Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4201

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4199 and EX28DRAFT_4200 are separated by 136 nucleotidesEX28DRAFT_4200 and EX28DRAFT_4201 are separated by 24 nucleotidesEX28DRAFT_4201 and EX28DRAFT_4202 are separated by 50 nucleotidesEX28DRAFT_4202 and EX28DRAFT_4203 are separated by 20 nucleotides EX28DRAFT_4199: EX28DRAFT_4199 - Uncharacterized protein conserved in bacteria, at 8,643 to 9,080 _4199 EX28DRAFT_4200: EX28DRAFT_4200 - phosphonate ABC transporter, ATP-binding protein, at 9,217 to 10,005 _4200 EX28DRAFT_4201: EX28DRAFT_4201 - phosphonate ABC transporter, periplasmic phosphonate binding protein, at 10,030 to 11,046 _4201 EX28DRAFT_4202: EX28DRAFT_4202 - phosphonate ABC transporter, permease protein PhnE, at 11,097 to 11,876 _4202 EX28DRAFT_4203: EX28DRAFT_4203 - phosphonates metabolism transcriptional regulator PhnF, at 11,897 to 12,622 _4203 Position (kb) 10 11 12Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 9.032 kb on + strand, within EX28DRAFT_4199at 9.036 kb on + strand, within EX28DRAFT_4199at 9.036 kb on + strand, within EX28DRAFT_4199at 9.037 kb on - strandat 9.057 kb on - strandat 9.199 kb on + strandat 9.200 kb on - strandat 9.268 kb on - strandat 9.365 kb on + strand, within EX28DRAFT_4200at 9.365 kb on + strand, within EX28DRAFT_4200at 9.365 kb on + strand, within EX28DRAFT_4200at 9.376 kb on - strand, within EX28DRAFT_4200at 9.484 kb on + strand, within EX28DRAFT_4200at 9.618 kb on - strand, within EX28DRAFT_4200at 9.860 kb on - strand, within EX28DRAFT_4200at 9.962 kb on - strandat 10.003 kb on + strandat 10.003 kb on + strandat 10.004 kb on - strandat 10.004 kb on - strandat 10.027 kb on + strandat 10.027 kb on + strandat 10.028 kb on - strandat 10.036 kb on + strandat 10.036 kb on + strandat 10.063 kb on - strandat 10.102 kb on + strandat 10.275 kb on + strand, within EX28DRAFT_4201at 10.278 kb on + strand, within EX28DRAFT_4201at 10.278 kb on + strand, within EX28DRAFT_4201at 10.498 kb on + strand, within EX28DRAFT_4201at 10.516 kb on + strand, within EX28DRAFT_4201at 10.516 kb on + strand, within EX28DRAFT_4201at 10.516 kb on + strand, within EX28DRAFT_4201at 10.516 kb on + strand, within EX28DRAFT_4201at 10.782 kb on + strand, within EX28DRAFT_4201at 10.790 kb on - strand, within EX28DRAFT_4201at 11.032 kb on - strandat 11.044 kb on + strandat 11.044 kb on + strandat 11.085 kb on + strandat 11.146 kb on + strandat 11.147 kb on - strandat 11.178 kb on - strand, within EX28DRAFT_4202at 11.178 kb on - strand, within EX28DRAFT_4202at 11.290 kb on - strand, within EX28DRAFT_4202at 11.405 kb on - strand, within EX28DRAFT_4202at 11.406 kb on + strand, within EX28DRAFT_4202at 11.623 kb on + strand, within EX28DRAFT_4202at 11.623 kb on + strand, within EX28DRAFT_4202at 11.624 kb on - strand, within EX28DRAFT_4202at 11.658 kb on - strand, within EX28DRAFT_4202

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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9,032 + EX28DRAFT_4199 0.89 -2.0
9,036 + EX28DRAFT_4199 0.90 +0.2
9,036 + EX28DRAFT_4199 0.90 +0.7
9,037 - -0.6
9,057 - +1.3
9,199 + -0.8
9,200 - -0.1
9,268 - +0.2
9,365 + EX28DRAFT_4200 0.19 +0.2
9,365 + EX28DRAFT_4200 0.19 +1.2
9,365 + EX28DRAFT_4200 0.19 -0.4
9,376 - EX28DRAFT_4200 0.20 +0.1
9,484 + EX28DRAFT_4200 0.34 +0.5
9,618 - EX28DRAFT_4200 0.51 +0.7
9,860 - EX28DRAFT_4200 0.81 -0.6
9,962 - +1.1
10,003 + +0.7
10,003 + +1.0
10,004 - +0.2
10,004 - -0.1
10,027 + +0.5
10,027 + +0.4
10,028 - +0.1
10,036 + -0.0
10,036 + +0.8
10,063 - -0.1
10,102 + +0.2
10,275 + EX28DRAFT_4201 0.24 -3.7
10,278 + EX28DRAFT_4201 0.24 -0.6
10,278 + EX28DRAFT_4201 0.24 -0.8
10,498 + EX28DRAFT_4201 0.46 -0.8
10,516 + EX28DRAFT_4201 0.48 +2.2
10,516 + EX28DRAFT_4201 0.48 +0.8
10,516 + EX28DRAFT_4201 0.48 -0.4
10,516 + EX28DRAFT_4201 0.48 -1.1
10,782 + EX28DRAFT_4201 0.74 -0.5
10,790 - EX28DRAFT_4201 0.75 +1.9
11,032 - +0.7
11,044 + -2.9
11,044 + -0.5
11,085 + -1.1
11,146 + +0.3
11,147 - +0.6
11,178 - EX28DRAFT_4202 0.10 +0.6
11,178 - EX28DRAFT_4202 0.10 +0.1
11,290 - EX28DRAFT_4202 0.25 +1.5
11,405 - EX28DRAFT_4202 0.39 -0.6
11,406 + EX28DRAFT_4202 0.40 +0.1
11,623 + EX28DRAFT_4202 0.67 -0.6
11,623 + EX28DRAFT_4202 0.67 -1.1
11,624 - EX28DRAFT_4202 0.68 +1.1
11,658 - EX28DRAFT_4202 0.72 -0.8

Or see this region's nucleotide sequence