Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4148 and EX28DRAFT_4149 are separated by 3 nucleotides EX28DRAFT_4149 and EX28DRAFT_4150 overlap by 11 nucleotides EX28DRAFT_4150 and EX28DRAFT_4151 overlap by 11 nucleotides EX28DRAFT_4151 and EX28DRAFT_4152 are separated by 286 nucleotides EX28DRAFT_4152 and EX28DRAFT_4153 are separated by 57 nucleotides
EX28DRAFT_4148: EX28DRAFT_4148 - Tfp pilus assembly protein PilN, at 130,547 to 131,041
_4148
EX28DRAFT_4149: EX28DRAFT_4149 - hypothetical protein, at 131,045 to 131,500
_4149
EX28DRAFT_4150: EX28DRAFT_4150 - Protein of unknown function (DUF2531), at 131,490 to 131,894
_4150
EX28DRAFT_4151: EX28DRAFT_4151 - type IV pilus secretin (or competence protein) PilQ, at 131,884 to 133,044
_4151
EX28DRAFT_4152: EX28DRAFT_4152 - shikimate kinase (EC 2.7.1.71), at 133,331 to 133,852
_4152
EX28DRAFT_4153: EX28DRAFT_4153 - 3-dehydroquinate synthase (EC 4.2.3.4), at 133,910 to 134,998
_4153
Position (kb) 131
132
133
134 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 131.027 kb on - strand at 131.059 kb on - strand at 131.459 kb on - strand at 131.533 kb on + strand, within EX28DRAFT_4150 at 131.533 kb on + strand, within EX28DRAFT_4150 at 131.647 kb on + strand, within EX28DRAFT_4150 at 131.801 kb on + strand, within EX28DRAFT_4150 at 131.904 kb on - strand at 132.182 kb on - strand, within EX28DRAFT_4151 at 132.364 kb on - strand, within EX28DRAFT_4151 at 132.364 kb on - strand, within EX28DRAFT_4151 at 132.364 kb on - strand, within EX28DRAFT_4151 at 132.780 kb on + strand, within EX28DRAFT_4151 at 132.842 kb on + strand, within EX28DRAFT_4151 at 132.842 kb on + strand, within EX28DRAFT_4151 at 133.005 kb on - strand at 133.015 kb on - strand at 133.015 kb on - strand at 133.018 kb on - strand at 133.111 kb on + strand at 133.112 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.117 kb on - strand at 133.145 kb on - strand at 133.151 kb on + strand at 133.151 kb on + strand at 133.152 kb on - strand at 133.152 kb on - strand at 133.152 kb on - strand at 133.159 kb on + strand at 133.181 kb on - strand at 133.237 kb on + strand at 133.238 kb on - strand at 133.244 kb on + strand at 133.244 kb on + strand at 133.315 kb on + strand at 133.318 kb on + strand at 133.349 kb on - strand at 133.488 kb on + strand, within EX28DRAFT_4152 at 133.634 kb on + strand, within EX28DRAFT_4152 at 133.828 kb on + strand at 133.862 kb on + strand at 133.864 kb on + strand at 133.864 kb on + strand at 133.865 kb on - strand at 133.865 kb on - strand at 133.866 kb on + strand at 133.866 kb on + strand at 133.866 kb on + strand at 133.867 kb on - strand at 133.891 kb on + strand at 133.927 kb on + strand at 133.943 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 131,027 - -0.1 131,059 - +1.0 131,459 - -0.7 131,533 + EX28DRAFT_4150 0.11 +1.4 131,533 + EX28DRAFT_4150 0.11 +0.4 131,647 + EX28DRAFT_4150 0.39 +0.2 131,801 + EX28DRAFT_4150 0.77 -0.7 131,904 - -0.5 132,182 - EX28DRAFT_4151 0.26 +0.6 132,364 - EX28DRAFT_4151 0.41 -0.1 132,364 - EX28DRAFT_4151 0.41 -1.0 132,364 - EX28DRAFT_4151 0.41 +0.8 132,780 + EX28DRAFT_4151 0.77 +0.9 132,842 + EX28DRAFT_4151 0.83 +0.5 132,842 + EX28DRAFT_4151 0.83 +0.1 133,005 - +0.4 133,015 - +0.1 133,015 - -2.6 133,018 - +0.5 133,111 + +0.2 133,112 - -0.2 133,117 - +0.4 133,117 - +0.3 133,117 - +1.2 133,117 - -0.6 133,117 - -0.2 133,117 - -3.5 133,145 - -2.6 133,151 + -1.8 133,151 + -0.9 133,152 - -0.5 133,152 - +1.1 133,152 - -0.5 133,159 + +0.1 133,181 - -0.4 133,237 + -0.7 133,238 - -1.7 133,244 + -0.8 133,244 + -1.1 133,315 + +0.1 133,318 + -2.0 133,349 - +0.2 133,488 + EX28DRAFT_4152 0.30 -2.3 133,634 + EX28DRAFT_4152 0.58 -1.0 133,828 + -0.6 133,862 + -1.3 133,864 + +0.9 133,864 + +0.3 133,865 - -3.3 133,865 - -0.9 133,866 + -0.3 133,866 + -0.2 133,866 + -0.6 133,867 - -0.8 133,891 + +1.2 133,927 + +0.2 133,943 - -1.2
Or see this region's nucleotide sequence