Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4337

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4335 and EX28DRAFT_4336 are separated by 72 nucleotidesEX28DRAFT_4336 and EX28DRAFT_4337 are separated by 99 nucleotidesEX28DRAFT_4337 and EX28DRAFT_4338 overlap by 4 nucleotidesEX28DRAFT_4338 and EX28DRAFT_4339 are separated by 68 nucleotidesEX28DRAFT_4339 and EX28DRAFT_4340 are separated by 75 nucleotides EX28DRAFT_4335: EX28DRAFT_4335 - 23S, at 1 to 101 _4335 EX28DRAFT_4336: EX28DRAFT_4336 - 5S, at 174 to 289 _4336 EX28DRAFT_4337: EX28DRAFT_4337 - molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 389 to 892 _4337 EX28DRAFT_4338: EX28DRAFT_4338 - molybdenum cofactor guanylyltransferase, proteobacterial, at 889 to 1,473 _4338 EX28DRAFT_4339: EX28DRAFT_4339 - Uncharacterized protein conserved in bacteria, at 1,542 to 1,811 _4339 EX28DRAFT_4340: EX28DRAFT_4340 - Putative homoserine kinase type II (protein kinase fold), at 1,887 to 2,873 _4340 Position (kb) 0 1Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 0.296 kb on + strandat 0.304 kb on + strandat 0.336 kb on + strandat 0.471 kb on - strand, within EX28DRAFT_4337at 0.494 kb on + strand, within EX28DRAFT_4337at 0.495 kb on - strand, within EX28DRAFT_4337at 0.495 kb on - strand, within EX28DRAFT_4337at 0.495 kb on - strand, within EX28DRAFT_4337at 0.512 kb on + strand, within EX28DRAFT_4337at 0.577 kb on + strand, within EX28DRAFT_4337at 0.578 kb on - strand, within EX28DRAFT_4337at 0.691 kb on + strand, within EX28DRAFT_4337at 0.692 kb on - strand, within EX28DRAFT_4337at 0.735 kb on + strand, within EX28DRAFT_4337at 0.735 kb on + strand, within EX28DRAFT_4337at 0.735 kb on + strand, within EX28DRAFT_4337at 0.735 kb on + strand, within EX28DRAFT_4337at 0.735 kb on + strand, within EX28DRAFT_4337at 0.736 kb on - strand, within EX28DRAFT_4337at 0.736 kb on - strand, within EX28DRAFT_4337at 0.736 kb on - strand, within EX28DRAFT_4337at 0.736 kb on - strand, within EX28DRAFT_4337at 0.736 kb on - strand, within EX28DRAFT_4337at 0.739 kb on + strand, within EX28DRAFT_4337at 0.740 kb on - strand, within EX28DRAFT_4337at 0.740 kb on - strand, within EX28DRAFT_4337at 0.740 kb on - strand, within EX28DRAFT_4337at 0.740 kb on - strand, within EX28DRAFT_4337at 0.766 kb on + strand, within EX28DRAFT_4337at 0.766 kb on + strand, within EX28DRAFT_4337at 0.767 kb on - strand, within EX28DRAFT_4337at 0.767 kb on - strand, within EX28DRAFT_4337at 0.769 kb on + strand, within EX28DRAFT_4337at 0.770 kb on - strand, within EX28DRAFT_4337at 0.770 kb on - strand, within EX28DRAFT_4337at 0.784 kb on + strand, within EX28DRAFT_4337at 0.835 kb on + strand, within EX28DRAFT_4337at 0.887 kb on + strandat 1.029 kb on - strand, within EX28DRAFT_4338at 1.029 kb on - strand, within EX28DRAFT_4338at 1.100 kb on - strand, within EX28DRAFT_4338at 1.216 kb on + strand, within EX28DRAFT_4338at 1.293 kb on - strand, within EX28DRAFT_4338at 1.293 kb on - strand, within EX28DRAFT_4338at 1.350 kb on + strand, within EX28DRAFT_4338at 1.351 kb on - strand, within EX28DRAFT_4338at 1.477 kb on + strandat 1.489 kb on + strandat 1.490 kb on - strandat 1.509 kb on + strandat 1.522 kb on + strandat 1.550 kb on + strandat 1.695 kb on + strand, within EX28DRAFT_4339at 1.695 kb on + strand, within EX28DRAFT_4339at 1.695 kb on + strand, within EX28DRAFT_4339at 1.704 kb on - strand, within EX28DRAFT_4339at 1.704 kb on - strand, within EX28DRAFT_4339at 1.743 kb on - strand, within EX28DRAFT_4339at 1.769 kb on + strand, within EX28DRAFT_4339at 1.798 kb on + strandat 1.799 kb on - strandat 1.809 kb on + strandat 1.809 kb on + strandat 1.867 kb on + strandat 1.867 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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296 + -1.8
304 + +0.3
336 + +0.9
471 - EX28DRAFT_4337 0.16 +0.9
494 + EX28DRAFT_4337 0.21 -0.0
495 - EX28DRAFT_4337 0.21 -1.3
495 - EX28DRAFT_4337 0.21 -0.4
495 - EX28DRAFT_4337 0.21 +2.6
512 + EX28DRAFT_4337 0.24 +0.3
577 + EX28DRAFT_4337 0.37 +1.6
578 - EX28DRAFT_4337 0.38 +2.0
691 + EX28DRAFT_4337 0.60 +0.3
692 - EX28DRAFT_4337 0.60 +0.9
735 + EX28DRAFT_4337 0.69 -3.0
735 + EX28DRAFT_4337 0.69 -3.3
735 + EX28DRAFT_4337 0.69 +1.3
735 + EX28DRAFT_4337 0.69 -0.1
735 + EX28DRAFT_4337 0.69 +0.7
736 - EX28DRAFT_4337 0.69 +2.5
736 - EX28DRAFT_4337 0.69 +0.7
736 - EX28DRAFT_4337 0.69 +0.9
736 - EX28DRAFT_4337 0.69 +1.7
736 - EX28DRAFT_4337 0.69 +0.5
739 + EX28DRAFT_4337 0.69 +0.3
740 - EX28DRAFT_4337 0.70 +0.8
740 - EX28DRAFT_4337 0.70 -0.0
740 - EX28DRAFT_4337 0.70 -0.1
740 - EX28DRAFT_4337 0.70 -0.5
766 + EX28DRAFT_4337 0.75 +0.0
766 + EX28DRAFT_4337 0.75 -2.2
767 - EX28DRAFT_4337 0.75 +0.3
767 - EX28DRAFT_4337 0.75 +0.6
769 + EX28DRAFT_4337 0.75 +0.7
770 - EX28DRAFT_4337 0.76 +0.7
770 - EX28DRAFT_4337 0.76 -0.5
784 + EX28DRAFT_4337 0.78 -0.6
835 + EX28DRAFT_4337 0.88 +4.3
887 + +1.0
1,029 - EX28DRAFT_4338 0.24 +0.9
1,029 - EX28DRAFT_4338 0.24 -0.1
1,100 - EX28DRAFT_4338 0.36 -1.8
1,216 + EX28DRAFT_4338 0.56 -2.4
1,293 - EX28DRAFT_4338 0.69 -0.4
1,293 - EX28DRAFT_4338 0.69 -2.0
1,350 + EX28DRAFT_4338 0.79 +0.2
1,351 - EX28DRAFT_4338 0.79 +0.3
1,477 + +2.8
1,489 + +0.8
1,490 - +0.4
1,509 + -0.9
1,522 + -0.8
1,550 + -0.9
1,695 + EX28DRAFT_4339 0.57 -1.9
1,695 + EX28DRAFT_4339 0.57 +0.0
1,695 + EX28DRAFT_4339 0.57 +1.4
1,704 - EX28DRAFT_4339 0.60 +0.1
1,704 - EX28DRAFT_4339 0.60 +0.6
1,743 - EX28DRAFT_4339 0.74 -0.6
1,769 + EX28DRAFT_4339 0.84 +0.9
1,798 + +0.3
1,799 - +0.6
1,809 + +2.0
1,809 + +1.0
1,867 + -0.9
1,867 + +2.3

Or see this region's nucleotide sequence