Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4363 and EX28DRAFT_4364 are separated by 71 nucleotides EX28DRAFT_4364 and EX28DRAFT_4365 are separated by 547 nucleotides
EX28DRAFT_4363: EX28DRAFT_4363 - outer membrane autotransporter barrel domain, at 28,546 to 31,473
_4363
EX28DRAFT_4364: EX28DRAFT_4364 - hypothetical protein, at 31,545 to 32,162
_4364
EX28DRAFT_4365: EX28DRAFT_4365 - DNA-binding winged-HTH domains, at 32,710 to 33,453
_4365
Position (kb) 31
32
33 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 30.605 kb on + strand, within EX28DRAFT_4363 at 30.605 kb on + strand, within EX28DRAFT_4363 at 30.605 kb on + strand, within EX28DRAFT_4363 at 30.606 kb on - strand, within EX28DRAFT_4363 at 30.743 kb on + strand, within EX28DRAFT_4363 at 30.743 kb on + strand, within EX28DRAFT_4363 at 30.743 kb on + strand, within EX28DRAFT_4363 at 30.744 kb on - strand, within EX28DRAFT_4363 at 30.744 kb on - strand, within EX28DRAFT_4363 at 30.798 kb on + strand, within EX28DRAFT_4363 at 30.799 kb on - strand, within EX28DRAFT_4363 at 30.900 kb on - strand, within EX28DRAFT_4363 at 30.917 kb on + strand, within EX28DRAFT_4363 at 30.917 kb on + strand, within EX28DRAFT_4363 at 30.918 kb on - strand, within EX28DRAFT_4363 at 30.918 kb on - strand, within EX28DRAFT_4363 at 30.918 kb on - strand, within EX28DRAFT_4363 at 30.918 kb on - strand, within EX28DRAFT_4363 at 30.921 kb on + strand, within EX28DRAFT_4363 at 30.999 kb on - strand, within EX28DRAFT_4363 at 31.027 kb on - strand, within EX28DRAFT_4363 at 31.053 kb on + strand, within EX28DRAFT_4363 at 31.054 kb on - strand, within EX28DRAFT_4363 at 31.063 kb on - strand, within EX28DRAFT_4363 at 31.090 kb on - strand, within EX28DRAFT_4363 at 31.138 kb on + strand, within EX28DRAFT_4363 at 31.246 kb on - strand at 31.246 kb on - strand at 31.249 kb on - strand at 31.271 kb on + strand at 31.272 kb on - strand at 31.276 kb on - strand at 31.715 kb on + strand, within EX28DRAFT_4364 at 31.777 kb on - strand, within EX28DRAFT_4364 at 31.942 kb on + strand, within EX28DRAFT_4364 at 31.942 kb on + strand, within EX28DRAFT_4364 at 31.943 kb on - strand, within EX28DRAFT_4364 at 32.127 kb on + strand at 32.157 kb on + strand at 32.195 kb on + strand at 32.511 kb on - strand at 32.622 kb on + strand at 32.653 kb on + strand at 32.654 kb on - strand at 32.654 kb on - strand at 32.657 kb on + strand at 32.865 kb on + strand, within EX28DRAFT_4365 at 32.911 kb on - strand, within EX28DRAFT_4365 at 33.033 kb on - strand, within EX28DRAFT_4365 at 33.080 kb on + strand, within EX28DRAFT_4365 at 33.081 kb on - strand, within EX28DRAFT_4365
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 30,605 + EX28DRAFT_4363 0.70 -1.9 30,605 + EX28DRAFT_4363 0.70 +1.2 30,605 + EX28DRAFT_4363 0.70 -0.2 30,606 - EX28DRAFT_4363 0.70 -0.9 30,743 + EX28DRAFT_4363 0.75 +1.2 30,743 + EX28DRAFT_4363 0.75 +0.0 30,743 + EX28DRAFT_4363 0.75 -0.0 30,744 - EX28DRAFT_4363 0.75 +1.5 30,744 - EX28DRAFT_4363 0.75 +0.8 30,798 + EX28DRAFT_4363 0.77 -0.5 30,799 - EX28DRAFT_4363 0.77 -2.7 30,900 - EX28DRAFT_4363 0.80 +1.2 30,917 + EX28DRAFT_4363 0.81 -0.9 30,917 + EX28DRAFT_4363 0.81 +0.3 30,918 - EX28DRAFT_4363 0.81 -1.2 30,918 - EX28DRAFT_4363 0.81 -0.1 30,918 - EX28DRAFT_4363 0.81 -0.4 30,918 - EX28DRAFT_4363 0.81 +0.2 30,921 + EX28DRAFT_4363 0.81 -0.2 30,999 - EX28DRAFT_4363 0.84 +0.6 31,027 - EX28DRAFT_4363 0.85 -0.1 31,053 + EX28DRAFT_4363 0.86 +0.3 31,054 - EX28DRAFT_4363 0.86 +0.1 31,063 - EX28DRAFT_4363 0.86 -0.1 31,090 - EX28DRAFT_4363 0.87 +0.1 31,138 + EX28DRAFT_4363 0.89 +1.1 31,246 - +0.5 31,246 - +0.4 31,249 - +0.4 31,271 + +0.2 31,272 - +3.3 31,276 - +0.8 31,715 + EX28DRAFT_4364 0.28 -0.0 31,777 - EX28DRAFT_4364 0.38 +0.7 31,942 + EX28DRAFT_4364 0.64 +1.4 31,942 + EX28DRAFT_4364 0.64 +0.2 31,943 - EX28DRAFT_4364 0.64 -0.4 32,127 + +1.3 32,157 + -0.1 32,195 + -0.5 32,511 - -1.3 32,622 + +0.9 32,653 + +1.5 32,654 - -0.6 32,654 - -0.7 32,657 + -0.7 32,865 + EX28DRAFT_4365 0.21 +0.2 32,911 - EX28DRAFT_4365 0.27 -0.1 33,033 - EX28DRAFT_4365 0.43 -0.9 33,080 + EX28DRAFT_4365 0.50 +0.8 33,081 - EX28DRAFT_4365 0.50 -1.8
Or see this region's nucleotide sequence