Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4370

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4368 and EX28DRAFT_4369 overlap by 4 nucleotidesEX28DRAFT_4369 and EX28DRAFT_4370 are separated by 44 nucleotidesEX28DRAFT_4370 and EX28DRAFT_4371 are separated by 8 nucleotides EX28DRAFT_4368: EX28DRAFT_4368 - Predicted membrane protein, at 34,602 to 35,483 _4368 EX28DRAFT_4369: EX28DRAFT_4369 - D-tyrosyl-tRNA(Tyr) deacylase, at 35,480 to 35,917 _4369 EX28DRAFT_4370: EX28DRAFT_4370 - thioesterase domain, putative, at 35,962 to 36,903 _4370 EX28DRAFT_4371: EX28DRAFT_4371 - Esterase/lipase, at 36,912 to 37,832 _4371 Position (kb) 35 36 37Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 34.991 kb on + strand, within EX28DRAFT_4368at 35.013 kb on + strand, within EX28DRAFT_4368at 35.088 kb on + strand, within EX28DRAFT_4368at 35.089 kb on - strand, within EX28DRAFT_4368at 35.089 kb on - strand, within EX28DRAFT_4368at 35.190 kb on + strand, within EX28DRAFT_4368at 35.292 kb on + strand, within EX28DRAFT_4368at 35.292 kb on + strand, within EX28DRAFT_4368at 35.293 kb on - strand, within EX28DRAFT_4368at 35.368 kb on - strand, within EX28DRAFT_4368at 35.404 kb on + strandat 35.405 kb on - strandat 35.435 kb on + strandat 35.493 kb on + strandat 35.571 kb on + strand, within EX28DRAFT_4369at 35.571 kb on + strand, within EX28DRAFT_4369at 35.571 kb on + strand, within EX28DRAFT_4369at 35.572 kb on - strand, within EX28DRAFT_4369at 35.638 kb on + strand, within EX28DRAFT_4369at 35.717 kb on - strand, within EX28DRAFT_4369at 35.802 kb on - strand, within EX28DRAFT_4369at 35.863 kb on + strand, within EX28DRAFT_4369at 35.863 kb on + strand, within EX28DRAFT_4369at 35.863 kb on + strand, within EX28DRAFT_4369at 35.956 kb on - strandat 35.956 kb on - strandat 35.956 kb on - strandat 35.961 kb on + strandat 35.961 kb on + strandat 35.962 kb on - strandat 35.962 kb on - strandat 35.962 kb on - strandat 35.965 kb on + strandat 35.965 kb on + strandat 35.965 kb on + strandat 35.966 kb on - strandat 35.966 kb on - strandat 36.010 kb on + strandat 36.010 kb on + strandat 36.011 kb on - strandat 36.145 kb on + strand, within EX28DRAFT_4370at 36.145 kb on + strand, within EX28DRAFT_4370at 36.146 kb on - strand, within EX28DRAFT_4370at 36.146 kb on - strand, within EX28DRAFT_4370at 36.146 kb on - strand, within EX28DRAFT_4370at 36.225 kb on - strand, within EX28DRAFT_4370at 36.411 kb on + strand, within EX28DRAFT_4370at 36.411 kb on + strand, within EX28DRAFT_4370at 36.412 kb on - strand, within EX28DRAFT_4370at 36.505 kb on + strand, within EX28DRAFT_4370at 36.506 kb on - strand, within EX28DRAFT_4370at 36.506 kb on - strand, within EX28DRAFT_4370at 36.522 kb on + strand, within EX28DRAFT_4370at 36.687 kb on + strand, within EX28DRAFT_4370at 36.783 kb on - strand, within EX28DRAFT_4370at 36.842 kb on - strandat 36.842 kb on - strandat 36.842 kb on - strandat 36.842 kb on - strandat 36.842 kb on - strandat 36.842 kb on - strandat 36.842 kb on - strandat 36.901 kb on + strandat 36.932 kb on + strandat 36.933 kb on - strandat 36.933 kb on - strandat 37.063 kb on + strand, within EX28DRAFT_4371at 37.064 kb on - strand, within EX28DRAFT_4371at 37.064 kb on - strand, within EX28DRAFT_4371at 37.097 kb on - strand, within EX28DRAFT_4371at 37.230 kb on - strand, within EX28DRAFT_4371at 37.232 kb on + strand, within EX28DRAFT_4371at 37.232 kb on + strand, within EX28DRAFT_4371at 37.232 kb on + strand, within EX28DRAFT_4371at 37.232 kb on + strand, within EX28DRAFT_4371at 37.232 kb on + strand, within EX28DRAFT_4371at 37.232 kb on + strand, within EX28DRAFT_4371at 37.232 kb on + strand, within EX28DRAFT_4371at 37.232 kb on + strand, within EX28DRAFT_4371at 37.232 kb on + strand, within EX28DRAFT_4371at 37.233 kb on - strand, within EX28DRAFT_4371at 37.233 kb on - strand, within EX28DRAFT_4371at 37.233 kb on - strand, within EX28DRAFT_4371at 37.233 kb on - strand, within EX28DRAFT_4371at 37.235 kb on - strand, within EX28DRAFT_4371at 37.248 kb on - strand, within EX28DRAFT_4371at 37.255 kb on + strand, within EX28DRAFT_4371at 37.255 kb on + strand, within EX28DRAFT_4371at 37.291 kb on + strand, within EX28DRAFT_4371at 37.294 kb on - strand, within EX28DRAFT_4371at 37.295 kb on + strand, within EX28DRAFT_4371at 37.296 kb on - strand, within EX28DRAFT_4371at 37.296 kb on - strand, within EX28DRAFT_4371at 37.296 kb on - strand, within EX28DRAFT_4371at 37.296 kb on - strand, within EX28DRAFT_4371at 37.296 kb on - strand, within EX28DRAFT_4371at 37.301 kb on + strand, within EX28DRAFT_4371at 37.301 kb on + strand, within EX28DRAFT_4371at 37.302 kb on - strand, within EX28DRAFT_4371at 37.308 kb on + strand, within EX28DRAFT_4371at 37.309 kb on - strand, within EX28DRAFT_4371at 37.403 kb on + strand, within EX28DRAFT_4371at 37.404 kb on - strand, within EX28DRAFT_4371at 37.404 kb on - strand, within EX28DRAFT_4371at 37.404 kb on - strand, within EX28DRAFT_4371at 37.481 kb on + strand, within EX28DRAFT_4371at 37.482 kb on - strand, within EX28DRAFT_4371at 37.482 kb on - strand, within EX28DRAFT_4371at 37.482 kb on - strand, within EX28DRAFT_4371at 37.482 kb on - strand, within EX28DRAFT_4371at 37.532 kb on - strand, within EX28DRAFT_4371at 37.583 kb on + strand, within EX28DRAFT_4371at 37.600 kb on + strand, within EX28DRAFT_4371at 37.603 kb on + strand, within EX28DRAFT_4371at 37.603 kb on + strand, within EX28DRAFT_4371at 37.604 kb on - strand, within EX28DRAFT_4371at 37.604 kb on - strand, within EX28DRAFT_4371at 37.634 kb on + strand, within EX28DRAFT_4371at 37.635 kb on - strand, within EX28DRAFT_4371at 37.635 kb on - strand, within EX28DRAFT_4371at 37.732 kb on + strand, within EX28DRAFT_4371at 37.732 kb on + strand, within EX28DRAFT_4371at 37.732 kb on + strand, within EX28DRAFT_4371at 37.733 kb on - strand, within EX28DRAFT_4371at 37.859 kb on + strandat 37.860 kb on - strandat 37.879 kb on + strandat 37.880 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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34,991 + EX28DRAFT_4368 0.44 +1.8
35,013 + EX28DRAFT_4368 0.47 -3.4
35,088 + EX28DRAFT_4368 0.55 -2.5
35,089 - EX28DRAFT_4368 0.55 +0.1
35,089 - EX28DRAFT_4368 0.55 +1.0
35,190 + EX28DRAFT_4368 0.67 -0.7
35,292 + EX28DRAFT_4368 0.78 -0.0
35,292 + EX28DRAFT_4368 0.78 +1.1
35,293 - EX28DRAFT_4368 0.78 -1.6
35,368 - EX28DRAFT_4368 0.87 -1.5
35,404 + +1.1
35,405 - +0.2
35,435 + +0.3
35,493 + +0.2
35,571 + EX28DRAFT_4369 0.21 +1.0
35,571 + EX28DRAFT_4369 0.21 +0.3
35,571 + EX28DRAFT_4369 0.21 -1.3
35,572 - EX28DRAFT_4369 0.21 +0.3
35,638 + EX28DRAFT_4369 0.36 +0.0
35,717 - EX28DRAFT_4369 0.54 +3.9
35,802 - EX28DRAFT_4369 0.74 +1.2
35,863 + EX28DRAFT_4369 0.87 +1.1
35,863 + EX28DRAFT_4369 0.87 +0.9
35,863 + EX28DRAFT_4369 0.87 +1.1
35,956 - -1.4
35,956 - -0.8
35,956 - -0.2
35,961 + +2.3
35,961 + +0.6
35,962 - +0.8
35,962 - -0.3
35,962 - +0.8
35,965 + +1.0
35,965 + -2.4
35,965 + -0.3
35,966 - -0.6
35,966 - +0.0
36,010 + +0.2
36,010 + +0.2
36,011 - -1.2
36,145 + EX28DRAFT_4370 0.19 +0.6
36,145 + EX28DRAFT_4370 0.19 -1.4
36,146 - EX28DRAFT_4370 0.20 +2.3
36,146 - EX28DRAFT_4370 0.20 -2.6
36,146 - EX28DRAFT_4370 0.20 -0.4
36,225 - EX28DRAFT_4370 0.28 +0.1
36,411 + EX28DRAFT_4370 0.48 -0.8
36,411 + EX28DRAFT_4370 0.48 -1.4
36,412 - EX28DRAFT_4370 0.48 -1.5
36,505 + EX28DRAFT_4370 0.58 -0.4
36,506 - EX28DRAFT_4370 0.58 -0.7
36,506 - EX28DRAFT_4370 0.58 -0.4
36,522 + EX28DRAFT_4370 0.59 -0.4
36,687 + EX28DRAFT_4370 0.77 -0.5
36,783 - EX28DRAFT_4370 0.87 +0.7
36,842 - +0.3
36,842 - -1.9
36,842 - +0.7
36,842 - +0.4
36,842 - -0.8
36,842 - -0.1
36,842 - +0.9
36,901 + +0.4
36,932 + +2.6
36,933 - +0.9
36,933 - +1.1
37,063 + EX28DRAFT_4371 0.16 +0.3
37,064 - EX28DRAFT_4371 0.17 -0.2
37,064 - EX28DRAFT_4371 0.17 -1.3
37,097 - EX28DRAFT_4371 0.20 +0.8
37,230 - EX28DRAFT_4371 0.35 +0.4
37,232 + EX28DRAFT_4371 0.35 +1.2
37,232 + EX28DRAFT_4371 0.35 +0.3
37,232 + EX28DRAFT_4371 0.35 -1.0
37,232 + EX28DRAFT_4371 0.35 +1.3
37,232 + EX28DRAFT_4371 0.35 +0.8
37,232 + EX28DRAFT_4371 0.35 +0.8
37,232 + EX28DRAFT_4371 0.35 -0.3
37,232 + EX28DRAFT_4371 0.35 -2.8
37,232 + EX28DRAFT_4371 0.35 +0.2
37,233 - EX28DRAFT_4371 0.35 -0.5
37,233 - EX28DRAFT_4371 0.35 +1.1
37,233 - EX28DRAFT_4371 0.35 +0.2
37,233 - EX28DRAFT_4371 0.35 +0.1
37,235 - EX28DRAFT_4371 0.35 +3.3
37,248 - EX28DRAFT_4371 0.36 +1.2
37,255 + EX28DRAFT_4371 0.37 -0.3
37,255 + EX28DRAFT_4371 0.37 -0.6
37,291 + EX28DRAFT_4371 0.41 +0.3
37,294 - EX28DRAFT_4371 0.41 +2.3
37,295 + EX28DRAFT_4371 0.42 -0.2
37,296 - EX28DRAFT_4371 0.42 -0.0
37,296 - EX28DRAFT_4371 0.42 +0.6
37,296 - EX28DRAFT_4371 0.42 +0.7
37,296 - EX28DRAFT_4371 0.42 +0.3
37,296 - EX28DRAFT_4371 0.42 -0.2
37,301 + EX28DRAFT_4371 0.42 +0.3
37,301 + EX28DRAFT_4371 0.42 +0.3
37,302 - EX28DRAFT_4371 0.42 -0.0
37,308 + EX28DRAFT_4371 0.43 -1.0
37,309 - EX28DRAFT_4371 0.43 +0.1
37,403 + EX28DRAFT_4371 0.53 -0.3
37,404 - EX28DRAFT_4371 0.53 -3.7
37,404 - EX28DRAFT_4371 0.53 +0.3
37,404 - EX28DRAFT_4371 0.53 +2.0
37,481 + EX28DRAFT_4371 0.62 -0.1
37,482 - EX28DRAFT_4371 0.62 +1.7
37,482 - EX28DRAFT_4371 0.62 +2.0
37,482 - EX28DRAFT_4371 0.62 +0.6
37,482 - EX28DRAFT_4371 0.62 +0.2
37,532 - EX28DRAFT_4371 0.67 -1.8
37,583 + EX28DRAFT_4371 0.73 -1.4
37,600 + EX28DRAFT_4371 0.75 -4.0
37,603 + EX28DRAFT_4371 0.75 +0.1
37,603 + EX28DRAFT_4371 0.75 -2.1
37,604 - EX28DRAFT_4371 0.75 -0.1
37,604 - EX28DRAFT_4371 0.75 -0.1
37,634 + EX28DRAFT_4371 0.78 -0.1
37,635 - EX28DRAFT_4371 0.79 -0.3
37,635 - EX28DRAFT_4371 0.79 +1.0
37,732 + EX28DRAFT_4371 0.89 +0.7
37,732 + EX28DRAFT_4371 0.89 -0.1
37,732 + EX28DRAFT_4371 0.89 -2.2
37,733 - EX28DRAFT_4371 0.89 -2.8
37,859 + +0.9
37,860 - +1.2
37,879 + -1.2
37,880 - -2.3

Or see this region's nucleotide sequence