this region's nucleotide sequence