Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4314

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4312 and EX28DRAFT_4313 are separated by 96 nucleotidesEX28DRAFT_4313 and EX28DRAFT_4314 are separated by 77 nucleotidesEX28DRAFT_4314 and EX28DRAFT_4315 overlap by 1 nucleotidesEX28DRAFT_4315 and EX28DRAFT_4316 overlap by 4 nucleotides EX28DRAFT_4312: EX28DRAFT_4312 - Predicted membrane protein, at 116,996 to 117,406 _4312 EX28DRAFT_4313: EX28DRAFT_4313 - Bacterial transferase hexapeptide (six repeats)/Hexapeptide repeat of succinyl-transferase, at 117,503 to 117,955 _4313 EX28DRAFT_4314: EX28DRAFT_4314 - Bacterial putative lipoprotein (DUF940), at 118,033 to 120,129 _4314 EX28DRAFT_4315: EX28DRAFT_4315 - Capsule biosynthesis GfcC, at 120,129 to 120,866 _4315 EX28DRAFT_4316: EX28DRAFT_4316 - Group 4 capsule polysaccharide formation lipoprotein gfcB, at 120,863 to 121,501 _4316 Position (kb) 118 119 120 121Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 117.066 kb on + strand, within EX28DRAFT_4312at 117.067 kb on - strand, within EX28DRAFT_4312at 117.135 kb on + strand, within EX28DRAFT_4312at 117.145 kb on - strand, within EX28DRAFT_4312at 117.145 kb on - strand, within EX28DRAFT_4312at 117.177 kb on + strand, within EX28DRAFT_4312at 117.207 kb on + strand, within EX28DRAFT_4312at 117.243 kb on + strand, within EX28DRAFT_4312at 117.243 kb on + strand, within EX28DRAFT_4312at 117.244 kb on - strand, within EX28DRAFT_4312at 117.273 kb on - strand, within EX28DRAFT_4312at 117.373 kb on + strandat 117.406 kb on + strandat 117.407 kb on - strandat 117.407 kb on - strandat 117.407 kb on - strandat 117.439 kb on + strandat 117.439 kb on + strandat 117.440 kb on - strandat 117.478 kb on + strandat 117.478 kb on + strandat 117.479 kb on - strandat 117.479 kb on - strandat 117.486 kb on - strandat 117.486 kb on - strandat 117.489 kb on + strandat 117.489 kb on + strandat 117.558 kb on + strand, within EX28DRAFT_4313at 117.558 kb on + strand, within EX28DRAFT_4313at 117.558 kb on + strand, within EX28DRAFT_4313at 117.558 kb on + strand, within EX28DRAFT_4313at 117.558 kb on + strand, within EX28DRAFT_4313at 117.559 kb on - strand, within EX28DRAFT_4313at 117.559 kb on - strand, within EX28DRAFT_4313at 117.559 kb on - strand, within EX28DRAFT_4313at 117.560 kb on + strand, within EX28DRAFT_4313at 117.560 kb on + strand, within EX28DRAFT_4313at 117.560 kb on + strand, within EX28DRAFT_4313at 117.561 kb on - strand, within EX28DRAFT_4313at 117.561 kb on - strand, within EX28DRAFT_4313at 117.579 kb on - strand, within EX28DRAFT_4313at 117.603 kb on + strand, within EX28DRAFT_4313at 117.690 kb on - strand, within EX28DRAFT_4313at 117.690 kb on - strand, within EX28DRAFT_4313at 117.697 kb on + strand, within EX28DRAFT_4313at 117.698 kb on - strand, within EX28DRAFT_4313at 117.704 kb on - strand, within EX28DRAFT_4313at 117.745 kb on + strand, within EX28DRAFT_4313at 117.745 kb on + strand, within EX28DRAFT_4313at 117.746 kb on - strand, within EX28DRAFT_4313at 117.794 kb on - strand, within EX28DRAFT_4313at 117.993 kb on + strandat 117.993 kb on + strandat 117.994 kb on - strandat 118.044 kb on + strandat 118.045 kb on - strandat 118.070 kb on + strandat 118.083 kb on + strandat 118.083 kb on + strandat 118.084 kb on - strandat 118.285 kb on - strand, within EX28DRAFT_4314at 118.291 kb on - strand, within EX28DRAFT_4314at 118.407 kb on - strand, within EX28DRAFT_4314at 118.461 kb on - strand, within EX28DRAFT_4314at 118.488 kb on + strand, within EX28DRAFT_4314at 118.505 kb on + strand, within EX28DRAFT_4314at 118.557 kb on - strand, within EX28DRAFT_4314at 118.557 kb on - strand, within EX28DRAFT_4314at 118.587 kb on - strand, within EX28DRAFT_4314at 118.595 kb on + strand, within EX28DRAFT_4314at 118.596 kb on - strand, within EX28DRAFT_4314at 118.619 kb on + strand, within EX28DRAFT_4314at 118.620 kb on - strand, within EX28DRAFT_4314at 118.620 kb on - strand, within EX28DRAFT_4314at 118.620 kb on - strand, within EX28DRAFT_4314at 118.694 kb on + strand, within EX28DRAFT_4314at 118.694 kb on + strand, within EX28DRAFT_4314at 118.695 kb on - strand, within EX28DRAFT_4314at 118.695 kb on - strand, within EX28DRAFT_4314at 118.800 kb on - strand, within EX28DRAFT_4314at 118.805 kb on + strand, within EX28DRAFT_4314at 118.805 kb on + strand, within EX28DRAFT_4314at 118.806 kb on - strand, within EX28DRAFT_4314at 118.806 kb on - strand, within EX28DRAFT_4314at 118.806 kb on - strand, within EX28DRAFT_4314at 118.806 kb on - strand, within EX28DRAFT_4314at 118.880 kb on + strand, within EX28DRAFT_4314at 118.880 kb on + strand, within EX28DRAFT_4314at 118.880 kb on + strand, within EX28DRAFT_4314at 118.881 kb on - strand, within EX28DRAFT_4314at 119.074 kb on - strand, within EX28DRAFT_4314at 119.141 kb on + strand, within EX28DRAFT_4314at 119.141 kb on + strand, within EX28DRAFT_4314at 119.141 kb on + strand, within EX28DRAFT_4314at 119.142 kb on - strand, within EX28DRAFT_4314at 119.193 kb on - strand, within EX28DRAFT_4314at 119.285 kb on + strand, within EX28DRAFT_4314at 119.286 kb on - strand, within EX28DRAFT_4314at 119.406 kb on + strand, within EX28DRAFT_4314at 119.482 kb on + strand, within EX28DRAFT_4314at 119.482 kb on + strand, within EX28DRAFT_4314at 119.505 kb on - strand, within EX28DRAFT_4314at 119.505 kb on - strand, within EX28DRAFT_4314at 119.576 kb on + strand, within EX28DRAFT_4314at 119.577 kb on - strand, within EX28DRAFT_4314at 119.597 kb on + strand, within EX28DRAFT_4314at 119.597 kb on + strand, within EX28DRAFT_4314at 119.597 kb on + strand, within EX28DRAFT_4314at 119.598 kb on - strand, within EX28DRAFT_4314at 119.598 kb on - strand, within EX28DRAFT_4314at 119.598 kb on - strand, within EX28DRAFT_4314at 119.598 kb on - strand, within EX28DRAFT_4314at 119.598 kb on - strand, within EX28DRAFT_4314at 119.711 kb on + strand, within EX28DRAFT_4314at 119.711 kb on + strand, within EX28DRAFT_4314at 119.712 kb on - strand, within EX28DRAFT_4314at 119.712 kb on - strand, within EX28DRAFT_4314at 119.712 kb on - strand, within EX28DRAFT_4314at 119.778 kb on - strand, within EX28DRAFT_4314at 119.825 kb on + strand, within EX28DRAFT_4314at 119.861 kb on + strand, within EX28DRAFT_4314at 119.862 kb on - strand, within EX28DRAFT_4314at 119.883 kb on + strand, within EX28DRAFT_4314at 119.914 kb on + strand, within EX28DRAFT_4314at 119.915 kb on - strand, within EX28DRAFT_4314at 119.915 kb on - strand, within EX28DRAFT_4314at 119.915 kb on - strand, within EX28DRAFT_4314at 119.934 kb on - strandat 119.936 kb on + strandat 119.937 kb on - strandat 119.961 kb on - strandat 119.964 kb on + strandat 119.971 kb on - strandat 120.013 kb on + strandat 120.111 kb on - strandat 120.116 kb on + strandat 120.116 kb on + strandat 120.185 kb on - strandat 120.239 kb on + strand, within EX28DRAFT_4315at 120.240 kb on - strand, within EX28DRAFT_4315at 120.258 kb on - strand, within EX28DRAFT_4315at 120.266 kb on - strand, within EX28DRAFT_4315at 120.316 kb on + strand, within EX28DRAFT_4315at 120.458 kb on + strand, within EX28DRAFT_4315at 120.458 kb on + strand, within EX28DRAFT_4315at 120.459 kb on - strand, within EX28DRAFT_4315at 120.459 kb on - strand, within EX28DRAFT_4315at 120.459 kb on - strand, within EX28DRAFT_4315at 120.460 kb on + strand, within EX28DRAFT_4315at 120.921 kb on + strandat 121.102 kb on + strand, within EX28DRAFT_4316at 121.103 kb on - strand, within EX28DRAFT_4316at 121.103 kb on - strand, within EX28DRAFT_4316

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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117,066 + EX28DRAFT_4312 0.17 +0.7
117,067 - EX28DRAFT_4312 0.17 +0.0
117,135 + EX28DRAFT_4312 0.34 +1.5
117,145 - EX28DRAFT_4312 0.36 +0.1
117,145 - EX28DRAFT_4312 0.36 +1.8
117,177 + EX28DRAFT_4312 0.44 +1.3
117,207 + EX28DRAFT_4312 0.51 +0.5
117,243 + EX28DRAFT_4312 0.60 -0.2
117,243 + EX28DRAFT_4312 0.60 -0.8
117,244 - EX28DRAFT_4312 0.60 +0.9
117,273 - EX28DRAFT_4312 0.67 +0.2
117,373 + -0.1
117,406 + -1.4
117,407 - -0.4
117,407 - -0.4
117,407 - +0.1
117,439 + -0.9
117,439 + +0.1
117,440 - +0.2
117,478 + +0.5
117,478 + +0.3
117,479 - -0.8
117,479 - -0.5
117,486 - -0.6
117,486 - +0.9
117,489 + +0.5
117,489 + +0.3
117,558 + EX28DRAFT_4313 0.12 -0.3
117,558 + EX28DRAFT_4313 0.12 -0.2
117,558 + EX28DRAFT_4313 0.12 +0.7
117,558 + EX28DRAFT_4313 0.12 -0.4
117,558 + EX28DRAFT_4313 0.12 +0.2
117,559 - EX28DRAFT_4313 0.12 -0.9
117,559 - EX28DRAFT_4313 0.12 -0.7
117,559 - EX28DRAFT_4313 0.12 -0.4
117,560 + EX28DRAFT_4313 0.13 +0.2
117,560 + EX28DRAFT_4313 0.13 +0.8
117,560 + EX28DRAFT_4313 0.13 -0.2
117,561 - EX28DRAFT_4313 0.13 +0.8
117,561 - EX28DRAFT_4313 0.13 +1.2
117,579 - EX28DRAFT_4313 0.17 -0.8
117,603 + EX28DRAFT_4313 0.22 +0.5
117,690 - EX28DRAFT_4313 0.41 +1.6
117,690 - EX28DRAFT_4313 0.41 -0.3
117,697 + EX28DRAFT_4313 0.43 -0.2
117,698 - EX28DRAFT_4313 0.43 -0.3
117,704 - EX28DRAFT_4313 0.44 +0.2
117,745 + EX28DRAFT_4313 0.53 +0.0
117,745 + EX28DRAFT_4313 0.53 -1.3
117,746 - EX28DRAFT_4313 0.54 -0.9
117,794 - EX28DRAFT_4313 0.64 -1.9
117,993 + +0.8
117,993 + +0.1
117,994 - +0.5
118,044 + +0.3
118,045 - -0.3
118,070 + -0.1
118,083 + +0.7
118,083 + +0.0
118,084 - +0.9
118,285 - EX28DRAFT_4314 0.12 -0.4
118,291 - EX28DRAFT_4314 0.12 +0.1
118,407 - EX28DRAFT_4314 0.18 +0.1
118,461 - EX28DRAFT_4314 0.20 +1.0
118,488 + EX28DRAFT_4314 0.22 -0.3
118,505 + EX28DRAFT_4314 0.23 +1.9
118,557 - EX28DRAFT_4314 0.25 -0.2
118,557 - EX28DRAFT_4314 0.25 -1.1
118,587 - EX28DRAFT_4314 0.26 +0.1
118,595 + EX28DRAFT_4314 0.27 +0.4
118,596 - EX28DRAFT_4314 0.27 +2.4
118,619 + EX28DRAFT_4314 0.28 +0.4
118,620 - EX28DRAFT_4314 0.28 +0.0
118,620 - EX28DRAFT_4314 0.28 -0.9
118,620 - EX28DRAFT_4314 0.28 -1.3
118,694 + EX28DRAFT_4314 0.32 +0.6
118,694 + EX28DRAFT_4314 0.32 +0.6
118,695 - EX28DRAFT_4314 0.32 -0.7
118,695 - EX28DRAFT_4314 0.32 +0.1
118,800 - EX28DRAFT_4314 0.37 +0.5
118,805 + EX28DRAFT_4314 0.37 -0.1
118,805 + EX28DRAFT_4314 0.37 +0.5
118,806 - EX28DRAFT_4314 0.37 +2.0
118,806 - EX28DRAFT_4314 0.37 +0.8
118,806 - EX28DRAFT_4314 0.37 +0.2
118,806 - EX28DRAFT_4314 0.37 +1.1
118,880 + EX28DRAFT_4314 0.40 -0.2
118,880 + EX28DRAFT_4314 0.40 -0.7
118,880 + EX28DRAFT_4314 0.40 +0.6
118,881 - EX28DRAFT_4314 0.40 -0.2
119,074 - EX28DRAFT_4314 0.50 +0.1
119,141 + EX28DRAFT_4314 0.53 -0.1
119,141 + EX28DRAFT_4314 0.53 +0.2
119,141 + EX28DRAFT_4314 0.53 +1.1
119,142 - EX28DRAFT_4314 0.53 -0.7
119,193 - EX28DRAFT_4314 0.55 +0.6
119,285 + EX28DRAFT_4314 0.60 +0.2
119,286 - EX28DRAFT_4314 0.60 +0.9
119,406 + EX28DRAFT_4314 0.65 +1.1
119,482 + EX28DRAFT_4314 0.69 -3.3
119,482 + EX28DRAFT_4314 0.69 -0.1
119,505 - EX28DRAFT_4314 0.70 -0.2
119,505 - EX28DRAFT_4314 0.70 -1.3
119,576 + EX28DRAFT_4314 0.74 -0.6
119,577 - EX28DRAFT_4314 0.74 -1.4
119,597 + EX28DRAFT_4314 0.75 +0.5
119,597 + EX28DRAFT_4314 0.75 +0.6
119,597 + EX28DRAFT_4314 0.75 +0.8
119,598 - EX28DRAFT_4314 0.75 +2.5
119,598 - EX28DRAFT_4314 0.75 +0.4
119,598 - EX28DRAFT_4314 0.75 +1.5
119,598 - EX28DRAFT_4314 0.75 -1.3
119,598 - EX28DRAFT_4314 0.75 +1.4
119,711 + EX28DRAFT_4314 0.80 -1.8
119,711 + EX28DRAFT_4314 0.80 -0.1
119,712 - EX28DRAFT_4314 0.80 +1.1
119,712 - EX28DRAFT_4314 0.80 -1.1
119,712 - EX28DRAFT_4314 0.80 +0.1
119,778 - EX28DRAFT_4314 0.83 +0.5
119,825 + EX28DRAFT_4314 0.85 +0.0
119,861 + EX28DRAFT_4314 0.87 +2.2
119,862 - EX28DRAFT_4314 0.87 -0.0
119,883 + EX28DRAFT_4314 0.88 +1.7
119,914 + EX28DRAFT_4314 0.90 -0.1
119,915 - EX28DRAFT_4314 0.90 -1.5
119,915 - EX28DRAFT_4314 0.90 +0.7
119,915 - EX28DRAFT_4314 0.90 +3.0
119,934 - +0.8
119,936 + +0.7
119,937 - -0.3
119,961 - -0.2
119,964 + -2.5
119,971 - -0.1
120,013 + +0.8
120,111 - -1.2
120,116 + -0.8
120,116 + -1.0
120,185 - +0.5
120,239 + EX28DRAFT_4315 0.15 +0.4
120,240 - EX28DRAFT_4315 0.15 -0.2
120,258 - EX28DRAFT_4315 0.17 -0.1
120,266 - EX28DRAFT_4315 0.19 -1.4
120,316 + EX28DRAFT_4315 0.25 -0.9
120,458 + EX28DRAFT_4315 0.45 -0.5
120,458 + EX28DRAFT_4315 0.45 -0.4
120,459 - EX28DRAFT_4315 0.45 +2.2
120,459 - EX28DRAFT_4315 0.45 +0.3
120,459 - EX28DRAFT_4315 0.45 +0.7
120,460 + EX28DRAFT_4315 0.45 +0.6
120,921 + -0.1
121,102 + EX28DRAFT_4316 0.37 +0.2
121,103 - EX28DRAFT_4316 0.38 +0.1
121,103 - EX28DRAFT_4316 0.38 -0.5

Or see this region's nucleotide sequence