Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4179 and EX28DRAFT_4180 are separated by 13 nucleotides EX28DRAFT_4180 and EX28DRAFT_4181 are separated by 94 nucleotides EX28DRAFT_4181 and EX28DRAFT_4182 are separated by 51 nucleotides
EX28DRAFT_4179: EX28DRAFT_4179 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 162,553 to 164,358
_4179
EX28DRAFT_4180: EX28DRAFT_4180 - conserved hypothetical metal-binding protein, at 164,372 to 164,572
_4180
EX28DRAFT_4181: EX28DRAFT_4181 - FKBP-type peptidyl-prolyl cis-trans isomerases 2, at 164,667 to 165,257
_4181
EX28DRAFT_4182: EX28DRAFT_4182 - Uncharacterized protein conserved in bacteria, at 165,309 to 165,527
_4182
Position (kb) 164
165 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 163.377 kb on + strand, within EX28DRAFT_4179 at 163.414 kb on + strand, within EX28DRAFT_4179 at 163.415 kb on - strand, within EX28DRAFT_4179 at 163.480 kb on + strand, within EX28DRAFT_4179 at 163.480 kb on + strand, within EX28DRAFT_4179 at 163.481 kb on - strand, within EX28DRAFT_4179 at 163.494 kb on + strand, within EX28DRAFT_4179 at 163.494 kb on + strand, within EX28DRAFT_4179 at 163.495 kb on - strand, within EX28DRAFT_4179 at 163.495 kb on - strand, within EX28DRAFT_4179 at 163.498 kb on + strand, within EX28DRAFT_4179 at 163.542 kb on - strand, within EX28DRAFT_4179 at 163.647 kb on + strand, within EX28DRAFT_4179 at 163.647 kb on + strand, within EX28DRAFT_4179 at 163.647 kb on + strand, within EX28DRAFT_4179 at 163.647 kb on + strand, within EX28DRAFT_4179 at 163.648 kb on - strand, within EX28DRAFT_4179 at 163.648 kb on - strand, within EX28DRAFT_4179 at 163.648 kb on - strand, within EX28DRAFT_4179 at 163.648 kb on - strand, within EX28DRAFT_4179 at 163.648 kb on - strand, within EX28DRAFT_4179 at 163.648 kb on - strand, within EX28DRAFT_4179 at 163.648 kb on - strand, within EX28DRAFT_4179 at 163.648 kb on - strand, within EX28DRAFT_4179 at 163.648 kb on - strand, within EX28DRAFT_4179 at 163.830 kb on + strand, within EX28DRAFT_4179 at 163.872 kb on + strand, within EX28DRAFT_4179 at 163.873 kb on - strand, within EX28DRAFT_4179 at 163.873 kb on - strand, within EX28DRAFT_4179 at 163.876 kb on + strand, within EX28DRAFT_4179 at 163.877 kb on - strand, within EX28DRAFT_4179 at 163.882 kb on + strand, within EX28DRAFT_4179 at 163.884 kb on + strand, within EX28DRAFT_4179 at 163.885 kb on - strand, within EX28DRAFT_4179 at 163.962 kb on + strand, within EX28DRAFT_4179 at 163.963 kb on - strand, within EX28DRAFT_4179 at 164.031 kb on + strand, within EX28DRAFT_4179 at 164.379 kb on + strand at 164.383 kb on + strand at 164.384 kb on - strand at 164.432 kb on - strand, within EX28DRAFT_4180 at 164.458 kb on + strand, within EX28DRAFT_4180 at 164.458 kb on + strand, within EX28DRAFT_4180 at 164.459 kb on - strand, within EX28DRAFT_4180 at 164.479 kb on + strand, within EX28DRAFT_4180 at 164.594 kb on - strand at 164.598 kb on + strand at 164.605 kb on + strand at 164.704 kb on - strand at 164.714 kb on + strand at 164.714 kb on + strand at 164.766 kb on + strand, within EX28DRAFT_4181 at 165.256 kb on - strand at 165.448 kb on - strand, within EX28DRAFT_4182 at 165.510 kb on + strand at 165.510 kb on + strand at 165.510 kb on + strand at 165.511 kb on - strand at 165.511 kb on - strand at 165.518 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 163,377 + EX28DRAFT_4179 0.46 -1.3 163,414 + EX28DRAFT_4179 0.48 -0.8 163,415 - EX28DRAFT_4179 0.48 -0.4 163,480 + EX28DRAFT_4179 0.51 -0.2 163,480 + EX28DRAFT_4179 0.51 -0.0 163,481 - EX28DRAFT_4179 0.51 +0.6 163,494 + EX28DRAFT_4179 0.52 +0.8 163,494 + EX28DRAFT_4179 0.52 +0.9 163,495 - EX28DRAFT_4179 0.52 -0.0 163,495 - EX28DRAFT_4179 0.52 +0.5 163,498 + EX28DRAFT_4179 0.52 -0.5 163,542 - EX28DRAFT_4179 0.55 +0.4 163,647 + EX28DRAFT_4179 0.61 -0.1 163,647 + EX28DRAFT_4179 0.61 +0.0 163,647 + EX28DRAFT_4179 0.61 +2.1 163,647 + EX28DRAFT_4179 0.61 +0.3 163,648 - EX28DRAFT_4179 0.61 -3.3 163,648 - EX28DRAFT_4179 0.61 -3.3 163,648 - EX28DRAFT_4179 0.61 +2.5 163,648 - EX28DRAFT_4179 0.61 -0.0 163,648 - EX28DRAFT_4179 0.61 -0.7 163,648 - EX28DRAFT_4179 0.61 +0.4 163,648 - EX28DRAFT_4179 0.61 +0.3 163,648 - EX28DRAFT_4179 0.61 +1.4 163,648 - EX28DRAFT_4179 0.61 +0.9 163,830 + EX28DRAFT_4179 0.71 +3.8 163,872 + EX28DRAFT_4179 0.73 -0.3 163,873 - EX28DRAFT_4179 0.73 -2.5 163,873 - EX28DRAFT_4179 0.73 -1.5 163,876 + EX28DRAFT_4179 0.73 +0.4 163,877 - EX28DRAFT_4179 0.73 +0.3 163,882 + EX28DRAFT_4179 0.74 -3.3 163,884 + EX28DRAFT_4179 0.74 +1.0 163,885 - EX28DRAFT_4179 0.74 -1.1 163,962 + EX28DRAFT_4179 0.78 +1.2 163,963 - EX28DRAFT_4179 0.78 +0.6 164,031 + EX28DRAFT_4179 0.82 +2.2 164,379 + -0.1 164,383 + +3.3 164,384 - +0.5 164,432 - EX28DRAFT_4180 0.30 -2.2 164,458 + EX28DRAFT_4180 0.43 -2.5 164,458 + EX28DRAFT_4180 0.43 -0.6 164,459 - EX28DRAFT_4180 0.43 -0.9 164,479 + EX28DRAFT_4180 0.53 -3.0 164,594 - -0.1 164,598 + +0.7 164,605 + -3.0 164,704 - +0.7 164,714 + -0.3 164,714 + +0.1 164,766 + EX28DRAFT_4181 0.17 -0.3 165,256 - +0.7 165,448 - EX28DRAFT_4182 0.63 +1.0 165,510 + -0.4 165,510 + -3.0 165,510 + +0.4 165,511 - +0.3 165,511 - +0.1 165,518 + -0.1
Or see this region's nucleotide sequence