Experiment: Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4106 and EX28DRAFT_4107 are separated by 69 nucleotides EX28DRAFT_4107 and EX28DRAFT_4108 are separated by 337 nucleotides EX28DRAFT_4108 and EX28DRAFT_4109 are separated by 145 nucleotides
EX28DRAFT_4106: EX28DRAFT_4106 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 77,939 to 79,003
_4106
EX28DRAFT_4107: EX28DRAFT_4107 - hypothetical protein, at 79,073 to 79,462
_4107
EX28DRAFT_4108: EX28DRAFT_4108 - Predicted permease, at 79,800 to 80,849
_4108
EX28DRAFT_4109: EX28DRAFT_4109 - Arabinose efflux permease, at 80,995 to 82,212
_4109
Position (kb) 79
80
81 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 78.804 kb on - strand, within EX28DRAFT_4106 at 79.012 kb on - strand at 79.071 kb on + strand at 79.072 kb on - strand at 79.191 kb on + strand, within EX28DRAFT_4107 at 79.191 kb on + strand, within EX28DRAFT_4107 at 79.268 kb on - strand, within EX28DRAFT_4107 at 79.364 kb on + strand, within EX28DRAFT_4107 at 79.369 kb on + strand, within EX28DRAFT_4107 at 79.718 kb on + strand at 79.761 kb on - strand at 79.787 kb on - strand at 79.787 kb on - strand at 79.886 kb on + strand at 79.891 kb on - strand at 79.891 kb on - strand at 79.953 kb on + strand, within EX28DRAFT_4108 at 79.954 kb on - strand, within EX28DRAFT_4108 at 79.959 kb on + strand, within EX28DRAFT_4108 at 79.960 kb on - strand, within EX28DRAFT_4108 at 79.965 kb on + strand, within EX28DRAFT_4108 at 79.965 kb on + strand, within EX28DRAFT_4108 at 79.965 kb on + strand, within EX28DRAFT_4108 at 80.033 kb on + strand, within EX28DRAFT_4108 at 80.034 kb on - strand, within EX28DRAFT_4108 at 80.034 kb on - strand, within EX28DRAFT_4108 at 80.034 kb on - strand, within EX28DRAFT_4108 at 80.074 kb on + strand, within EX28DRAFT_4108 at 80.075 kb on - strand, within EX28DRAFT_4108 at 80.084 kb on + strand, within EX28DRAFT_4108 at 80.146 kb on + strand, within EX28DRAFT_4108 at 80.147 kb on - strand, within EX28DRAFT_4108 at 80.200 kb on - strand, within EX28DRAFT_4108 at 80.200 kb on - strand, within EX28DRAFT_4108 at 80.263 kb on + strand, within EX28DRAFT_4108 at 80.264 kb on - strand, within EX28DRAFT_4108 at 80.264 kb on - strand, within EX28DRAFT_4108 at 80.341 kb on + strand, within EX28DRAFT_4108 at 80.341 kb on + strand, within EX28DRAFT_4108 at 80.342 kb on - strand, within EX28DRAFT_4108 at 80.370 kb on - strand, within EX28DRAFT_4108 at 80.370 kb on - strand, within EX28DRAFT_4108 at 80.370 kb on - strand, within EX28DRAFT_4108 at 80.443 kb on + strand, within EX28DRAFT_4108 at 80.496 kb on - strand, within EX28DRAFT_4108 at 80.496 kb on - strand, within EX28DRAFT_4108 at 80.504 kb on + strand, within EX28DRAFT_4108 at 80.560 kb on + strand, within EX28DRAFT_4108 at 80.560 kb on + strand, within EX28DRAFT_4108 at 80.708 kb on + strand, within EX28DRAFT_4108 at 80.708 kb on + strand, within EX28DRAFT_4108 at 80.750 kb on + strand at 80.750 kb on + strand at 80.750 kb on + strand at 80.860 kb on + strand at 80.863 kb on + strand at 80.864 kb on - strand at 80.864 kb on - strand at 80.877 kb on - strand at 80.882 kb on + strand at 80.883 kb on - strand at 80.883 kb on - strand at 80.883 kb on - strand at 80.941 kb on + strand at 80.957 kb on + strand at 81.082 kb on + strand at 81.083 kb on - strand at 81.083 kb on - strand at 81.121 kb on + strand, within EX28DRAFT_4109 at 81.121 kb on + strand, within EX28DRAFT_4109 at 81.170 kb on + strand, within EX28DRAFT_4109 at 81.182 kb on - strand, within EX28DRAFT_4109 at 81.293 kb on - strand, within EX28DRAFT_4109 at 81.293 kb on - strand, within EX28DRAFT_4109 at 81.473 kb on - strand, within EX28DRAFT_4109 at 81.727 kb on + strand, within EX28DRAFT_4109 at 81.774 kb on + strand, within EX28DRAFT_4109
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 78,804 - EX28DRAFT_4106 0.81 +1.0 79,012 - -0.9 79,071 + -0.5 79,072 - +0.2 79,191 + EX28DRAFT_4107 0.30 -0.7 79,191 + EX28DRAFT_4107 0.30 +0.3 79,268 - EX28DRAFT_4107 0.50 +0.9 79,364 + EX28DRAFT_4107 0.75 +0.8 79,369 + EX28DRAFT_4107 0.76 +0.1 79,718 + +0.3 79,761 - -0.8 79,787 - -1.1 79,787 - +0.1 79,886 + -0.5 79,891 - -0.3 79,891 - -0.2 79,953 + EX28DRAFT_4108 0.15 -0.7 79,954 - EX28DRAFT_4108 0.15 +1.7 79,959 + EX28DRAFT_4108 0.15 -0.0 79,960 - EX28DRAFT_4108 0.15 +0.3 79,965 + EX28DRAFT_4108 0.16 -1.8 79,965 + EX28DRAFT_4108 0.16 +0.4 79,965 + EX28DRAFT_4108 0.16 +1.2 80,033 + EX28DRAFT_4108 0.22 -0.8 80,034 - EX28DRAFT_4108 0.22 +3.5 80,034 - EX28DRAFT_4108 0.22 +0.2 80,034 - EX28DRAFT_4108 0.22 +1.4 80,074 + EX28DRAFT_4108 0.26 +0.9 80,075 - EX28DRAFT_4108 0.26 -0.1 80,084 + EX28DRAFT_4108 0.27 -0.6 80,146 + EX28DRAFT_4108 0.33 -0.2 80,147 - EX28DRAFT_4108 0.33 -0.3 80,200 - EX28DRAFT_4108 0.38 -0.4 80,200 - EX28DRAFT_4108 0.38 +0.3 80,263 + EX28DRAFT_4108 0.44 +1.0 80,264 - EX28DRAFT_4108 0.44 +0.8 80,264 - EX28DRAFT_4108 0.44 -0.2 80,341 + EX28DRAFT_4108 0.52 -2.1 80,341 + EX28DRAFT_4108 0.52 +0.6 80,342 - EX28DRAFT_4108 0.52 -0.1 80,370 - EX28DRAFT_4108 0.54 +2.1 80,370 - EX28DRAFT_4108 0.54 +0.2 80,370 - EX28DRAFT_4108 0.54 +1.5 80,443 + EX28DRAFT_4108 0.61 -2.6 80,496 - EX28DRAFT_4108 0.66 +0.3 80,496 - EX28DRAFT_4108 0.66 +1.1 80,504 + EX28DRAFT_4108 0.67 +0.9 80,560 + EX28DRAFT_4108 0.72 +0.0 80,560 + EX28DRAFT_4108 0.72 +0.6 80,708 + EX28DRAFT_4108 0.86 -2.5 80,708 + EX28DRAFT_4108 0.86 -0.3 80,750 + -2.0 80,750 + -0.9 80,750 + +2.2 80,860 + -0.3 80,863 + +0.9 80,864 - -0.2 80,864 - -0.8 80,877 - -1.0 80,882 + -2.2 80,883 - -1.7 80,883 - -1.4 80,883 - +1.7 80,941 + -2.2 80,957 + +0.3 81,082 + +0.5 81,083 - -1.6 81,083 - +1.2 81,121 + EX28DRAFT_4109 0.10 -0.7 81,121 + EX28DRAFT_4109 0.10 -0.3 81,170 + EX28DRAFT_4109 0.14 -1.6 81,182 - EX28DRAFT_4109 0.15 -0.2 81,293 - EX28DRAFT_4109 0.24 +0.8 81,293 - EX28DRAFT_4109 0.24 +0.4 81,473 - EX28DRAFT_4109 0.39 +0.4 81,727 + EX28DRAFT_4109 0.60 +0.4 81,774 + EX28DRAFT_4109 0.64 -1.0
Or see this region's nucleotide sequence