Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4120

Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_4119 and EX28DRAFT_4120 are separated by 95 nucleotidesEX28DRAFT_4120 and EX28DRAFT_4121 are separated by 188 nucleotidesEX28DRAFT_4121 and EX28DRAFT_4122 are separated by 47 nucleotides EX28DRAFT_4119: EX28DRAFT_4119 - glycogen/starch/alpha-glucan phosphorylases, at 93,081 to 95,528 _4119 EX28DRAFT_4120: EX28DRAFT_4120 - Glycerol-3-phosphate dehydrogenase, at 95,624 to 97,132 _4120 EX28DRAFT_4121: EX28DRAFT_4121 - Rhodanese-related sulfurtransferase, at 97,321 to 97,653 _4121 EX28DRAFT_4122: EX28DRAFT_4122 - rhomboid family protease GlpG, at 97,701 to 98,531 _4122 Position (kb) 95 96 97 98Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 94.743 kb on + strand, within EX28DRAFT_4119at 94.743 kb on + strand, within EX28DRAFT_4119at 94.744 kb on - strand, within EX28DRAFT_4119at 94.774 kb on + strand, within EX28DRAFT_4119at 94.774 kb on + strand, within EX28DRAFT_4119at 94.774 kb on + strand, within EX28DRAFT_4119at 94.774 kb on + strand, within EX28DRAFT_4119at 94.775 kb on - strand, within EX28DRAFT_4119at 94.785 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.866 kb on + strand, within EX28DRAFT_4119at 94.867 kb on - strand, within EX28DRAFT_4119at 94.903 kb on + strand, within EX28DRAFT_4119at 94.904 kb on - strand, within EX28DRAFT_4119at 94.904 kb on - strand, within EX28DRAFT_4119at 94.968 kb on + strand, within EX28DRAFT_4119at 94.968 kb on + strand, within EX28DRAFT_4119at 95.058 kb on - strand, within EX28DRAFT_4119at 95.058 kb on - strand, within EX28DRAFT_4119at 95.148 kb on - strand, within EX28DRAFT_4119at 95.166 kb on - strand, within EX28DRAFT_4119at 95.217 kb on + strand, within EX28DRAFT_4119at 95.240 kb on - strand, within EX28DRAFT_4119at 95.277 kb on - strand, within EX28DRAFT_4119at 95.325 kb on - strandat 95.340 kb on + strandat 95.436 kb on + strandat 95.436 kb on + strandat 95.437 kb on - strandat 95.437 kb on - strandat 95.438 kb on + strandat 95.439 kb on - strandat 95.439 kb on - strandat 95.450 kb on + strandat 95.457 kb on + strandat 95.457 kb on + strandat 95.458 kb on - strandat 95.507 kb on + strandat 95.507 kb on + strandat 95.507 kb on + strandat 95.526 kb on + strandat 95.527 kb on - strandat 95.734 kb on + strandat 96.016 kb on - strand, within EX28DRAFT_4120at 96.131 kb on - strand, within EX28DRAFT_4120at 96.131 kb on - strand, within EX28DRAFT_4120at 96.247 kb on - strand, within EX28DRAFT_4120at 96.261 kb on + strand, within EX28DRAFT_4120at 96.310 kb on - strand, within EX28DRAFT_4120at 96.814 kb on + strand, within EX28DRAFT_4120at 96.815 kb on - strand, within EX28DRAFT_4120at 96.815 kb on - strand, within EX28DRAFT_4120at 96.957 kb on + strand, within EX28DRAFT_4120at 97.227 kb on + strandat 97.246 kb on + strandat 97.247 kb on - strandat 97.247 kb on - strandat 97.273 kb on + strandat 97.273 kb on + strandat 97.309 kb on - strandat 97.339 kb on - strandat 97.341 kb on + strandat 97.346 kb on + strandat 97.346 kb on + strandat 97.347 kb on - strandat 97.347 kb on - strandat 97.549 kb on + strand, within EX28DRAFT_4121at 97.580 kb on - strand, within EX28DRAFT_4121at 97.580 kb on - strand, within EX28DRAFT_4121at 97.580 kb on - strand, within EX28DRAFT_4121at 97.636 kb on + strandat 97.662 kb on + strandat 97.662 kb on + strandat 97.662 kb on + strandat 97.662 kb on + strandat 97.662 kb on + strandat 97.663 kb on - strandat 97.663 kb on - strandat 97.721 kb on + strandat 97.721 kb on + strandat 97.722 kb on - strandat 97.757 kb on + strandat 97.796 kb on + strand, within EX28DRAFT_4122at 97.796 kb on + strand, within EX28DRAFT_4122at 98.027 kb on + strand, within EX28DRAFT_4122at 98.030 kb on + strand, within EX28DRAFT_4122

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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94,743 + EX28DRAFT_4119 0.68 +0.2
94,743 + EX28DRAFT_4119 0.68 +1.3
94,744 - EX28DRAFT_4119 0.68 -0.2
94,774 + EX28DRAFT_4119 0.69 -0.9
94,774 + EX28DRAFT_4119 0.69 -0.4
94,774 + EX28DRAFT_4119 0.69 +0.9
94,774 + EX28DRAFT_4119 0.69 -0.1
94,775 - EX28DRAFT_4119 0.69 +0.9
94,785 + EX28DRAFT_4119 0.70 -0.6
94,866 + EX28DRAFT_4119 0.73 +0.7
94,866 + EX28DRAFT_4119 0.73 +0.2
94,866 + EX28DRAFT_4119 0.73 -1.1
94,866 + EX28DRAFT_4119 0.73 +0.4
94,866 + EX28DRAFT_4119 0.73 +0.8
94,866 + EX28DRAFT_4119 0.73 +0.7
94,866 + EX28DRAFT_4119 0.73 -0.6
94,867 - EX28DRAFT_4119 0.73 -0.3
94,903 + EX28DRAFT_4119 0.74 -1.3
94,904 - EX28DRAFT_4119 0.74 -0.5
94,904 - EX28DRAFT_4119 0.74 -1.1
94,968 + EX28DRAFT_4119 0.77 +0.5
94,968 + EX28DRAFT_4119 0.77 -1.3
95,058 - EX28DRAFT_4119 0.81 -1.2
95,058 - EX28DRAFT_4119 0.81 +0.2
95,148 - EX28DRAFT_4119 0.84 -2.6
95,166 - EX28DRAFT_4119 0.85 -1.2
95,217 + EX28DRAFT_4119 0.87 -0.5
95,240 - EX28DRAFT_4119 0.88 -0.2
95,277 - EX28DRAFT_4119 0.90 +0.0
95,325 - -0.9
95,340 + -0.2
95,436 + +0.6
95,436 + +1.2
95,437 - +1.3
95,437 - +0.4
95,438 + +1.1
95,439 - -2.5
95,439 - -3.1
95,450 + -0.5
95,457 + -0.3
95,457 + -0.8
95,458 - -1.4
95,507 + -2.5
95,507 + -1.0
95,507 + +0.2
95,526 + +1.0
95,527 - +0.3
95,734 + -2.0
96,016 - EX28DRAFT_4120 0.26 -0.5
96,131 - EX28DRAFT_4120 0.34 -4.1
96,131 - EX28DRAFT_4120 0.34 -1.6
96,247 - EX28DRAFT_4120 0.41 -1.2
96,261 + EX28DRAFT_4120 0.42 -1.0
96,310 - EX28DRAFT_4120 0.45 -2.6
96,814 + EX28DRAFT_4120 0.79 -2.1
96,815 - EX28DRAFT_4120 0.79 -0.3
96,815 - EX28DRAFT_4120 0.79 -1.1
96,957 + EX28DRAFT_4120 0.88 -1.3
97,227 + +2.2
97,246 + +0.1
97,247 - -1.9
97,247 - +0.4
97,273 + -2.3
97,273 + -1.2
97,309 - -0.1
97,339 - -3.0
97,341 + +4.8
97,346 + -1.2
97,346 + -0.5
97,347 - -0.9
97,347 - +0.0
97,549 + EX28DRAFT_4121 0.68 +0.2
97,580 - EX28DRAFT_4121 0.78 -1.1
97,580 - EX28DRAFT_4121 0.78 -0.1
97,580 - EX28DRAFT_4121 0.78 +1.4
97,636 + +0.1
97,662 + -0.6
97,662 + -0.0
97,662 + +0.9
97,662 + -1.2
97,662 + -0.7
97,663 - +1.0
97,663 - -2.9
97,721 + -0.7
97,721 + -1.1
97,722 - -0.3
97,757 + +0.7
97,796 + EX28DRAFT_4122 0.11 +0.3
97,796 + EX28DRAFT_4122 0.11 -1.1
98,027 + EX28DRAFT_4122 0.39 -0.1
98,030 + EX28DRAFT_4122 0.40 -0.5

Or see this region's nucleotide sequence