Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4266 and EX28DRAFT_4267 are separated by 69 nucleotides EX28DRAFT_4267 and EX28DRAFT_4268 are separated by 117 nucleotides EX28DRAFT_4268 and EX28DRAFT_4269 are separated by 63 nucleotides EX28DRAFT_4269 and EX28DRAFT_4270 are separated by 108 nucleotides
EX28DRAFT_4266: EX28DRAFT_4266 - Fe2+/Zn2+ uptake regulation proteins, at 71,035 to 71,547
_4266
EX28DRAFT_4267: EX28DRAFT_4267 - Uncharacterized protein conserved in bacteria, at 71,617 to 71,829
_4267
EX28DRAFT_4268: EX28DRAFT_4268 - putative efflux protein, MATE family, at 71,947 to 73,284
_4268
EX28DRAFT_4269: EX28DRAFT_4269 - SOS regulatory protein LexA, at 73,348 to 73,956
_4269
EX28DRAFT_4270: EX28DRAFT_4270 - Diacylglycerol kinase, at 74,065 to 74,433
_4270
Position (kb) 71
72
73
74 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 70.953 kb on - strand at 70.953 kb on - strand at 70.995 kb on - strand at 71.015 kb on + strand at 71.015 kb on + strand at 71.040 kb on + strand at 71.389 kb on - strand, within EX28DRAFT_4266 at 71.391 kb on + strand, within EX28DRAFT_4266 at 71.392 kb on - strand, within EX28DRAFT_4266 at 71.587 kb on + strand at 71.587 kb on + strand at 71.588 kb on - strand at 71.598 kb on - strand at 71.627 kb on + strand at 71.654 kb on - strand, within EX28DRAFT_4267 at 71.742 kb on + strand, within EX28DRAFT_4267 at 71.821 kb on - strand at 72.132 kb on + strand, within EX28DRAFT_4268 at 72.183 kb on - strand, within EX28DRAFT_4268 at 72.265 kb on - strand, within EX28DRAFT_4268 at 72.265 kb on - strand, within EX28DRAFT_4268 at 72.389 kb on + strand, within EX28DRAFT_4268 at 72.412 kb on + strand, within EX28DRAFT_4268 at 72.420 kb on - strand, within EX28DRAFT_4268 at 72.675 kb on + strand, within EX28DRAFT_4268 at 72.678 kb on + strand, within EX28DRAFT_4268 at 72.679 kb on - strand, within EX28DRAFT_4268 at 72.679 kb on - strand, within EX28DRAFT_4268 at 72.679 kb on - strand, within EX28DRAFT_4268 at 72.769 kb on - strand, within EX28DRAFT_4268 at 72.816 kb on - strand, within EX28DRAFT_4268 at 72.963 kb on + strand, within EX28DRAFT_4268 at 73.055 kb on + strand, within EX28DRAFT_4268 at 73.055 kb on + strand, within EX28DRAFT_4268 at 73.055 kb on + strand, within EX28DRAFT_4268 at 73.056 kb on - strand, within EX28DRAFT_4268 at 73.155 kb on - strand at 73.511 kb on - strand, within EX28DRAFT_4269 at 74.048 kb on + strand at 74.048 kb on + strand at 74.048 kb on + strand at 74.048 kb on + strand at 74.053 kb on - strand at 74.230 kb on + strand, within EX28DRAFT_4270
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 70,953 - -0.7 70,953 - -1.5 70,995 - +1.3 71,015 + -1.0 71,015 + -0.7 71,040 + +3.4 71,389 - EX28DRAFT_4266 0.69 +3.6 71,391 + EX28DRAFT_4266 0.69 +1.0 71,392 - EX28DRAFT_4266 0.70 +2.5 71,587 + -4.1 71,587 + +0.4 71,588 - -0.5 71,598 - +0.6 71,627 + +0.4 71,654 - EX28DRAFT_4267 0.17 +0.0 71,742 + EX28DRAFT_4267 0.59 -1.6 71,821 - -0.1 72,132 + EX28DRAFT_4268 0.14 +3.2 72,183 - EX28DRAFT_4268 0.18 -2.7 72,265 - EX28DRAFT_4268 0.24 -0.4 72,265 - EX28DRAFT_4268 0.24 +0.7 72,389 + EX28DRAFT_4268 0.33 +0.0 72,412 + EX28DRAFT_4268 0.35 -2.2 72,420 - EX28DRAFT_4268 0.35 +1.2 72,675 + EX28DRAFT_4268 0.54 +0.4 72,678 + EX28DRAFT_4268 0.55 +0.8 72,679 - EX28DRAFT_4268 0.55 +1.1 72,679 - EX28DRAFT_4268 0.55 -0.0 72,679 - EX28DRAFT_4268 0.55 +1.5 72,769 - EX28DRAFT_4268 0.61 -0.7 72,816 - EX28DRAFT_4268 0.65 -0.5 72,963 + EX28DRAFT_4268 0.76 -0.1 73,055 + EX28DRAFT_4268 0.83 -1.0 73,055 + EX28DRAFT_4268 0.83 -2.0 73,055 + EX28DRAFT_4268 0.83 +0.9 73,056 - EX28DRAFT_4268 0.83 +0.6 73,155 - +0.4 73,511 - EX28DRAFT_4269 0.27 -0.3 74,048 + -0.4 74,048 + -0.5 74,048 + -2.6 74,048 + +0.5 74,053 - +0.7 74,230 + EX28DRAFT_4270 0.45 +1.2
Or see this region's nucleotide sequence