Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4241

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4240 and EX28DRAFT_4241 are separated by 293 nucleotidesEX28DRAFT_4241 and EX28DRAFT_4242 are separated by 98 nucleotidesEX28DRAFT_4242 and EX28DRAFT_4243 are separated by 6 nucleotides EX28DRAFT_4240: EX28DRAFT_4240 - Glutathione S-transferase, at 47,391 to 48,062 _4240 EX28DRAFT_4241: EX28DRAFT_4241 - redox-sensitive transcriptional activator SoxR, at 48,356 to 48,814 _4241 EX28DRAFT_4242: EX28DRAFT_4242 - AraC-type DNA-binding domain-containing proteins, at 48,913 to 49,239 _4242 EX28DRAFT_4243: EX28DRAFT_4243 - Predicted signal transduction protein containing sensor and EAL domains, at 49,246 to 50,811 _4243 Position (kb) 48 49Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 47.408 kb on + strandat 47.409 kb on - strandat 47.409 kb on - strandat 47.409 kb on - strandat 47.582 kb on + strand, within EX28DRAFT_4240at 47.582 kb on + strand, within EX28DRAFT_4240at 47.606 kb on + strand, within EX28DRAFT_4240at 47.607 kb on - strand, within EX28DRAFT_4240at 47.688 kb on - strand, within EX28DRAFT_4240at 47.768 kb on - strand, within EX28DRAFT_4240at 47.768 kb on - strand, within EX28DRAFT_4240at 47.796 kb on - strand, within EX28DRAFT_4240at 47.836 kb on + strand, within EX28DRAFT_4240at 47.837 kb on - strand, within EX28DRAFT_4240at 47.837 kb on - strand, within EX28DRAFT_4240at 47.847 kb on + strand, within EX28DRAFT_4240at 47.848 kb on - strand, within EX28DRAFT_4240at 47.851 kb on + strand, within EX28DRAFT_4240at 47.852 kb on - strand, within EX28DRAFT_4240at 47.972 kb on - strand, within EX28DRAFT_4240at 48.076 kb on + strandat 48.082 kb on + strandat 48.089 kb on + strandat 48.178 kb on + strandat 48.178 kb on + strandat 48.179 kb on - strandat 48.179 kb on - strandat 48.268 kb on + strandat 48.269 kb on - strandat 48.308 kb on + strandat 48.320 kb on + strandat 48.321 kb on - strandat 48.321 kb on - strandat 48.321 kb on - strandat 48.328 kb on + strandat 48.328 kb on + strandat 48.328 kb on + strandat 48.329 kb on - strandat 48.331 kb on - strandat 48.331 kb on - strandat 48.457 kb on + strand, within EX28DRAFT_4241at 48.458 kb on - strand, within EX28DRAFT_4241at 48.493 kb on + strand, within EX28DRAFT_4241at 48.494 kb on - strand, within EX28DRAFT_4241at 48.499 kb on + strand, within EX28DRAFT_4241at 48.703 kb on + strand, within EX28DRAFT_4241at 48.703 kb on + strand, within EX28DRAFT_4241at 48.704 kb on - strand, within EX28DRAFT_4241at 48.724 kb on - strand, within EX28DRAFT_4241at 48.790 kb on + strandat 48.836 kb on - strandat 48.878 kb on - strandat 48.886 kb on + strandat 48.887 kb on - strandat 48.892 kb on + strandat 48.892 kb on + strandat 48.897 kb on - strandat 48.912 kb on + strandat 48.912 kb on + strandat 48.912 kb on + strandat 48.913 kb on - strandat 48.930 kb on + strandat 48.943 kb on - strandat 48.964 kb on - strand, within EX28DRAFT_4242at 48.964 kb on - strand, within EX28DRAFT_4242at 48.996 kb on + strand, within EX28DRAFT_4242at 49.022 kb on - strand, within EX28DRAFT_4242at 49.022 kb on - strand, within EX28DRAFT_4242at 49.022 kb on - strand, within EX28DRAFT_4242at 49.022 kb on - strand, within EX28DRAFT_4242at 49.157 kb on - strand, within EX28DRAFT_4242at 49.369 kb on + strandat 49.419 kb on + strand, within EX28DRAFT_4243at 49.419 kb on + strand, within EX28DRAFT_4243at 49.636 kb on + strand, within EX28DRAFT_4243at 49.637 kb on - strand, within EX28DRAFT_4243at 49.637 kb on - strand, within EX28DRAFT_4243at 49.741 kb on - strand, within EX28DRAFT_4243at 49.741 kb on - strand, within EX28DRAFT_4243at 49.742 kb on + strand, within EX28DRAFT_4243at 49.742 kb on + strand, within EX28DRAFT_4243at 49.743 kb on - strand, within EX28DRAFT_4243at 49.802 kb on + strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243at 49.803 kb on - strand, within EX28DRAFT_4243

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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47,408 + -0.3
47,409 - +0.3
47,409 - -0.3
47,409 - -1.9
47,582 + EX28DRAFT_4240 0.28 +1.0
47,582 + EX28DRAFT_4240 0.28 -0.0
47,606 + EX28DRAFT_4240 0.32 +0.3
47,607 - EX28DRAFT_4240 0.32 -2.2
47,688 - EX28DRAFT_4240 0.44 -2.2
47,768 - EX28DRAFT_4240 0.56 +0.2
47,768 - EX28DRAFT_4240 0.56 -3.4
47,796 - EX28DRAFT_4240 0.60 -0.6
47,836 + EX28DRAFT_4240 0.66 -0.9
47,837 - EX28DRAFT_4240 0.66 -0.3
47,837 - EX28DRAFT_4240 0.66 -0.7
47,847 + EX28DRAFT_4240 0.68 +1.4
47,848 - EX28DRAFT_4240 0.68 +0.3
47,851 + EX28DRAFT_4240 0.68 +0.8
47,852 - EX28DRAFT_4240 0.69 +1.1
47,972 - EX28DRAFT_4240 0.86 -0.9
48,076 + +0.6
48,082 + -2.3
48,089 + -0.3
48,178 + +3.2
48,178 + -4.5
48,179 - -0.9
48,179 - -0.5
48,268 + -0.5
48,269 - +0.5
48,308 + +0.0
48,320 + +0.3
48,321 - +0.7
48,321 - +0.3
48,321 - +0.7
48,328 + +0.4
48,328 + -0.1
48,328 + +0.7
48,329 - -1.1
48,331 - -0.5
48,331 - +0.5
48,457 + EX28DRAFT_4241 0.22 +0.9
48,458 - EX28DRAFT_4241 0.22 -0.3
48,493 + EX28DRAFT_4241 0.30 +0.1
48,494 - EX28DRAFT_4241 0.30 +0.6
48,499 + EX28DRAFT_4241 0.31 +0.7
48,703 + EX28DRAFT_4241 0.76 +0.7
48,703 + EX28DRAFT_4241 0.76 -0.6
48,704 - EX28DRAFT_4241 0.76 +0.3
48,724 - EX28DRAFT_4241 0.80 +0.1
48,790 + -0.5
48,836 - +0.8
48,878 - +0.9
48,886 + +1.5
48,887 - +0.2
48,892 + -0.3
48,892 + -1.3
48,897 - +0.9
48,912 + -0.1
48,912 + +0.3
48,912 + -0.6
48,913 - -1.4
48,930 + -0.7
48,943 - -1.7
48,964 - EX28DRAFT_4242 0.16 -2.0
48,964 - EX28DRAFT_4242 0.16 +1.6
48,996 + EX28DRAFT_4242 0.25 -2.0
49,022 - EX28DRAFT_4242 0.33 -0.5
49,022 - EX28DRAFT_4242 0.33 +1.0
49,022 - EX28DRAFT_4242 0.33 -1.9
49,022 - EX28DRAFT_4242 0.33 +0.1
49,157 - EX28DRAFT_4242 0.75 -0.1
49,369 + -1.7
49,419 + EX28DRAFT_4243 0.11 -0.3
49,419 + EX28DRAFT_4243 0.11 +1.5
49,636 + EX28DRAFT_4243 0.25 +0.7
49,637 - EX28DRAFT_4243 0.25 -0.1
49,637 - EX28DRAFT_4243 0.25 +0.8
49,741 - EX28DRAFT_4243 0.32 +0.2
49,741 - EX28DRAFT_4243 0.32 +0.8
49,742 + EX28DRAFT_4243 0.32 -1.6
49,742 + EX28DRAFT_4243 0.32 -0.7
49,743 - EX28DRAFT_4243 0.32 +0.2
49,802 + EX28DRAFT_4243 0.36 -0.2
49,803 - EX28DRAFT_4243 0.36 -0.4
49,803 - EX28DRAFT_4243 0.36 +0.6
49,803 - EX28DRAFT_4243 0.36 +0.5
49,803 - EX28DRAFT_4243 0.36 -3.1
49,803 - EX28DRAFT_4243 0.36 -0.6
49,803 - EX28DRAFT_4243 0.36 -3.3
49,803 - EX28DRAFT_4243 0.36 -0.0

Or see this region's nucleotide sequence