Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4238 and EX28DRAFT_4239 are separated by 150 nucleotides EX28DRAFT_4239 and EX28DRAFT_4240 are separated by 294 nucleotides
EX28DRAFT_4238: EX28DRAFT_4238 - Na+/H+ antiporter, bacterial form, at 43,950 to 45,596
_4238
EX28DRAFT_4239: EX28DRAFT_4239 - Permeases, at 45,747 to 47,096
_4239
EX28DRAFT_4240: EX28DRAFT_4240 - Glutathione S-transferase, at 47,391 to 48,062
_4240
Position (kb) 45
46
47
48 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 44.899 kb on + strand, within EX28DRAFT_4238 at 44.899 kb on + strand, within EX28DRAFT_4238 at 44.929 kb on - strand, within EX28DRAFT_4238 at 44.929 kb on - strand, within EX28DRAFT_4238 at 45.284 kb on - strand, within EX28DRAFT_4238 at 45.528 kb on + strand at 45.576 kb on + strand at 45.621 kb on + strand at 45.621 kb on + strand at 45.622 kb on - strand at 45.622 kb on - strand at 45.622 kb on - strand at 45.622 kb on - strand at 45.626 kb on - strand at 45.626 kb on - strand at 45.649 kb on + strand at 45.649 kb on + strand at 45.649 kb on + strand at 45.654 kb on + strand at 45.654 kb on + strand at 45.655 kb on - strand at 45.655 kb on - strand at 45.748 kb on + strand at 45.749 kb on - strand at 45.749 kb on - strand at 45.749 kb on - strand at 45.749 kb on - strand at 45.749 kb on - strand at 45.749 kb on - strand at 45.819 kb on - strand at 45.819 kb on - strand at 45.819 kb on - strand at 45.872 kb on + strand at 45.994 kb on + strand, within EX28DRAFT_4239 at 45.995 kb on - strand, within EX28DRAFT_4239 at 45.995 kb on - strand, within EX28DRAFT_4239 at 46.034 kb on - strand, within EX28DRAFT_4239 at 46.138 kb on + strand, within EX28DRAFT_4239 at 46.275 kb on - strand, within EX28DRAFT_4239 at 46.275 kb on - strand, within EX28DRAFT_4239 at 46.275 kb on - strand, within EX28DRAFT_4239 at 46.542 kb on - strand, within EX28DRAFT_4239 at 46.542 kb on - strand, within EX28DRAFT_4239 at 46.975 kb on + strand at 47.076 kb on - strand at 47.096 kb on + strand at 47.097 kb on - strand at 47.097 kb on - strand at 47.097 kb on - strand at 47.270 kb on - strand at 47.275 kb on - strand at 47.325 kb on + strand at 47.325 kb on + strand at 47.326 kb on - strand at 47.408 kb on + strand at 47.409 kb on - strand at 47.409 kb on - strand at 47.409 kb on - strand at 47.582 kb on + strand, within EX28DRAFT_4240 at 47.582 kb on + strand, within EX28DRAFT_4240 at 47.606 kb on + strand, within EX28DRAFT_4240 at 47.607 kb on - strand, within EX28DRAFT_4240 at 47.688 kb on - strand, within EX28DRAFT_4240 at 47.768 kb on - strand, within EX28DRAFT_4240 at 47.768 kb on - strand, within EX28DRAFT_4240 at 47.796 kb on - strand, within EX28DRAFT_4240 at 47.836 kb on + strand, within EX28DRAFT_4240 at 47.837 kb on - strand, within EX28DRAFT_4240 at 47.837 kb on - strand, within EX28DRAFT_4240 at 47.847 kb on + strand, within EX28DRAFT_4240 at 47.848 kb on - strand, within EX28DRAFT_4240 at 47.851 kb on + strand, within EX28DRAFT_4240 at 47.852 kb on - strand, within EX28DRAFT_4240 at 47.972 kb on - strand, within EX28DRAFT_4240 at 48.076 kb on + strand at 48.082 kb on + strand at 48.089 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 44,899 + EX28DRAFT_4238 0.58 -1.5 44,899 + EX28DRAFT_4238 0.58 -0.1 44,929 - EX28DRAFT_4238 0.59 -1.0 44,929 - EX28DRAFT_4238 0.59 -0.3 45,284 - EX28DRAFT_4238 0.81 -1.7 45,528 + -1.7 45,576 + +0.4 45,621 + -0.4 45,621 + -0.9 45,622 - -0.4 45,622 - -4.3 45,622 - +0.4 45,622 - -0.3 45,626 - -0.2 45,626 - -2.5 45,649 + +0.7 45,649 + -0.9 45,649 + +0.2 45,654 + +0.6 45,654 + -2.4 45,655 - -0.6 45,655 - -1.9 45,748 + -2.5 45,749 - +0.5 45,749 - -2.8 45,749 - +0.0 45,749 - +0.8 45,749 - +1.3 45,749 - +0.3 45,819 - +1.1 45,819 - +0.5 45,819 - -0.6 45,872 + +0.6 45,994 + EX28DRAFT_4239 0.18 -3.1 45,995 - EX28DRAFT_4239 0.18 +1.5 45,995 - EX28DRAFT_4239 0.18 -0.8 46,034 - EX28DRAFT_4239 0.21 -1.2 46,138 + EX28DRAFT_4239 0.29 -0.0 46,275 - EX28DRAFT_4239 0.39 +0.3 46,275 - EX28DRAFT_4239 0.39 -0.4 46,275 - EX28DRAFT_4239 0.39 +0.8 46,542 - EX28DRAFT_4239 0.59 -2.2 46,542 - EX28DRAFT_4239 0.59 -0.8 46,975 + -1.2 47,076 - +0.3 47,096 + -0.3 47,097 - +0.7 47,097 - +0.4 47,097 - -2.3 47,270 - +0.5 47,275 - -0.4 47,325 + -0.8 47,325 + -0.9 47,326 - +0.0 47,408 + -0.3 47,409 - +0.3 47,409 - -0.3 47,409 - -1.9 47,582 + EX28DRAFT_4240 0.28 +1.0 47,582 + EX28DRAFT_4240 0.28 -0.0 47,606 + EX28DRAFT_4240 0.32 +0.3 47,607 - EX28DRAFT_4240 0.32 -2.2 47,688 - EX28DRAFT_4240 0.44 -2.2 47,768 - EX28DRAFT_4240 0.56 +0.2 47,768 - EX28DRAFT_4240 0.56 -3.4 47,796 - EX28DRAFT_4240 0.60 -0.6 47,836 + EX28DRAFT_4240 0.66 -0.9 47,837 - EX28DRAFT_4240 0.66 -0.3 47,837 - EX28DRAFT_4240 0.66 -0.7 47,847 + EX28DRAFT_4240 0.68 +1.4 47,848 - EX28DRAFT_4240 0.68 +0.3 47,851 + EX28DRAFT_4240 0.68 +0.8 47,852 - EX28DRAFT_4240 0.69 +1.1 47,972 - EX28DRAFT_4240 0.86 -0.9 48,076 + +0.6 48,082 + -2.3 48,089 + -0.3
Or see this region's nucleotide sequence